Stderr output

<core_client_version>7.18.1</core_client_version>
<![CDATA[
<stderr_txt>
22:13:27 (70354): wrapper (7.7.26015): starting
22:13:27 (70354): wrapper: running run_atlas (--nthreads 6)
[2025-12-01 22:13:27] Arguments: --nthreads 6
[2025-12-01 22:13:27] Threads: 6
[2025-12-01 22:13:27] Checking for CVMFS
[2025-12-01 22:13:33] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-01 22:13:33] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-01 22:13:33] Running cvmfs_config stat atlas.cern.ch
[2025-12-01 22:13:33] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-01 22:13:33] 2.11.5.0 8833 13 49716 153531 2 110 3641611 4194304 2395 130560 0 191629 99.990 3565 953 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.3.250:3128 1
[2025-12-01 22:13:33] CVMFS is ok
[2025-12-01 22:13:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-01 22:13:33] Checking for apptainer binary...
[2025-12-01 22:13:33] apptainer is not installed, using version from CVMFS
[2025-12-01 22:13:33] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-01 22:13:33] boinc-b450f
[2025-12-01 22:13:33] apptainer works
[2025-12-01 22:13:33] Set ATHENA_PROC_NUMBER=6
[2025-12-01 22:13:33] Set ATHENA_CORE_NUMBER=6
[2025-12-01 22:13:33] Starting ATLAS job with PandaID=6905332075
[2025-12-01 22:13:33] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-02 08:40:02]  *** The last 200 lines of the pilot log: ***
[2025-12-02 08:40:02] 2025-12-02 07:39:15,428 | INFO     | found 12 cores (12 cores per socket, 1 socket) HT, CPU MHz: 3820.2744583333338
[2025-12-02 08:40:02] 2025-12-02 07:39:15,430 | INFO     | using path: /var/lib/boinc-client/slots/2/PanDA_Pilot-6905332075/memory_monitor_summary.json (trf name=prmon)
[2025-12-02 08:40:02] 2025-12-02 07:39:15,431 | INFO     | extracted standard info from prmon json
[2025-12-02 08:40:02] 2025-12-02 07:39:15,431 | INFO     | extracted standard memory fields from prmon json
[2025-12-02 08:40:02] 2025-12-02 07:39:15,431 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-02 08:40:02] 2025-12-02 07:39:15,448 | INFO     | fitting pss+swap vs Time
[2025-12-02 08:40:02] 2025-12-02 07:39:15,449 | INFO     | sum of square deviations: 72127789580.0
[2025-12-02 08:40:02] 2025-12-02 07:39:15,455 | INFO     | sum of deviations: 565508057046.0002
[2025-12-02 08:40:02] 2025-12-02 07:39:15,455 | INFO     | mean x: 1764642391.0
[2025-12-02 08:40:02] 2025-12-02 07:39:15,455 | INFO     | mean y: 3026024.3658536584
[2025-12-02 08:40:02] 2025-12-02 07:39:15,456 | INFO     | intersect: -13832410992.715937
[2025-12-02 08:40:02] 2025-12-02 07:39:15,456 | INFO     | chi2: 4.620157836501325
[2025-12-02 08:40:02] 2025-12-02 07:39:15,457 | INFO     | sum of square deviations: 70382835932.5
[2025-12-02 08:40:02] 2025-12-02 07:39:15,463 | INFO     | sum of deviations: 731561666871.0
[2025-12-02 08:40:02] 2025-12-02 07:39:15,463 | INFO     | mean x: 1764642238.5
[2025-12-02 08:40:02] 2025-12-02 07:39:15,463 | INFO     | mean y: 3040515.950819672
[2025-12-02 08:40:02] 2025-12-02 07:39:15,463 | INFO     | intersect: -18338712843.71916
[2025-12-02 08:40:02] 2025-12-02 07:39:15,464 | INFO     | chi2: 2.524098247013503
[2025-12-02 08:40:02] 2025-12-02 07:39:15,464 | INFO     | current chi2=2.524098247013503 (change=45.36770525301124 %)
[2025-12-02 08:40:02] 2025-12-02 07:39:15,464 | INFO     | sum of square deviations: 68666254910.0
[2025-12-02 08:40:02] 2025-12-02 07:39:15,472 | INFO     | sum of deviations: 738874352666.0
[2025-12-02 08:40:02] 2025-12-02 07:39:15,472 | INFO     | mean x: 1764642086.0
[2025-12-02 08:40:02] 2025-12-02 07:39:15,472 | INFO     | mean y: 3041155.2694214876
[2025-12-02 08:40:02] 2025-12-02 07:39:15,472 | INFO     | intersect: -18985161720.93765
[2025-12-02 08:40:02] 2025-12-02 07:39:15,472 | INFO     | chi2: 2.440606396896239
[2025-12-02 08:40:02] 2025-12-02 07:39:15,472 | INFO     | current chi2=2.440606396896239 (change=3.3077892358608127 %)
[2025-12-02 08:40:02] 2025-12-02 07:39:15,472 | INFO     | right removable region: 604
[2025-12-02 08:40:02] 2025-12-02 07:39:15,473 | INFO     | sum of square deviations: 70382835932.5
[2025-12-02 08:40:02] 2025-12-02 07:39:15,479 | INFO     | sum of deviations: 386775151036.5
[2025-12-02 08:40:02] 2025-12-02 07:39:15,479 | INFO     | monitor loop #2643: job 0:6905332075 is in state 'finished'
[2025-12-02 08:40:02] 2025-12-02 07:39:15,495 | INFO     | mean x: 1764642543.5
[2025-12-02 08:40:02] 2025-12-02 07:39:15,495 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 08:40:02] 2025-12-02 07:39:15,495 | INFO     | mean y: 3041613.1032786886
[2025-12-02 08:40:02] 2025-12-02 07:39:15,495 | INFO     | intersect: -9694207400.025581
[2025-12-02 08:40:02] 2025-12-02 07:39:15,496 | INFO     | chi2: 2.2980973066866324
[2025-12-02 08:40:02] 2025-12-02 07:39:15,496 | INFO     | current chi2=2.2980973066866324 (change=50.25933338184618 %)
[2025-12-02 08:40:02] 2025-12-02 07:39:15,496 | INFO     | sum of square deviations: 68666254910.0
[2025-12-02 08:40:02] 2025-12-02 07:39:15,503 | INFO     | sum of deviations: 350729950642.0001
[2025-12-02 08:40:02] 2025-12-02 07:39:15,503 | INFO     | mean x: 1764642696.0
[2025-12-02 08:40:02] 2025-12-02 07:39:15,503 | INFO     | mean y: 3044813.1867768597
[2025-12-02 08:40:02] 2025-12-02 07:39:15,503 | INFO     | intersect: -9010306016.562822
[2025-12-02 08:40:02] 2025-12-02 07:39:15,503 | INFO     | chi2: 2.254546403120051
[2025-12-02 08:40:02] 2025-12-02 07:39:15,504 | INFO     | current chi2=2.254546403120051 (change=1.895085270752632 %)
[2025-12-02 08:40:02] 2025-12-02 07:39:15,504 | INFO     | left removable region: 20
[2025-12-02 08:40:02] 2025-12-02 07:39:15,504 | INFO     | sum of square deviations: 61761195210.0
[2025-12-02 08:40:02] 2025-12-02 07:39:15,520 | INFO     | sum of deviations: 473495526414.49994
[2025-12-02 08:40:02] 2025-12-02 07:39:15,520 | INFO     | mean x: 1764642665.5
[2025-12-02 08:40:02] 2025-12-02 07:39:15,520 | INFO     | mean y: 3064971.758561644
[2025-12-02 08:40:02] 2025-12-02 07:39:15,520 | INFO     | intersect: -13525662977.77959
[2025-12-02 08:40:02] 2025-12-02 07:39:15,521 | INFO     | chi2: 0.035449230542807866
[2025-12-02 08:40:02] 2025-12-02 07:39:15,521 | INFO     | current memory leak: 7.67 B/s (using 584 data points, chi2=0.04)
[2025-12-02 08:40:02] 2025-12-02 07:39:15,522 | INFO     | could have reported an average CPU frequency of 3843 MHz (23 samples)
[2025-12-02 08:40:02] 2025-12-02 07:39:15,522 | INFO     | ..............................
[2025-12-02 08:40:02] 2025-12-02 07:39:15,522 | INFO     | . Timing measurements:
[2025-12-02 08:40:02] 2025-12-02 07:39:15,522 | INFO     | . get job = 0 s
[2025-12-02 08:40:02] 2025-12-02 07:39:15,522 | INFO     | . initial setup = 2 s
[2025-12-02 08:40:02] 2025-12-02 07:39:15,522 | INFO     | . payload setup = 12 s
[2025-12-02 08:40:02] 2025-12-02 07:39:15,522 | INFO     | . stage-in = 0 s
[2025-12-02 08:40:02] 2025-12-02 07:39:15,522 | INFO     | . payload execution = 37484 s
[2025-12-02 08:40:02] 2025-12-02 07:39:15,522 | INFO     | . stage-out = 3 s
[2025-12-02 08:40:02] 2025-12-02 07:39:15,522 | INFO     | . log creation = 0 s
[2025-12-02 08:40:02] 2025-12-02 07:39:15,522 | INFO     | ..............................
[2025-12-02 08:40:02] 2025-12-02 07:39:15,985 | INFO     | 
[2025-12-02 08:40:02] 2025-12-02 07:39:15,985 | INFO     | job summary report
[2025-12-02 08:40:02] 2025-12-02 07:39:15,985 | INFO     | --------------------------------------------------
[2025-12-02 08:40:02] 2025-12-02 07:39:15,985 | INFO     | PanDA job id: 6905332075
[2025-12-02 08:40:02] 2025-12-02 07:39:15,985 | INFO     | task id: 47530725
[2025-12-02 08:40:02] 2025-12-02 07:39:15,985 | INFO     | errors: (none)
[2025-12-02 08:40:02] 2025-12-02 07:39:15,985 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-02 08:40:02] 2025-12-02 07:39:15,985 | INFO     | pilot state: finished 
[2025-12-02 08:40:02] 2025-12-02 07:39:15,985 | INFO     | transexitcode: 0
[2025-12-02 08:40:02] 2025-12-02 07:39:15,985 | INFO     | exeerrorcode: 0
[2025-12-02 08:40:02] 2025-12-02 07:39:15,985 | INFO     | exeerrordiag: 
[2025-12-02 08:40:02] 2025-12-02 07:39:15,986 | INFO     | exitcode: 0
[2025-12-02 08:40:02] 2025-12-02 07:39:15,986 | INFO     | exitmsg: OK
[2025-12-02 08:40:02] 2025-12-02 07:39:15,986 | INFO     | cpuconsumptiontime: 144071 s
[2025-12-02 08:40:02] 2025-12-02 07:39:15,986 | INFO     | nevents: 1000
[2025-12-02 08:40:02] 2025-12-02 07:39:15,986 | INFO     | neventsw: 0
[2025-12-02 08:40:02] 2025-12-02 07:39:15,986 | INFO     | pid: 109449
[2025-12-02 08:40:02] 2025-12-02 07:39:15,986 | INFO     | pgrp: 109449
[2025-12-02 08:40:02] 2025-12-02 07:39:15,986 | INFO     | corecount: 6
[2025-12-02 08:40:02] 2025-12-02 07:39:15,986 | INFO     | event service: False
[2025-12-02 08:40:02] 2025-12-02 07:39:15,986 | INFO     | sizes: {0: 2283570, 1: 2284433, 5: 2284695, 12: 2284751, 37500: 2345392, 37504: 2354584, 37511: 2354774}
[2025-12-02 08:40:02] 2025-12-02 07:39:15,986 | INFO     | --------------------------------------------------
[2025-12-02 08:40:02] 2025-12-02 07:39:15,986 | INFO     | 
[2025-12-02 08:40:02] 2025-12-02 07:39:15,986 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/2
[2025-12-02 08:40:02] 2025-12-02 07:39:16,057 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-02 08:40:02] 2025-12-02 07:39:16,057 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-02 08:40:02] 2025-12-02 07:39:16,057 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-02 08:40:02] 2025-12-02 07:39:16,057 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-02 08:40:02] 2025-12-02 07:39:16,057 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-02 08:40:02] 2025-12-02 07:39:16,057 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-02 08:40:02] 2025-12-02 07:39:16,057 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-02 08:40:02] 2025-12-02 07:39:16,057 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-02 08:40:02] 2025-12-02 07:39:16,057 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-02 08:40:02] 2025-12-02 07:39:16,057 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-02 08:40:02] 2025-12-02 07:39:16,057 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-02 08:40:02] 2025-12-02 07:39:16,057 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-02 08:40:02] 2025-12-02 07:39:16,058 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-02 08:40:02] 2025-12-02 07:39:16,058 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-02 08:40:02] 2025-12-02 07:39:16,058 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-02 08:40:02] 2025-12-02 07:39:16,058 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-02 08:40:02] 2025-12-02 07:39:16,058 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-02 08:40:02] 2025-12-02 07:39:16,058 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-02 08:40:02] 2025-12-02 07:39:16,058 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-02 08:40:02] 2025-12-02 07:39:16,058 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-02 08:40:02] 2025-12-02 07:39:16,058 | INFO     | job 6905332075 has completed (purged errors)
[2025-12-02 08:40:02] 2025-12-02 07:39:16,058 | INFO     | overall cleanup function is called
[2025-12-02 08:40:02] 2025-12-02 07:39:17,065 | INFO     | --- collectZombieJob: --- 10, [109449]
[2025-12-02 08:40:02] 2025-12-02 07:39:17,065 | INFO     | zombie collector waiting for pid 109449
[2025-12-02 08:40:02] 2025-12-02 07:39:17,065 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-02 08:40:02] 2025-12-02 07:39:17,065 | INFO     | collected zombie processes
[2025-12-02 08:40:02] 2025-12-02 07:39:17,065 | INFO     | will attempt to kill all subprocesses of pid=109449
[2025-12-02 08:40:02] 2025-12-02 07:39:17,165 | INFO     | process IDs to be killed: [109449] (in reverse order)
[2025-12-02 08:40:02] 2025-12-02 07:39:17,274 | WARNING  | found no corresponding commands to process id(s)
[2025-12-02 08:40:02] 2025-12-02 07:39:17,274 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-02 08:40:02] 2025-12-02 07:39:17,278 | INFO     | did not find any defunct processes belonging to 109449
[2025-12-02 08:40:02] 2025-12-02 07:39:17,280 | INFO     | did not find any defunct processes belonging to 109449
[2025-12-02 08:40:02] 2025-12-02 07:39:17,281 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-02 08:40:02] 2025-12-02 07:39:17,281 | INFO     | ready for new job
[2025-12-02 08:40:02] 2025-12-02 07:39:17,281 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-02 08:40:02] 2025-12-02 07:39:17,281 | INFO     | ***************************************
[2025-12-02 08:40:02] 2025-12-02 07:39:17,282 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-02 08:40:02] 2025-12-02 07:39:17,282 | INFO     | ***************************************
[2025-12-02 08:40:02] 2025-12-02 07:39:17,282 | INFO     | 
[2025-12-02 08:40:02] 2025-12-02 07:39:17,282 | INFO     | architecture information:
[2025-12-02 08:40:02] 2025-12-02 07:39:17,305 | INFO     | executing command: cat /etc/os-release
[2025-12-02 08:40:02] 2025-12-02 07:39:17,356 | INFO     | cat /etc/os-release:
[2025-12-02 08:40:02] NAME="CentOS Linux"
[2025-12-02 08:40:02] VERSION="7 (Core)"
[2025-12-02 08:40:02] ID="centos"
[2025-12-02 08:40:02] ID_LIKE="rhel fedora"
[2025-12-02 08:40:02] VERSION_ID="7"
[2025-12-02 08:40:02] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-02 08:40:02] ANSI_COLOR="0;31"
[2025-12-02 08:40:02] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-02 08:40:02] HOME_URL="https://www.centos.org/"
[2025-12-02 08:40:02] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-02 08:40:02] 
[2025-12-02 08:40:02] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-02 08:40:02] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-02 08:40:02] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-02 08:40:02] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-02 08:40:02] 
[2025-12-02 08:40:02] 2025-12-02 07:39:17,357 | INFO     | ***************************************
[2025-12-02 08:40:02] 2025-12-02 07:39:17,859 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/2
[2025-12-02 08:40:02] 2025-12-02 07:39:17,900 | INFO     | sufficient remaining disk space (14611906560 B)
[2025-12-02 08:40:02] 2025-12-02 07:39:17,900 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-02 08:40:02] 2025-12-02 07:39:17,900 | INFO     | current server update state: UPDATING_FINAL
[2025-12-02 08:40:02] 2025-12-02 07:39:17,900 | INFO     | update_server=False
[2025-12-02 08:40:02] 2025-12-02 07:39:17,900 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-02 08:40:02] 2025-12-02 07:39:17,905 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-02 08:40:02] 2025-12-02 07:39:17,997 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-12-02 08:40:02] 2025-12-02 07:39:17,997 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-12-02 08:40:02] 2025-12-02 07:39:17,998 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-02 08:40:02] 2025-12-02 07:39:17,998 | INFO     | will abort loop
[2025-12-02 08:40:02] 2025-12-02 07:39:18,281 | INFO     | all payload control threads have been joined
[2025-12-02 08:40:02] 2025-12-02 07:39:18,479 | INFO     | all data control threads have been joined
[2025-12-02 08:40:02] 2025-12-02 07:39:18,779 | INFO     | all job control threads have been joined
[2025-12-02 08:40:02] 2025-12-02 07:39:18,905 | INFO     | [job] retrieve thread has finished
[2025-12-02 08:40:02] 2025-12-02 07:39:18,955 | INFO     | [payload] failed_post thread has finished
[2025-12-02 08:40:02] 2025-12-02 07:39:18,999 | INFO     | [job] job monitor thread has finished
[2025-12-02 08:40:02] 2025-12-02 07:39:19,285 | INFO     | [payload] control thread has finished
[2025-12-02 08:40:02] 2025-12-02 07:39:19,365 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-02 08:40:02] 2025-12-02 07:39:19,399 | INFO     | [payload] validate_post thread has finished
[2025-12-02 08:40:02] 2025-12-02 07:39:19,484 | INFO     | [data] control thread has finished
[2025-12-02 08:40:02] 2025-12-02 07:39:19,562 | INFO     | [payload] validate_pre thread has finished
[2025-12-02 08:40:02] 2025-12-02 07:39:19,647 | INFO     | [job] create_data_payload thread has finished
[2025-12-02 08:40:02] 2025-12-02 07:39:19,688 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-02 08:40:02] 2025-12-02 07:39:19,784 | INFO     | [job] control thread has finished
[2025-12-02 08:40:02] 2025-12-02 07:39:19,925 | INFO     | [data] copytool_out thread has finished
[2025-12-02 08:40:02] 2025-12-02 07:39:19,935 | INFO     | [payload] execute_payloads thread has finished
[2025-12-02 08:40:02] 2025-12-02 07:39:20,003 | INFO     | [job] validate thread has finished
[2025-12-02 08:40:02] 2025-12-02 07:39:20,035 | INFO     | [data] copytool_in thread has finished
[2025-12-02 08:40:02] 2025-12-02 07:39:20,627 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-02 08:40:02] 2025-12-02 07:39:21,627 | INFO     | [job] queue monitor thread has finished
[2025-12-02 08:40:02] 2025-12-02 07:39:23,693 | INFO     | [data] queue_monitor thread has finished
[2025-12-02 08:40:02] 2025-12-02 07:39:47,624 | INFO     | PID=82337 has CPU usage=4.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-02 08:40:02] 2025-12-02 07:39:47,625 | INFO     | .. there are 2 such processes running
[2025-12-02 08:40:02] 2025-12-02 07:39:47,625 | INFO     | found 0 job(s) in 20 queues
[2025-12-02 08:40:02] 2025-12-02 07:39:47,625 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-02 08:40:02] 2025-12-02 07:39:47,625 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-02 08:40:02] 2025-12-02 07:39:56,455 | INFO     | [monitor] cgroup control has ended
[2025-12-02 08:40:02] 2025-12-02 07:39:56,880 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140085218776896)>', '<ExcThread(monitor, started 140084309387008)>']
[2025-12-02 08:40:02] 2025-12-02 07:39:57,675 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-02 08:40:02] 2025-12-02 07:39:57,675 | INFO     | [monitor] control thread has ended
[2025-12-02 08:40:02] 2025-12-02 07:40:01,905 | INFO     | all workflow threads have been joined
[2025-12-02 08:40:02] 2025-12-02 07:40:01,905 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-02 08:40:02] 2025-12-02 07:40:01,905 | INFO     | traces error code: 0
[2025-12-02 08:40:02] 2025-12-02 07:40:01,905 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-02 08:40:02] 2025-12-02 07:40:01,976 [wrapper] ==== pilot stdout END ====
[2025-12-02 08:40:02] 2025-12-02 07:40:01,996 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-02 08:40:02] 2025-12-02 07:40:02,016 [wrapper] pilotpid: 82337
[2025-12-02 08:40:02] 2025-12-02 07:40:02,036 [wrapper] Pilot exit status: 0
[2025-12-02 08:40:02] 2025-12-02 07:40:02,095 [wrapper] pandaids: 6905332075
[2025-12-02 08:40:02] 2025-12-02 07:40:02,115 [wrapper] cleanup supervisor_pilot  369121 82338
[2025-12-02 08:40:02] 2025-12-02 07:40:02,116 [wrapper] Test setup, not cleaning
[2025-12-02 08:40:02] 2025-12-02 07:40:02,117 [wrapper] apfmon messages muted
[2025-12-02 08:40:02] 2025-12-02 07:40:02,119 [wrapper] ==== wrapper stdout END ====
[2025-12-02 08:40:02] 2025-12-02 07:40:02,120 [wrapper] ==== wrapper stderr END ====
[2025-12-02 08:40:02]  *** Error codes and diagnostics ***
[2025-12-02 08:40:02]     "exeErrorCode": 0,
[2025-12-02 08:40:02]     "exeErrorDiag": "",
[2025-12-02 08:40:02]     "pilotErrorCode": 0,
[2025-12-02 08:40:02]     "pilotErrorDiag": "",
[2025-12-02 08:40:02]  *** Listing of results directory ***
[2025-12-02 08:40:02] total 1048514
[2025-12-02 08:40:02] -rw-r--r-- 1 boinc boinc    576529 Nov 30 01:16 pilot3.tar.gz
[2025-12-02 08:40:02] -rwx------ 1 boinc boinc     36292 Nov 30 01:18 runpilot2-wrapper.sh
[2025-12-02 08:40:02] -rw-r--r-- 1 boinc boinc      5112 Nov 30 01:18 queuedata.json
[2025-12-02 08:40:02] -rw-r--r-- 1 boinc boinc       100 Dec  1 22:13 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-02 08:40:02] -rwxr-xr-x 1 boinc boinc      7986 Dec  1 22:13 run_atlas
[2025-12-02 08:40:02] -rw-r--r-- 1 boinc boinc       105 Dec  1 22:13 job.xml
[2025-12-02 08:40:02] -rw-r--r-- 1 boinc boinc      6795 Dec  1 22:13 init_data.xml
[2025-12-02 08:40:02] -rw-r--r-- 2 boinc boinc 374197818 Dec  1 22:13 EVNT.47530720._000032.pool.root.1
[2025-12-02 08:40:02] -rw-r--r-- 2 boinc boinc     15847 Dec  1 22:13 start_atlas.sh
[2025-12-02 08:40:02] drwxrwx--x 2 boinc boinc         5 Dec  1 22:13 shared
[2025-12-02 08:40:02] -rw-r--r-- 2 boinc boinc    590130 Dec  1 22:13 input.tar.gz
[2025-12-02 08:40:02] -rw-r--r-- 1 boinc boinc         0 Dec  1 22:13 boinc_lockfile
[2025-12-02 08:40:02] -rw-r--r-- 1 boinc boinc      2877 Dec  1 22:13 pandaJob.out
[2025-12-02 08:40:02] -rw------- 1 boinc boinc        56 Dec  1 22:13 setup.sh.local
[2025-12-02 08:40:02] -rw------- 1 boinc boinc    992004 Dec  1 22:13 agis_schedconf.cvmfs.json
[2025-12-02 08:40:02] drwx------ 5 boinc boinc        22 Dec  1 22:13 pilot3
[2025-12-02 08:40:02] -rw-r--r-- 1 boinc boinc       533 Dec  2 08:32 boinc_task_state.xml
[2025-12-02 08:40:02] -rw------- 1 boinc boinc 695435473 Dec  2 08:38 HITS.47530725._001818.pool.root.1
[2025-12-02 08:40:02] -rw------- 1 boinc boinc      1041 Dec  2 08:39 memory_monitor_summary.json
[2025-12-02 08:40:02] -rw------- 1 boinc boinc   1516240 Dec  2 08:39 agis_ddmendpoints.agis.ALL.json
[2025-12-02 08:40:02] -rw------- 1 boinc boinc   1682742 Dec  2 08:39 log.47530725._001818.job.log.tgz.1
[2025-12-02 08:40:02] -rw------- 1 boinc boinc     27270 Dec  2 08:39 heartbeat.json
[2025-12-02 08:40:02] -rw------- 1 boinc boinc        95 Dec  2 08:39 pilot_heartbeat.json
[2025-12-02 08:40:02] -rw-r--r-- 1 boinc boinc      8192 Dec  2 08:39 boinc_mmap_file
[2025-12-02 08:40:02] -rw-r--r-- 1 boinc boinc        29 Dec  2 08:39 wrapper_checkpoint.txt
[2025-12-02 08:40:02] -rw------- 1 boinc boinc      5014 Dec  2 08:40 pilotlog.txt
[2025-12-02 08:40:02] -rw------- 1 boinc boinc   5230183 Dec  2 08:40 log.47530725._001818.job.log.1
[2025-12-02 08:40:02] -rw------- 1 boinc boinc       353 Dec  2 08:40 output.list
[2025-12-02 08:40:02] -rw-r--r-- 1 boinc boinc       620 Dec  2 08:40 runtime_log
[2025-12-02 08:40:02] -rw------- 1 boinc boinc   6952960 Dec  2 08:40 result.tar.gz
[2025-12-02 08:40:02] -rw-r--r-- 1 boinc boinc     20967 Dec  2 08:40 stderr.txt
[2025-12-02 08:40:02] -rw-r--r-- 1 boinc boinc      9465 Dec  2 08:40 runtime_log.err
[2025-12-02 08:40:02] -rw------- 1 boinc boinc       668 Dec  2 08:40 pnqNDmxJkj8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmuIPKDmziiFcm.diag
[2025-12-02 08:40:02] HITS file was successfully produced:
[2025-12-02 08:40:02] -rw------- 1 boinc boinc 695435473 Dec  2 08:38 shared/HITS.pool.root.1
[2025-12-02 08:40:02]  *** Contents of shared directory: ***
[2025-12-02 08:40:02] total 1045769
[2025-12-02 08:40:02] -rw-r--r-- 2 boinc boinc 374197818 Dec  1 22:13 ATLAS.root_0
[2025-12-02 08:40:02] -rw-r--r-- 2 boinc boinc     15847 Dec  1 22:13 start_atlas.sh
[2025-12-02 08:40:02] -rw-r--r-- 2 boinc boinc    590130 Dec  1 22:13 input.tar.gz
[2025-12-02 08:40:02] -rw------- 1 boinc boinc 695435473 Dec  2 08:38 HITS.pool.root.1
[2025-12-02 08:40:02] -rw------- 1 boinc boinc   6952960 Dec  2 08:40 result.tar.gz
08:40:03 (70354): run_atlas exited; CPU time 144467.895045
08:40:03 (70354): called boinc_finish(0)

</stderr_txt>
]]>

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