Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
04:35:28 (1764700): wrapper (7.7.26015): starting
04:35:28 (1764700): wrapper: running run_atlas (--nthreads 3)
[2025-12-04 04:35:28] Arguments: --nthreads 3
[2025-12-04 04:35:28] Threads: 3
[2025-12-04 04:35:28] Checking for CVMFS
[2025-12-04 04:35:28] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-04 04:35:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-04 04:35:28] Running cvmfs_config stat atlas.cern.ch
[2025-12-04 04:35:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-04 04:35:28] 2.9.2.0 2923852 22401 101376 153622 2 81 19882773 36864000 0 130560 2 8418745 99.958 974573 724 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-12-04 04:35:28] CVMFS is ok
[2025-12-04 04:35:28] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-04 04:35:28] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-04 04:35:28] Further information can be found at the LHC@home message board.
[2025-12-04 04:35:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-04 04:35:28] Checking for apptainer binary...
[2025-12-04 04:35:28] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-04 04:35:28] Running /usr/bin/apptainer --version
[2025-12-04 04:35:28] apptainer version 1.4.1-1.1
[2025-12-04 04:35:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-04 04:35:28] magicA161a
[2025-12-04 04:35:28] apptainer works
[2025-12-04 04:35:28] Set ATHENA_PROC_NUMBER=3
[2025-12-04 04:35:28] Set ATHENA_CORE_NUMBER=3
[2025-12-04 04:35:28] Starting ATLAS job with PandaID=6894258270
[2025-12-04 04:35:28] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-04 12:24:28]  *** The last 200 lines of the pilot log: ***
[2025-12-04 12:24:28] 2025-12-04 11:23:56,855 | INFO     | process IDs to be killed: [1774862] (in reverse order)
[2025-12-04 12:24:28] 2025-12-04 11:23:56,878 | WARNING  | found no corresponding commands to process id(s)
[2025-12-04 12:24:28] 2025-12-04 11:23:56,878 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-04 12:24:28] 2025-12-04 11:23:56,879 | INFO     | did not find any defunct processes belonging to 1774862
[2025-12-04 12:24:28] 2025-12-04 11:23:56,880 | INFO     | did not find any defunct processes belonging to 1774862
[2025-12-04 12:24:28] 2025-12-04 11:23:56,881 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-04 12:24:28] 2025-12-04 11:23:56,881 | INFO     | ready for new job
[2025-12-04 12:24:28] 2025-12-04 11:23:56,881 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-04 12:24:28] 2025-12-04 11:23:56,882 | INFO     | ***************************************
[2025-12-04 12:24:28] 2025-12-04 11:23:56,882 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-04 12:24:28] 2025-12-04 11:23:56,882 | INFO     | ***************************************
[2025-12-04 12:24:28] 2025-12-04 11:23:56,882 | INFO     | 
[2025-12-04 12:24:28] 2025-12-04 11:23:56,883 | INFO     | architecture information:
[2025-12-04 12:24:28] 2025-12-04 11:23:56,883 | INFO     | executing command: cat /etc/os-release
[2025-12-04 12:24:28] 2025-12-04 11:23:56,891 | INFO     | cat /etc/os-release:
[2025-12-04 12:24:28] NAME="CentOS Linux"
[2025-12-04 12:24:28] VERSION="7 (Core)"
[2025-12-04 12:24:28] ID="centos"
[2025-12-04 12:24:28] ID_LIKE="rhel fedora"
[2025-12-04 12:24:28] VERSION_ID="7"
[2025-12-04 12:24:28] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-04 12:24:28] ANSI_COLOR="0;31"
[2025-12-04 12:24:28] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-04 12:24:28] HOME_URL="https://www.centos.org/"
[2025-12-04 12:24:28] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-04 12:24:28] 
[2025-12-04 12:24:28] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-04 12:24:28] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-04 12:24:28] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-04 12:24:28] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-04 12:24:28] 
[2025-12-04 12:24:28] 2025-12-04 11:23:56,891 | INFO     | ***************************************
[2025-12-04 12:24:28] 2025-12-04 11:23:57,394 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-12-04 12:24:28] 2025-12-04 11:23:57,407 | INFO     | sufficient remaining disk space (383682347008 B)
[2025-12-04 12:24:28] 2025-12-04 11:23:57,407 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-04 12:24:28] 2025-12-04 11:23:57,407 | INFO     | current server update state: UPDATING_FINAL
[2025-12-04 12:24:28] 2025-12-04 11:23:57,407 | INFO     | update_server=False
[2025-12-04 12:24:28] 2025-12-04 11:23:57,407 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-04 12:24:28] 2025-12-04 11:23:57,407 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-04 12:24:28] 2025-12-04 11:23:57,407 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-04 12:24:28] 2025-12-04 11:23:57,766 | INFO     | all payload control threads have been joined
[2025-12-04 12:24:28] 2025-12-04 11:23:58,005 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-04 12:24:28] 2025-12-04 11:23:58,005 | INFO     | aborting loop
[2025-12-04 12:24:28] 2025-12-04 11:23:58,103 | INFO     | all data control threads have been joined
[2025-12-04 12:24:28] 2025-12-04 11:23:58,413 | INFO     | [job] retrieve thread has finished
[2025-12-04 12:24:28] 2025-12-04 11:23:58,413 | INFO     | [job] queue monitor thread has finished
[2025-12-04 12:24:28] 2025-12-04 11:23:58,433 | INFO     | all job control threads have been joined
[2025-12-04 12:24:28] 2025-12-04 11:23:58,534 | INFO     | [payload] execute_payloads thread has finished
[2025-12-04 12:24:28] 2025-12-04 11:23:58,684 | INFO     | [data] copytool_in thread has finished
[2025-12-04 12:24:28] 2025-12-04 11:23:58,772 | INFO     | [payload] control thread has finished
[2025-12-04 12:24:28] 2025-12-04 11:23:59,011 | INFO     | [job] job monitor thread has finished
[2025-12-04 12:24:28] 2025-12-04 11:23:59,109 | INFO     | [data] control thread has finished
[2025-12-04 12:24:28] 2025-12-04 11:23:59,199 | INFO     | [job] create_data_payload thread has finished
[2025-12-04 12:24:28] 2025-12-04 11:23:59,199 | INFO     | [payload] validate_pre thread has finished
[2025-12-04 12:24:28] 2025-12-04 11:23:59,413 | INFO     | [data] copytool_out thread has finished
[2025-12-04 12:24:28] 2025-12-04 11:23:59,438 | INFO     | [job] validate thread has finished
[2025-12-04 12:24:28] 2025-12-04 11:23:59,439 | INFO     | [job] control thread has finished
[2025-12-04 12:24:28] 2025-12-04 11:23:59,465 | INFO     | [payload] validate_post thread has finished
[2025-12-04 12:24:28] 2025-12-04 11:23:59,644 | INFO     | [payload] failed_post thread has finished
[2025-12-04 12:24:28] 2025-12-04 11:24:00,084 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-04 12:24:28] 2025-12-04 11:24:04,091 | INFO     | [data] queue_monitor thread has finished
[2025-12-04 12:24:28] 2025-12-04 11:24:07,133 | INFO     | [monitor] cgroup control has ended
[2025-12-04 12:24:28] 2025-12-04 11:24:07,924 | INFO     | job.realtimelogging is not enabled
[2025-12-04 12:24:28] 2025-12-04 11:24:08,930 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-04 12:24:28] 2025-12-04 11:24:10,482 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139997463959360)>', '<ExcThread(monitor, started 139997118187264)>']
[2025-12-04 12:24:28] 2025-12-04 11:24:15,508 | INFO     | all workflow threads have been joined
[2025-12-04 12:24:28] 2025-12-04 11:24:15,508 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-04 12:24:28] 2025-12-04 11:24:15,508 | INFO     | traces error code: 0
[2025-12-04 12:24:28] 2025-12-04 11:24:15,508 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-04 12:24:28] 2025-12-04 11:24:27,915 | INFO     | PID=1768419 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-04 12:24:28] 2025-12-04 11:24:27,915 | INFO     | found 0 job(s) in 20 queues
[2025-12-04 12:24:28] 2025-12-04 11:24:27,915 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-04 12:24:28] 2025-12-04 11:24:27,915 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-04 12:24:28] 2025-12-04 11:24:27,915 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-04 12:24:28] 2025-12-04 11:24:27,915 | INFO     | [monitor] control thread has ended
[2025-12-04 12:24:28] 2025-12-04 11:24:27,961 [wrapper] ==== pilot stdout END ====
[2025-12-04 12:24:28] 2025-12-04 11:24:27,963 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-04 12:24:28] 2025-12-04 11:24:27,966 [wrapper] pilotpid: 1768419
[2025-12-04 12:24:28] 2025-12-04 11:24:27,968 [wrapper] Pilot exit status: 0
[2025-12-04 12:24:28] 2025-12-04 11:24:27,975 [wrapper] pandaids: 6894258270
[2025-12-04 12:24:28] 2025-12-04 11:24:27,991 [wrapper] cleanup supervisor_pilot 1824919 1768420
[2025-12-04 12:24:28] 2025-12-04 11:24:27,993 [wrapper] Test setup, not cleaning
[2025-12-04 12:24:28] 2025-12-04 11:24:27,996 [wrapper] apfmon messages muted
[2025-12-04 12:24:28] 2025-12-04 11:24:27,998 [wrapper] ==== wrapper stdout END ====
[2025-12-04 12:24:28] 2025-12-04 11:24:28,000 [wrapper] ==== wrapper stderr END ====
[2025-12-04 12:24:28]  *** Error codes and diagnostics ***
[2025-12-04 12:24:28]     "exeErrorCode": 0,
[2025-12-04 12:24:28]     "exeErrorDiag": "",
[2025-12-04 12:24:28]     "pilotErrorCode": 0,
[2025-12-04 12:24:28]     "pilotErrorDiag": "",
[2025-12-04 12:24:28]  *** Listing of results directory ***
[2025-12-04 12:24:28] total 1312176
[2025-12-04 12:24:28] -rw-r--r-- 1 boinc boinc    576529 Nov 21 04:09 pilot3.tar.gz
[2025-12-04 12:24:28] -rwx------ 1 boinc boinc     36292 Nov 21 04:54 runpilot2-wrapper.sh
[2025-12-04 12:24:28] -rw-r--r-- 1 boinc boinc      5112 Nov 21 04:54 queuedata.json
[2025-12-04 12:24:28] -rw-r--r-- 1 boinc boinc       100 Dec  4 04:35 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-04 12:24:28] -rwxr-xr-x 1 boinc boinc      7986 Dec  4 04:35 run_atlas
[2025-12-04 12:24:28] -rw-r--r-- 1 boinc boinc       105 Dec  4 04:35 job.xml
[2025-12-04 12:24:28] -rw-r--r-- 2 boinc boinc 411176860 Dec  4 04:35 EVNT.47493127._002174.pool.root.1
[2025-12-04 12:24:28] -rw-r--r-- 2 boinc boinc    590102 Dec  4 04:35 input.tar.gz
[2025-12-04 12:24:28] -rw-r--r-- 2 boinc boinc     15847 Dec  4 04:35 start_atlas.sh
[2025-12-04 12:24:28] drwxrwx--x 2 boinc boinc      4096 Dec  4 04:35 shared
[2025-12-04 12:24:28] -rw-r--r-- 1 boinc boinc         0 Dec  4 04:35 boinc_setup_complete
[2025-12-04 12:24:28] -rw-r--r-- 1 boinc boinc      6449 Dec  4 04:35 init_data.xml
[2025-12-04 12:24:28] -rw-r--r-- 1 boinc boinc         0 Dec  4 04:35 boinc_lockfile
[2025-12-04 12:24:28] -rw-r--r-- 1 boinc boinc      2782 Dec  4 04:35 pandaJob.out
[2025-12-04 12:24:28] -rw------- 1 boinc boinc    985556 Dec  4 04:35 agis_schedconf.cvmfs.json
[2025-12-04 12:24:28] drwx------ 5 boinc boinc      4096 Dec  4 04:35 pilot3
[2025-12-04 12:24:28] -rw-r--r-- 1 boinc boinc       531 Dec  4 12:20 boinc_task_state.xml
[2025-12-04 12:24:28] -rw------- 1 boinc boinc 918371641 Dec  4 12:23 HITS.47533967._001451.pool.root.1
[2025-12-04 12:24:28] -rw------- 1 boinc boinc      1020 Dec  4 12:23 memory_monitor_summary.json
[2025-12-04 12:24:28] -rw------- 1 boinc boinc   1516240 Dec  4 12:23 agis_ddmendpoints.agis.ALL.json
[2025-12-04 12:24:28] -rw------- 1 boinc boinc   1157856 Dec  4 12:23 log.47533967._001451.job.log.tgz.1
[2025-12-04 12:24:28] -rw------- 1 boinc boinc        95 Dec  4 12:23 pilot_heartbeat.json
[2025-12-04 12:24:28] -rw------- 1 boinc boinc      8565 Dec  4 12:23 heartbeat.json
[2025-12-04 12:24:28] -rw-r--r-- 1 boinc boinc      8192 Dec  4 12:24 boinc_mmap_file
[2025-12-04 12:24:28] -rw-r--r-- 1 boinc boinc        28 Dec  4 12:24 wrapper_checkpoint.txt
[2025-12-04 12:24:28] -rw------- 1 boinc boinc       747 Dec  4 12:24 pilotlog.txt
[2025-12-04 12:24:28] -rw------- 1 boinc boinc   3957187 Dec  4 12:24 log.47533967._001451.job.log.1
[2025-12-04 12:24:28] -rw------- 1 boinc boinc       353 Dec  4 12:24 output.list
[2025-12-04 12:24:28] -rw-r--r-- 1 boinc boinc       620 Dec  4 12:24 runtime_log
[2025-12-04 12:24:28] -rw------- 1 boinc boinc   5130240 Dec  4 12:24 result.tar.gz
[2025-12-04 12:24:28] -rw-r--r-- 1 boinc boinc      8918 Dec  4 12:24 runtime_log.err
[2025-12-04 12:24:28] -rw------- 1 boinc boinc       669 Dec  4 12:24 lJiKDmVPXg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm6yIKDmQxSirm.diag
[2025-12-04 12:24:28] -rw-r--r-- 1 boinc boinc     10406 Dec  4 12:24 stderr.txt
[2025-12-04 12:24:28] HITS file was successfully produced:
[2025-12-04 12:24:28] -rw------- 1 boinc boinc 918371641 Dec  4 12:23 shared/HITS.pool.root.1
[2025-12-04 12:24:28]  *** Contents of shared directory: ***
[2025-12-04 12:24:28] total 1304004
[2025-12-04 12:24:28] -rw-r--r-- 2 boinc boinc 411176860 Dec  4 04:35 ATLAS.root_0
[2025-12-04 12:24:28] -rw-r--r-- 2 boinc boinc    590102 Dec  4 04:35 input.tar.gz
[2025-12-04 12:24:28] -rw-r--r-- 2 boinc boinc     15847 Dec  4 04:35 start_atlas.sh
[2025-12-04 12:24:28] -rw------- 1 boinc boinc 918371641 Dec  4 12:23 HITS.pool.root.1
[2025-12-04 12:24:28] -rw------- 1 boinc boinc   5130240 Dec  4 12:24 result.tar.gz
12:24:29 (1764700): run_atlas exited; CPU time 82954.306022
12:24:29 (1764700): called boinc_finish(0)

</stderr_txt>
]]>

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