Stderr output

<core_client_version>7.18.1</core_client_version>
<![CDATA[
<stderr_txt>
00:44:50 (83178): wrapper (7.7.26015): starting
00:44:50 (83178): wrapper: running run_atlas (--nthreads 6)
[2025-12-03 00:44:50] Arguments: --nthreads 6
[2025-12-03 00:44:50] Threads: 6
[2025-12-03 00:44:50] Checking for CVMFS
[2025-12-03 00:44:51] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-03 00:44:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-03 00:44:52] Running cvmfs_config stat atlas.cern.ch
[2025-12-03 00:44:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-03 00:44:53] 2.11.5.0 39069 26 43184 153574 1 76 3761539 4194304 1523 130560 0 127959 99.986 2823 302 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.3.250:3128 1
[2025-12-03 00:44:53] CVMFS is ok
[2025-12-03 00:44:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-03 00:44:53] Checking for apptainer binary...
[2025-12-03 00:44:53] apptainer is not installed, using version from CVMFS
[2025-12-03 00:44:53] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-03 00:44:56] boinc-b450f
[2025-12-03 00:44:56] apptainer works
[2025-12-03 00:44:56] Set ATHENA_PROC_NUMBER=6
[2025-12-03 00:44:56] Set ATHENA_CORE_NUMBER=6
[2025-12-03 00:44:56] Starting ATLAS job with PandaID=6905456809
[2025-12-03 00:44:56] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-03 08:14:16]  *** The last 200 lines of the pilot log: ***
[2025-12-03 08:14:16] 2025-12-03 07:13:41,380 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-03 08:14:16] 2025-12-03 07:13:41,382 | INFO     | found 12 cores (12 cores per socket, 1 socket) HT, CPU MHz: 3873.132208333334
[2025-12-03 08:14:16] 2025-12-03 07:13:41,383 | INFO     | using path: /var/lib/boinc-client/slots/0/PanDA_Pilot-6905456809/memory_monitor_summary.json (trf name=prmon)
[2025-12-03 08:14:16] 2025-12-03 07:13:41,384 | INFO     | extracted standard info from prmon json
[2025-12-03 08:14:16] 2025-12-03 07:13:41,384 | INFO     | extracted standard memory fields from prmon json
[2025-12-03 08:14:16] 2025-12-03 07:13:41,384 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-03 08:14:16] 2025-12-03 07:13:41,387 | INFO     | fitting pss+swap vs Time
[2025-12-03 08:14:16] 2025-12-03 07:13:41,388 | INFO     | sum of square deviations: 26414002230.0
[2025-12-03 08:14:16] 2025-12-03 07:13:41,389 | INFO     | sum of deviations: 300364919117.50006
[2025-12-03 08:14:16] 2025-12-03 07:13:41,390 | INFO     | mean x: 1764732578.5
[2025-12-03 08:14:16] 2025-12-03 07:13:41,390 | INFO     | mean y: 3038906.3840909093
[2025-12-03 08:14:16] 2025-12-03 07:13:41,390 | INFO     | intersect: -20064490186.31599
[2025-12-03 08:14:16] 2025-12-03 07:13:41,390 | INFO     | chi2: 3.7836056055990004
[2025-12-03 08:14:16] 2025-12-03 07:13:41,390 | INFO     | sum of square deviations: 25523715770.0
[2025-12-03 08:14:16] 2025-12-03 07:13:41,392 | INFO     | sum of deviations: 379467681138.00006
[2025-12-03 08:14:16] 2025-12-03 07:13:41,392 | INFO     | mean x: 1764732426.0
[2025-12-03 08:14:16] 2025-12-03 07:13:41,392 | INFO     | mean y: 3052389.7218390806
[2025-12-03 08:14:16] 2025-12-03 07:13:41,392 | INFO     | intersect: -26233680833.51673
[2025-12-03 08:14:16] 2025-12-03 07:13:41,393 | INFO     | chi2: 2.4460998678078054
[2025-12-03 08:14:16] 2025-12-03 07:13:41,393 | INFO     | current chi2=2.4460998678078054 (change=35.35003055846906 %)
[2025-12-03 08:14:16] 2025-12-03 07:13:41,393 | INFO     | sum of square deviations: 24653662247.5
[2025-12-03 08:14:16] 2025-12-03 07:13:41,395 | INFO     | sum of deviations: 371522887479.00006
[2025-12-03 08:14:16] 2025-12-03 07:13:41,395 | INFO     | mean x: 1764732273.5
[2025-12-03 08:14:16] 2025-12-03 07:13:41,395 | INFO     | mean y: 3050996.9348837207
[2025-12-03 08:14:16] 2025-12-03 07:13:41,395 | INFO     | intersect: -26590905847.938553
[2025-12-03 08:14:16] 2025-12-03 07:13:41,395 | INFO     | chi2: 2.445391146826099
[2025-12-03 08:14:16] 2025-12-03 07:13:41,395 | INFO     | current chi2=2.445391146826099 (change=0.028973509668737425 %)
[2025-12-03 08:14:16] 2025-12-03 07:13:41,395 | INFO     | right removable region: 429
[2025-12-03 08:14:16] 2025-12-03 07:13:41,395 | INFO     | sum of square deviations: 25523715770.0
[2025-12-03 08:14:16] 2025-12-03 07:13:41,397 | INFO     | sum of deviations: 171793795224.9999
[2025-12-03 08:14:16] 2025-12-03 07:13:41,397 | INFO     | mean x: 1764732731.0
[2025-12-03 08:14:16] 2025-12-03 07:13:41,397 | INFO     | mean y: 3060866.2183908047
[2025-12-03 08:14:16] 2025-12-03 07:13:41,397 | INFO     | intersect: -11874917095.462572
[2025-12-03 08:14:16] 2025-12-03 07:13:41,398 | INFO     | chi2: 1.4119506441655332
[2025-12-03 08:14:16] 2025-12-03 07:13:41,398 | INFO     | current chi2=1.4119506441655332 (change=62.682404263379865 %)
[2025-12-03 08:14:16] 2025-12-03 07:13:41,398 | INFO     | sum of square deviations: 24653662247.5
[2025-12-03 08:14:16] 2025-12-03 07:13:41,400 | INFO     | sum of deviations: 151913264454.5
[2025-12-03 08:14:16] 2025-12-03 07:13:41,400 | INFO     | mean x: 1764732883.5
[2025-12-03 08:14:16] 2025-12-03 07:13:41,400 | INFO     | mean y: 3064346.9418604653
[2025-12-03 08:14:16] 2025-12-03 07:13:41,400 | INFO     | intersect: -10871033405.000576
[2025-12-03 08:14:16] 2025-12-03 07:13:41,400 | INFO     | chi2: 1.3884518867996989
[2025-12-03 08:14:16] 2025-12-03 07:13:41,400 | INFO     | current chi2=1.3884518867996989 (change=1.6642761177903722 %)
[2025-12-03 08:14:16] 2025-12-03 07:13:41,400 | INFO     | left removable region: 20
[2025-12-03 08:14:16] 2025-12-03 07:13:41,401 | INFO     | sum of square deviations: 21215132660.0
[2025-12-03 08:14:16] 2025-12-03 07:13:41,402 | INFO     | sum of deviations: 197532290287.0
[2025-12-03 08:14:16] 2025-12-03 07:13:41,402 | INFO     | mean x: 1764732853.0
[2025-12-03 08:14:16] 2025-12-03 07:13:41,402 | INFO     | mean y: 3082084.1711491444
[2025-12-03 08:14:16] 2025-12-03 07:13:41,402 | INFO     | intersect: -16428194956.81822
[2025-12-03 08:14:16] 2025-12-03 07:13:41,403 | INFO     | chi2: 0.024070212821725286
[2025-12-03 08:14:16] 2025-12-03 07:13:41,403 | INFO     | current memory leak: 9.31 B/s (using 409 data points, chi2=0.02)
[2025-12-03 08:14:16] 2025-12-03 07:13:41,403 | INFO     | could have reported an average CPU frequency of 3864 MHz (18 samples)
[2025-12-03 08:14:16] 2025-12-03 07:13:41,403 | INFO     | ..............................
[2025-12-03 08:14:16] 2025-12-03 07:13:41,403 | INFO     | . Timing measurements:
[2025-12-03 08:14:16] 2025-12-03 07:13:41,403 | INFO     | . get job = 0 s
[2025-12-03 08:14:16] 2025-12-03 07:13:41,403 | INFO     | . initial setup = 3 s
[2025-12-03 08:14:16] 2025-12-03 07:13:41,403 | INFO     | . payload setup = 19 s
[2025-12-03 08:14:16] 2025-12-03 07:13:41,403 | INFO     | . stage-in = 0 s
[2025-12-03 08:14:16] 2025-12-03 07:13:41,403 | INFO     | . payload execution = 26832 s
[2025-12-03 08:14:16] 2025-12-03 07:13:41,403 | INFO     | . stage-out = 3 s
[2025-12-03 08:14:16] 2025-12-03 07:13:41,403 | INFO     | . log creation = 0 s
[2025-12-03 08:14:16] 2025-12-03 07:13:41,403 | INFO     | ..............................
[2025-12-03 08:14:16] 2025-12-03 07:13:41,804 | INFO     | 
[2025-12-03 08:14:16] 2025-12-03 07:13:41,804 | INFO     | job summary report
[2025-12-03 08:14:16] 2025-12-03 07:13:41,804 | INFO     | --------------------------------------------------
[2025-12-03 08:14:16] 2025-12-03 07:13:41,804 | INFO     | PanDA job id: 6905456809
[2025-12-03 08:14:16] 2025-12-03 07:13:41,804 | INFO     | task id: 47530725
[2025-12-03 08:14:16] 2025-12-03 07:13:41,804 | INFO     | errors: (none)
[2025-12-03 08:14:16] 2025-12-03 07:13:41,805 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-03 08:14:16] 2025-12-03 07:13:41,805 | INFO     | pilot state: finished 
[2025-12-03 08:14:16] 2025-12-03 07:13:41,805 | INFO     | transexitcode: 0
[2025-12-03 08:14:16] 2025-12-03 07:13:41,805 | INFO     | exeerrorcode: 0
[2025-12-03 08:14:16] 2025-12-03 07:13:41,805 | INFO     | exeerrordiag: 
[2025-12-03 08:14:16] 2025-12-03 07:13:41,805 | INFO     | exitcode: 0
[2025-12-03 08:14:16] 2025-12-03 07:13:41,805 | INFO     | exitmsg: OK
[2025-12-03 08:14:16] 2025-12-03 07:13:41,805 | INFO     | cpuconsumptiontime: 139698 s
[2025-12-03 08:14:16] 2025-12-03 07:13:41,805 | INFO     | nevents: 1000
[2025-12-03 08:14:16] 2025-12-03 07:13:41,805 | INFO     | neventsw: 0
[2025-12-03 08:14:16] 2025-12-03 07:13:41,805 | INFO     | pid: 95841
[2025-12-03 08:14:16] 2025-12-03 07:13:41,805 | INFO     | pgrp: 95841
[2025-12-03 08:14:16] 2025-12-03 07:13:41,805 | INFO     | corecount: 6
[2025-12-03 08:14:16] 2025-12-03 07:13:41,805 | INFO     | event service: False
[2025-12-03 08:14:16] 2025-12-03 07:13:41,806 | INFO     | sizes: {0: 2284289, 11: 2284403, 12: 2284693, 21: 2284721, 26856: 2342122, 26859: 2351130, 26861: 2351314, 26864: 2351560}
[2025-12-03 08:14:16] 2025-12-03 07:13:41,806 | INFO     | --------------------------------------------------
[2025-12-03 08:14:16] 2025-12-03 07:13:41,806 | INFO     | 
[2025-12-03 08:14:16] 2025-12-03 07:13:41,806 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/0
[2025-12-03 08:14:16] 2025-12-03 07:13:41,815 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-03 08:14:16] 2025-12-03 07:13:41,815 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-03 08:14:16] 2025-12-03 07:13:41,815 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-03 08:14:16] 2025-12-03 07:13:41,815 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-03 08:14:16] 2025-12-03 07:13:41,816 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-03 08:14:16] 2025-12-03 07:13:41,816 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-03 08:14:16] 2025-12-03 07:13:41,816 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-03 08:14:16] 2025-12-03 07:13:41,816 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-03 08:14:16] 2025-12-03 07:13:41,816 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-03 08:14:16] 2025-12-03 07:13:41,816 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-03 08:14:16] 2025-12-03 07:13:41,816 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-03 08:14:16] 2025-12-03 07:13:41,816 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-03 08:14:16] 2025-12-03 07:13:41,816 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-03 08:14:16] 2025-12-03 07:13:41,816 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-03 08:14:16] 2025-12-03 07:13:41,816 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-03 08:14:16] 2025-12-03 07:13:41,816 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-03 08:14:16] 2025-12-03 07:13:41,816 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-03 08:14:16] 2025-12-03 07:13:41,816 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-03 08:14:16] 2025-12-03 07:13:41,816 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-03 08:14:16] 2025-12-03 07:13:41,816 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-03 08:14:16] 2025-12-03 07:13:41,817 | INFO     | job 6905456809 has completed (purged errors)
[2025-12-03 08:14:16] 2025-12-03 07:13:41,817 | INFO     | overall cleanup function is called
[2025-12-03 08:14:16] 2025-12-03 07:13:42,826 | INFO     | --- collectZombieJob: --- 10, [95841]
[2025-12-03 08:14:16] 2025-12-03 07:13:42,826 | INFO     | zombie collector waiting for pid 95841
[2025-12-03 08:14:16] 2025-12-03 07:13:42,826 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-03 08:14:16] 2025-12-03 07:13:42,826 | INFO     | collected zombie processes
[2025-12-03 08:14:16] 2025-12-03 07:13:42,826 | INFO     | will attempt to kill all subprocesses of pid=95841
[2025-12-03 08:14:16] 2025-12-03 07:13:42,916 | INFO     | process IDs to be killed: [95841] (in reverse order)
[2025-12-03 08:14:16] 2025-12-03 07:13:42,942 | WARNING  | found no corresponding commands to process id(s)
[2025-12-03 08:14:16] 2025-12-03 07:13:42,942 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-03 08:14:16] 2025-12-03 07:13:42,944 | INFO     | did not find any defunct processes belonging to 95841
[2025-12-03 08:14:16] 2025-12-03 07:13:42,946 | INFO     | did not find any defunct processes belonging to 95841
[2025-12-03 08:14:16] 2025-12-03 07:13:42,947 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-03 08:14:16] 2025-12-03 07:13:42,947 | INFO     | ready for new job
[2025-12-03 08:14:16] 2025-12-03 07:13:42,947 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-03 08:14:16] 2025-12-03 07:13:42,948 | INFO     | ***************************************
[2025-12-03 08:14:16] 2025-12-03 07:13:42,948 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-03 08:14:16] 2025-12-03 07:13:42,948 | INFO     | ***************************************
[2025-12-03 08:14:16] 2025-12-03 07:13:42,948 | INFO     | 
[2025-12-03 08:14:16] 2025-12-03 07:13:42,949 | INFO     | architecture information:
[2025-12-03 08:14:16] 2025-12-03 07:13:42,949 | INFO     | executing command: cat /etc/os-release
[2025-12-03 08:14:16] 2025-12-03 07:13:42,955 | INFO     | cat /etc/os-release:
[2025-12-03 08:14:16] NAME="CentOS Linux"
[2025-12-03 08:14:16] VERSION="7 (Core)"
[2025-12-03 08:14:16] ID="centos"
[2025-12-03 08:14:16] ID_LIKE="rhel fedora"
[2025-12-03 08:14:16] VERSION_ID="7"
[2025-12-03 08:14:16] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-03 08:14:16] ANSI_COLOR="0;31"
[2025-12-03 08:14:16] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-03 08:14:16] HOME_URL="https://www.centos.org/"
[2025-12-03 08:14:16] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-03 08:14:16] 
[2025-12-03 08:14:16] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-03 08:14:16] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-03 08:14:16] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-03 08:14:16] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-03 08:14:16] 
[2025-12-03 08:14:16] 2025-12-03 07:13:42,955 | INFO     | ***************************************
[2025-12-03 08:14:16] 2025-12-03 07:13:43,458 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/0
[2025-12-03 08:14:16] 2025-12-03 07:13:43,466 | INFO     | sufficient remaining disk space (17132683264 B)
[2025-12-03 08:14:16] 2025-12-03 07:13:43,466 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-03 08:14:16] 2025-12-03 07:13:43,466 | INFO     | current server update state: UPDATING_FINAL
[2025-12-03 08:14:16] 2025-12-03 07:13:43,466 | INFO     | update_server=False
[2025-12-03 08:14:16] 2025-12-03 07:13:43,466 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-03 08:14:16] 2025-12-03 07:13:43,499 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-12-03 08:14:16] 2025-12-03 07:13:43,499 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-12-03 08:14:16] 2025-12-03 07:13:43,499 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-03 08:14:16] 2025-12-03 07:13:43,499 | INFO     | will abort loop
[2025-12-03 08:14:16] 2025-12-03 07:13:43,515 | INFO     | all job control threads have been joined
[2025-12-03 08:14:16] 2025-12-03 07:13:44,322 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-03 08:14:16] 2025-12-03 07:13:44,325 | INFO     | all data control threads have been joined
[2025-12-03 08:14:16] 2025-12-03 07:13:44,391 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-03 08:14:16] 2025-12-03 07:13:44,471 | INFO     | [job] retrieve thread has finished
[2025-12-03 08:14:16] 2025-12-03 07:13:44,504 | INFO     | [job] job monitor thread has finished
[2025-12-03 08:14:16] 2025-12-03 07:13:44,519 | INFO     | [job] control thread has finished
[2025-12-03 08:14:16] 2025-12-03 07:13:44,548 | INFO     | [payload] failed_post thread has finished
[2025-12-03 08:14:16] 2025-12-03 07:13:44,609 | INFO     | [payload] execute_payloads thread has finished
[2025-12-03 08:14:16] 2025-12-03 07:13:44,629 | INFO     | all payload control threads have been joined
[2025-12-03 08:14:16] 2025-12-03 07:13:44,899 | INFO     | [job] validate thread has finished
[2025-12-03 08:14:16] 2025-12-03 07:13:45,329 | INFO     | [data] control thread has finished
[2025-12-03 08:14:16] 2025-12-03 07:13:45,379 | INFO     | [payload] validate_post thread has finished
[2025-12-03 08:14:16] 2025-12-03 07:13:45,634 | INFO     | [payload] control thread has finished
[2025-12-03 08:14:16] 2025-12-03 07:13:45,854 | INFO     | [payload] validate_pre thread has finished
[2025-12-03 08:14:16] 2025-12-03 07:13:45,905 | INFO     | [data] copytool_in thread has finished
[2025-12-03 08:14:16] 2025-12-03 07:13:45,912 | INFO     | [job] create_data_payload thread has finished
[2025-12-03 08:14:16] 2025-12-03 07:13:46,399 | INFO     | [data] copytool_out thread has finished
[2025-12-03 08:14:16] 2025-12-03 07:13:46,464 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-03 08:14:16] 2025-12-03 07:13:47,469 | INFO     | [job] queue monitor thread has finished
[2025-12-03 08:14:16] 2025-12-03 07:13:48,327 | INFO     | [data] queue_monitor thread has finished
[2025-12-03 08:14:16] 2025-12-03 07:13:54,049 | INFO     | job.realtimelogging is not enabled
[2025-12-03 08:14:16] 2025-12-03 07:13:55,054 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-03 08:14:16] 2025-12-03 07:14:10,759 | INFO     | [monitor] cgroup control has ended
[2025-12-03 08:14:16] 2025-12-03 07:14:11,494 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140040783963968)>', '<ExcThread(monitor, started 140040395011840)>']
[2025-12-03 08:14:16] 2025-12-03 07:14:14,301 | INFO     | PID=87938 has CPU usage=4.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-03 08:14:16] 2025-12-03 07:14:14,301 | INFO     | .. there are 3 such processes running
[2025-12-03 08:14:16] 2025-12-03 07:14:14,302 | INFO     | found 0 job(s) in 20 queues
[2025-12-03 08:14:16] 2025-12-03 07:14:14,302 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-03 08:14:16] 2025-12-03 07:14:14,302 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-03 08:14:16] 2025-12-03 07:14:14,302 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-03 08:14:16] 2025-12-03 07:14:14,302 | INFO     | [monitor] control thread has ended
[2025-12-03 08:14:16] 2025-12-03 07:14:16,519 | INFO     | all workflow threads have been joined
[2025-12-03 08:14:16] 2025-12-03 07:14:16,519 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-03 08:14:16] 2025-12-03 07:14:16,520 | INFO     | traces error code: 0
[2025-12-03 08:14:16] 2025-12-03 07:14:16,520 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-03 08:14:16] 2025-12-03 07:14:16,583 [wrapper] ==== pilot stdout END ====
[2025-12-03 08:14:16] 2025-12-03 07:14:16,584 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-03 08:14:16] 2025-12-03 07:14:16,585 [wrapper] pilotpid: 87938
[2025-12-03 08:14:16] 2025-12-03 07:14:16,586 [wrapper] Pilot exit status: 0
[2025-12-03 08:14:16] 2025-12-03 07:14:16,591 [wrapper] pandaids: 6905456809
[2025-12-03 08:14:16] 2025-12-03 07:14:16,607 [wrapper] cleanup supervisor_pilot  301022 87939
[2025-12-03 08:14:16] 2025-12-03 07:14:16,608 [wrapper] Test setup, not cleaning
[2025-12-03 08:14:16] 2025-12-03 07:14:16,609 [wrapper] apfmon messages muted
[2025-12-03 08:14:16] 2025-12-03 07:14:16,610 [wrapper] ==== wrapper stdout END ====
[2025-12-03 08:14:16] 2025-12-03 07:14:16,611 [wrapper] ==== wrapper stderr END ====
[2025-12-03 08:14:16]  *** Error codes and diagnostics ***
[2025-12-03 08:14:16]     "exeErrorCode": 0,
[2025-12-03 08:14:16]     "exeErrorDiag": "",
[2025-12-03 08:14:16]     "pilotErrorCode": 0,
[2025-12-03 08:14:16]     "pilotErrorDiag": "",
[2025-12-03 08:14:16]  *** Listing of results directory ***
[2025-12-03 08:14:16] total 1049694
[2025-12-03 08:14:16] -rw-r--r-- 1 boinc boinc    576529 Nov 30 01:16 pilot3.tar.gz
[2025-12-03 08:14:16] -rwx------ 1 boinc boinc     36292 Nov 30 01:18 runpilot2-wrapper.sh
[2025-12-03 08:14:16] -rw-r--r-- 1 boinc boinc      5112 Nov 30 01:23 queuedata.json
[2025-12-03 08:14:16] -rw-r--r-- 1 boinc boinc       100 Dec  3 00:44 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-03 08:14:16] -rwxr-xr-x 1 boinc boinc      7986 Dec  3 00:44 run_atlas
[2025-12-03 08:14:16] -rw-r--r-- 1 boinc boinc       105 Dec  3 00:44 job.xml
[2025-12-03 08:14:16] -rw-r--r-- 2 boinc boinc     15847 Dec  3 00:44 start_atlas.sh
[2025-12-03 08:14:16] drwxrwx--x 2 boinc boinc         5 Dec  3 00:44 shared
[2025-12-03 08:14:16] -rw-r--r-- 2 boinc boinc    590137 Dec  3 00:44 input.tar.gz
[2025-12-03 08:14:16] -rw-r--r-- 1 boinc boinc      6795 Dec  3 00:44 init_data.xml
[2025-12-03 08:14:16] -rw-r--r-- 2 boinc boinc 378183658 Dec  3 00:44 EVNT.47530720._000125.pool.root.1
[2025-12-03 08:14:16] -rw-r--r-- 1 boinc boinc         0 Dec  3 00:44 boinc_lockfile
[2025-12-03 08:14:16] -rw-r--r-- 1 boinc boinc      2876 Dec  3 00:44 pandaJob.out
[2025-12-03 08:14:16] -rw------- 1 boinc boinc        56 Dec  3 00:44 setup.sh.local
[2025-12-03 08:14:16] -rw------- 1 boinc boinc    989284 Dec  3 00:45 agis_schedconf.cvmfs.json
[2025-12-03 08:14:16] drwx------ 5 boinc boinc        22 Dec  3 00:45 pilot3
[2025-12-03 08:14:16] -rw-r--r-- 1 boinc boinc       533 Dec  3 08:08 boinc_task_state.xml
[2025-12-03 08:14:16] -rw------- 1 boinc boinc 692864035 Dec  3 08:13 HITS.47530725._002641.pool.root.1
[2025-12-03 08:14:16] -rw------- 1 boinc boinc      1040 Dec  3 08:13 memory_monitor_summary.json
[2025-12-03 08:14:16] -rw------- 1 boinc boinc   1516240 Dec  3 08:13 agis_ddmendpoints.agis.ALL.json
[2025-12-03 08:14:16] -rw------- 1 boinc boinc   1553735 Dec  3 08:13 log.47530725._002641.job.log.tgz.1
[2025-12-03 08:14:16] -rw------- 1 boinc boinc     28679 Dec  3 08:13 heartbeat.json
[2025-12-03 08:14:16] -rw-r--r-- 1 boinc boinc      8192 Dec  3 08:13 boinc_mmap_file
[2025-12-03 08:14:16] -rw-r--r-- 1 boinc boinc        29 Dec  3 08:13 wrapper_checkpoint.txt
[2025-12-03 08:14:16] -rw------- 1 boinc boinc        95 Dec  3 08:14 pilot_heartbeat.json
[2025-12-03 08:14:16] -rw------- 1 boinc boinc      5086 Dec  3 08:14 pilotlog.txt
[2025-12-03 08:14:16] -rw------- 1 boinc boinc   3762065 Dec  3 08:14 log.47530725._002641.job.log.1
[2025-12-03 08:14:16] -rw------- 1 boinc boinc       353 Dec  3 08:14 output.list
[2025-12-03 08:14:16] -rw------- 1 boinc boinc       668 Dec  3 08:14 wmpNDmAKkj8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm12LKDm0ygVfn.diag
[2025-12-03 08:14:16] -rw-r--r-- 1 boinc boinc      9465 Dec  3 08:14 runtime_log.err
[2025-12-03 08:14:16] -rw-r--r-- 1 boinc boinc       620 Dec  3 08:14 runtime_log
[2025-12-03 08:14:16] -rw------- 1 boinc boinc   5355520 Dec  3 08:14 result.tar.gz
[2025-12-03 08:14:16] -rw-r--r-- 1 boinc boinc     20925 Dec  3 08:14 stderr.txt
[2025-12-03 08:14:16] HITS file was successfully produced:
[2025-12-03 08:14:16] -rw------- 1 boinc boinc 692864035 Dec  3 08:13 shared/HITS.pool.root.1
[2025-12-03 08:14:16]  *** Contents of shared directory: ***
[2025-12-03 08:14:16] total 1047162
[2025-12-03 08:14:16] -rw-r--r-- 2 boinc boinc     15847 Dec  3 00:44 start_atlas.sh
[2025-12-03 08:14:16] -rw-r--r-- 2 boinc boinc    590137 Dec  3 00:44 input.tar.gz
[2025-12-03 08:14:16] -rw-r--r-- 2 boinc boinc 378183658 Dec  3 00:44 ATLAS.root_0
[2025-12-03 08:14:16] -rw------- 1 boinc boinc 692864035 Dec  3 08:13 HITS.pool.root.1
[2025-12-03 08:14:16] -rw------- 1 boinc boinc   5355520 Dec  3 08:14 result.tar.gz
08:14:18 (83178): run_atlas exited; CPU time 139960.329587
08:14:18 (83178): called boinc_finish(0)

</stderr_txt>
]]>

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