Stderr output

<core_client_version>7.18.1</core_client_version>
<![CDATA[
<stderr_txt>
22:13:21 (69041): wrapper (7.7.26015): starting
22:13:21 (69041): wrapper: running run_atlas (--nthreads 6)
[2025-12-01 22:13:21] Arguments: --nthreads 6
[2025-12-01 22:13:21] Threads: 6
[2025-12-01 22:13:21] Checking for CVMFS
[2025-12-01 22:13:21] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-01 22:13:22] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-01 22:13:22] Running cvmfs_config stat atlas.cern.ch
[2025-12-01 22:13:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-01 22:13:23] 2.11.5.0 8833 13 49716 153531 2 110 3641611 4194304 2369 130560 0 189555 99.990 3565 953 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.3.250:3128 1
[2025-12-01 22:13:23] CVMFS is ok
[2025-12-01 22:13:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-01 22:13:23] Checking for apptainer binary...
[2025-12-01 22:13:23] apptainer is not installed, using version from CVMFS
[2025-12-01 22:13:23] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-01 22:13:26] boinc-b450f
[2025-12-01 22:13:26] apptainer works
[2025-12-01 22:13:26] Set ATHENA_PROC_NUMBER=6
[2025-12-01 22:13:26] Set ATHENA_CORE_NUMBER=6
[2025-12-01 22:13:26] Starting ATLAS job with PandaID=6905245713
[2025-12-01 22:13:26] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-02 08:40:01]  *** The last 200 lines of the pilot log: ***
[2025-12-02 08:40:01] 2025-12-02 07:39:13,313 | INFO     | time since job start (37525s) is within the limit (172800.0s)
[2025-12-02 08:40:01] 2025-12-02 07:39:15,113 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-02 08:40:01] 2025-12-02 07:39:15,116 | INFO     | found 12 cores (12 cores per socket, 1 socket) HT, CPU MHz: 3819.6137500000004
[2025-12-02 08:40:01] 2025-12-02 07:39:15,118 | INFO     | using path: /var/lib/boinc-client/slots/0/PanDA_Pilot-6905245713/memory_monitor_summary.json (trf name=prmon)
[2025-12-02 08:40:01] 2025-12-02 07:39:15,119 | INFO     | extracted standard info from prmon json
[2025-12-02 08:40:01] 2025-12-02 07:39:15,119 | INFO     | extracted standard memory fields from prmon json
[2025-12-02 08:40:01] 2025-12-02 07:39:15,119 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-02 08:40:01] 2025-12-02 07:39:15,126 | INFO     | fitting pss+swap vs Time
[2025-12-02 08:40:01] 2025-12-02 07:39:15,126 | INFO     | sum of square deviations: 72127789580.0
[2025-12-02 08:40:01] 2025-12-02 07:39:15,133 | INFO     | sum of deviations: 586194416513.0001
[2025-12-02 08:40:01] 2025-12-02 07:39:15,134 | INFO     | mean x: 1764642387.0
[2025-12-02 08:40:01] 2025-12-02 07:39:15,134 | INFO     | mean y: 3032402.5398373986
[2025-12-02 08:40:01] 2025-12-02 07:39:15,134 | INFO     | intersect: -14338506696.675863
[2025-12-02 08:40:01] 2025-12-02 07:39:15,134 | INFO     | chi2: 4.556033691565264
[2025-12-02 08:40:01] 2025-12-02 07:39:15,135 | INFO     | sum of square deviations: 70382835932.5
[2025-12-02 08:40:01] 2025-12-02 07:39:15,142 | INFO     | sum of deviations: 740511931917.5
[2025-12-02 08:40:01] 2025-12-02 07:39:15,142 | INFO     | mean x: 1764642234.5
[2025-12-02 08:40:01] 2025-12-02 07:39:15,142 | INFO     | mean y: 3045861.319672131
[2025-12-02 08:40:01] 2025-12-02 07:39:15,142 | INFO     | intersect: -18563108981.68814
[2025-12-02 08:40:01] 2025-12-02 07:39:15,142 | INFO     | chi2: 2.556833155491196
[2025-12-02 08:40:01] 2025-12-02 07:39:15,142 | INFO     | current chi2=2.556833155491196 (change=43.88028428708186 %)
[2025-12-02 08:40:01] 2025-12-02 07:39:15,143 | INFO     | sum of square deviations: 68666254910.0
[2025-12-02 08:40:01] 2025-12-02 07:39:15,150 | INFO     | sum of deviations: 735516945545.0001
[2025-12-02 08:40:01] 2025-12-02 07:39:15,150 | INFO     | mean x: 1764642082.0
[2025-12-02 08:40:01] 2025-12-02 07:39:15,150 | INFO     | mean y: 3045412.894214876
[2025-12-02 08:40:01] 2025-12-02 07:39:15,150 | INFO     | intersect: -18898876001.54702
[2025-12-02 08:40:01] 2025-12-02 07:39:15,150 | INFO     | chi2: 2.5360630192126354
[2025-12-02 08:40:01] 2025-12-02 07:39:15,151 | INFO     | current chi2=2.5360630192126354 (change=0.8123383504298481 %)
[2025-12-02 08:40:01] 2025-12-02 07:39:15,151 | INFO     | right removable region: 604
[2025-12-02 08:40:01] 2025-12-02 07:39:15,151 | INFO     | sum of square deviations: 70382835932.5
[2025-12-02 08:40:01] 2025-12-02 07:39:15,158 | INFO     | sum of deviations: 403761241872.00006
[2025-12-02 08:40:01] 2025-12-02 07:39:15,158 | INFO     | mean x: 1764642539.5
[2025-12-02 08:40:01] 2025-12-02 07:39:15,158 | INFO     | mean y: 3048314.432786885
[2025-12-02 08:40:01] 2025-12-02 07:39:15,158 | INFO     | intersect: -10120076930.079823
[2025-12-02 08:40:01] 2025-12-02 07:39:15,159 | INFO     | chi2: 2.14870924005145
[2025-12-02 08:40:01] 2025-12-02 07:39:15,159 | INFO     | current chi2=2.14870924005145 (change=52.83816175395221 %)
[2025-12-02 08:40:01] 2025-12-02 07:39:15,159 | INFO     | sum of square deviations: 68666254910.0
[2025-12-02 08:40:01] 2025-12-02 07:39:15,165 | INFO     | sum of deviations: 367579573406.00006
[2025-12-02 08:40:01] 2025-12-02 07:39:15,165 | INFO     | mean x: 1764642692.0
[2025-12-02 08:40:01] 2025-12-02 07:39:15,165 | INFO     | mean y: 3051526.7123966943
[2025-12-02 08:40:01] 2025-12-02 07:39:15,166 | INFO     | intersect: -9443314942.37127
[2025-12-02 08:40:01] 2025-12-02 07:39:15,166 | INFO     | chi2: 2.105659626767794
[2025-12-02 08:40:01] 2025-12-02 07:39:15,166 | INFO     | current chi2=2.105659626767794 (change=2.003510409003751 %)
[2025-12-02 08:40:01] 2025-12-02 07:39:15,166 | INFO     | left removable region: 20
[2025-12-02 08:40:01] 2025-12-02 07:39:15,167 | INFO     | sum of square deviations: 61761195210.0
[2025-12-02 08:40:01] 2025-12-02 07:39:15,173 | INFO     | sum of deviations: 466603943017.5001
[2025-12-02 08:40:01] 2025-12-02 07:39:15,173 | INFO     | mean x: 1764642661.5
[2025-12-02 08:40:01] 2025-12-02 07:39:15,173 | INFO     | mean y: 3069534.9640410957
[2025-12-02 08:40:01] 2025-12-02 07:39:15,173 | INFO     | intersect: -13328751863.134123
[2025-12-02 08:40:01] 2025-12-02 07:39:15,173 | INFO     | chi2: 0.04436139564750787
[2025-12-02 08:40:01] 2025-12-02 07:39:15,174 | INFO     | current memory leak: 7.55 B/s (using 584 data points, chi2=0.04)
[2025-12-02 08:40:01] 2025-12-02 07:39:15,174 | INFO     | could have reported an average CPU frequency of 3848 MHz (23 samples)
[2025-12-02 08:40:01] 2025-12-02 07:39:15,174 | INFO     | ..............................
[2025-12-02 08:40:01] 2025-12-02 07:39:15,174 | INFO     | . Timing measurements:
[2025-12-02 08:40:01] 2025-12-02 07:39:15,174 | INFO     | . get job = 0 s
[2025-12-02 08:40:01] 2025-12-02 07:39:15,174 | INFO     | . initial setup = 2 s
[2025-12-02 08:40:01] 2025-12-02 07:39:15,174 | INFO     | . payload setup = 9 s
[2025-12-02 08:40:01] 2025-12-02 07:39:15,174 | INFO     | . stage-in = 0 s
[2025-12-02 08:40:01] 2025-12-02 07:39:15,174 | INFO     | . payload execution = 37490 s
[2025-12-02 08:40:01] 2025-12-02 07:39:15,175 | INFO     | . stage-out = 3 s
[2025-12-02 08:40:01] 2025-12-02 07:39:15,175 | INFO     | . log creation = 0 s
[2025-12-02 08:40:01] 2025-12-02 07:39:15,175 | INFO     | ..............................
[2025-12-02 08:40:01] 2025-12-02 07:39:15,315 | INFO     | time since job start (37527s) is within the limit (172800.0s)
[2025-12-02 08:40:01] 2025-12-02 07:39:15,370 | INFO     | 
[2025-12-02 08:40:01] 2025-12-02 07:39:15,370 | INFO     | job summary report
[2025-12-02 08:40:01] 2025-12-02 07:39:15,370 | INFO     | --------------------------------------------------
[2025-12-02 08:40:01] 2025-12-02 07:39:15,370 | INFO     | PanDA job id: 6905245713
[2025-12-02 08:40:01] 2025-12-02 07:39:15,370 | INFO     | task id: 47530725
[2025-12-02 08:40:01] 2025-12-02 07:39:15,370 | INFO     | errors: (none)
[2025-12-02 08:40:01] 2025-12-02 07:39:15,370 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-02 08:40:01] 2025-12-02 07:39:15,370 | INFO     | pilot state: finished 
[2025-12-02 08:40:01] 2025-12-02 07:39:15,370 | INFO     | transexitcode: 0
[2025-12-02 08:40:01] 2025-12-02 07:39:15,371 | INFO     | exeerrorcode: 0
[2025-12-02 08:40:01] 2025-12-02 07:39:15,371 | INFO     | exeerrordiag: 
[2025-12-02 08:40:01] 2025-12-02 07:39:15,371 | INFO     | exitcode: 0
[2025-12-02 08:40:01] 2025-12-02 07:39:15,371 | INFO     | exitmsg: OK
[2025-12-02 08:40:01] 2025-12-02 07:39:15,371 | INFO     | cpuconsumptiontime: 145418 s
[2025-12-02 08:40:01] 2025-12-02 07:39:15,371 | INFO     | nevents: 1000
[2025-12-02 08:40:01] 2025-12-02 07:39:15,371 | INFO     | neventsw: 0
[2025-12-02 08:40:01] 2025-12-02 07:39:15,371 | INFO     | pid: 102692
[2025-12-02 08:40:01] 2025-12-02 07:39:15,371 | INFO     | pgrp: 102692
[2025-12-02 08:40:01] 2025-12-02 07:39:15,371 | INFO     | corecount: 6
[2025-12-02 08:40:01] 2025-12-02 07:39:15,371 | INFO     | event service: False
[2025-12-02 08:40:01] 2025-12-02 07:39:15,371 | INFO     | sizes: {0: 2284406, 5: 2284668, 11: 2284724, 37504: 2345093, 37505: 2345092, 37508: 2354340, 37513: 2354530}
[2025-12-02 08:40:01] 2025-12-02 07:39:15,371 | INFO     | --------------------------------------------------
[2025-12-02 08:40:01] 2025-12-02 07:39:15,371 | INFO     | 
[2025-12-02 08:40:01] 2025-12-02 07:39:15,371 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/0
[2025-12-02 08:40:01] 2025-12-02 07:39:15,437 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-02 08:40:01] 2025-12-02 07:39:15,437 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-02 08:40:01] 2025-12-02 07:39:15,437 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-02 08:40:01] 2025-12-02 07:39:15,437 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-02 08:40:01] 2025-12-02 07:39:15,437 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-02 08:40:01] 2025-12-02 07:39:15,437 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-02 08:40:01] 2025-12-02 07:39:15,437 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-02 08:40:01] 2025-12-02 07:39:15,437 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-02 08:40:01] 2025-12-02 07:39:15,437 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-02 08:40:01] 2025-12-02 07:39:15,437 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-02 08:40:01] 2025-12-02 07:39:15,437 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-02 08:40:01] 2025-12-02 07:39:15,437 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-02 08:40:01] 2025-12-02 07:39:15,438 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-02 08:40:01] 2025-12-02 07:39:15,438 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-02 08:40:01] 2025-12-02 07:39:15,438 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-02 08:40:01] 2025-12-02 07:39:15,438 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-02 08:40:01] 2025-12-02 07:39:15,438 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-02 08:40:01] 2025-12-02 07:39:15,438 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-02 08:40:01] 2025-12-02 07:39:15,438 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-02 08:40:01] 2025-12-02 07:39:15,438 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-02 08:40:01] 2025-12-02 07:39:15,438 | INFO     | job 6905245713 has completed (purged errors)
[2025-12-02 08:40:01] 2025-12-02 07:39:15,438 | INFO     | overall cleanup function is called
[2025-12-02 08:40:01] 2025-12-02 07:39:16,445 | INFO     | --- collectZombieJob: --- 10, [102692]
[2025-12-02 08:40:01] 2025-12-02 07:39:16,445 | INFO     | zombie collector waiting for pid 102692
[2025-12-02 08:40:01] 2025-12-02 07:39:16,445 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-02 08:40:01] 2025-12-02 07:39:16,445 | INFO     | collected zombie processes
[2025-12-02 08:40:01] 2025-12-02 07:39:16,445 | INFO     | will attempt to kill all subprocesses of pid=102692
[2025-12-02 08:40:01] 2025-12-02 07:39:16,552 | INFO     | process IDs to be killed: [102692] (in reverse order)
[2025-12-02 08:40:01] 2025-12-02 07:39:16,765 | WARNING  | found no corresponding commands to process id(s)
[2025-12-02 08:40:01] 2025-12-02 07:39:16,765 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-02 08:40:01] 2025-12-02 07:39:16,770 | INFO     | did not find any defunct processes belonging to 102692
[2025-12-02 08:40:01] 2025-12-02 07:39:16,772 | INFO     | did not find any defunct processes belonging to 102692
[2025-12-02 08:40:01] 2025-12-02 07:39:16,776 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-02 08:40:01] 2025-12-02 07:39:16,776 | INFO     | ready for new job
[2025-12-02 08:40:01] 2025-12-02 07:39:16,776 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-02 08:40:01] 2025-12-02 07:39:16,777 | INFO     | ***************************************
[2025-12-02 08:40:01] 2025-12-02 07:39:16,777 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-02 08:40:01] 2025-12-02 07:39:16,777 | INFO     | ***************************************
[2025-12-02 08:40:01] 2025-12-02 07:39:16,777 | INFO     | 
[2025-12-02 08:40:01] 2025-12-02 07:39:16,778 | INFO     | architecture information:
[2025-12-02 08:40:01] 2025-12-02 07:39:16,778 | INFO     | executing command: cat /etc/os-release
[2025-12-02 08:40:01] 2025-12-02 07:39:16,785 | INFO     | cat /etc/os-release:
[2025-12-02 08:40:01] NAME="CentOS Linux"
[2025-12-02 08:40:01] VERSION="7 (Core)"
[2025-12-02 08:40:01] ID="centos"
[2025-12-02 08:40:01] ID_LIKE="rhel fedora"
[2025-12-02 08:40:01] VERSION_ID="7"
[2025-12-02 08:40:01] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-02 08:40:01] ANSI_COLOR="0;31"
[2025-12-02 08:40:01] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-02 08:40:01] HOME_URL="https://www.centos.org/"
[2025-12-02 08:40:01] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-02 08:40:01] 
[2025-12-02 08:40:01] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-02 08:40:01] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-02 08:40:01] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-02 08:40:01] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-02 08:40:01] 
[2025-12-02 08:40:01] 2025-12-02 07:39:16,785 | INFO     | ***************************************
[2025-12-02 08:40:01] 2025-12-02 07:39:17,288 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/0
[2025-12-02 08:40:01] 2025-12-02 07:39:17,378 | INFO     | sufficient remaining disk space (14611906560 B)
[2025-12-02 08:40:01] 2025-12-02 07:39:17,378 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-02 08:40:01] 2025-12-02 07:39:17,378 | INFO     | current server update state: UPDATING_FINAL
[2025-12-02 08:40:01] 2025-12-02 07:39:17,379 | INFO     | update_server=False
[2025-12-02 08:40:01] 2025-12-02 07:39:17,379 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-02 08:40:01] 2025-12-02 07:39:17,379 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-02 08:40:01] 2025-12-02 07:39:17,379 | INFO     | aborting loop
[2025-12-02 08:40:01] 2025-12-02 07:39:17,477 | INFO     | all job control threads have been joined
[2025-12-02 08:40:01] 2025-12-02 07:39:18,219 | INFO     | all data control threads have been joined
[2025-12-02 08:40:01] 2025-12-02 07:39:18,247 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-02 08:40:01] 2025-12-02 07:39:18,384 | INFO     | [job] retrieve thread has finished
[2025-12-02 08:40:01] 2025-12-02 07:39:18,384 | INFO     | [job] job monitor thread has finished
[2025-12-02 08:40:01] 2025-12-02 07:39:18,482 | INFO     | [job] control thread has finished
[2025-12-02 08:40:01] 2025-12-02 07:39:18,789 | INFO     | all payload control threads have been joined
[2025-12-02 08:40:01] 2025-12-02 07:39:18,825 | INFO     | [job] validate thread has finished
[2025-12-02 08:40:01] 2025-12-02 07:39:18,845 | INFO     | [data] copytool_in thread has finished
[2025-12-02 08:40:01] 2025-12-02 07:39:18,905 | INFO     | [payload] failed_post thread has finished
[2025-12-02 08:40:01] 2025-12-02 07:39:18,960 | INFO     | [payload] validate_post thread has finished
[2025-12-02 08:40:01] 2025-12-02 07:39:19,142 | INFO     | [payload] execute_payloads thread has finished
[2025-12-02 08:40:01] 2025-12-02 07:39:19,224 | INFO     | [data] control thread has finished
[2025-12-02 08:40:01] 2025-12-02 07:39:19,455 | INFO     | [payload] validate_pre thread has finished
[2025-12-02 08:40:01] 2025-12-02 07:39:19,515 | INFO     | [job] create_data_payload thread has finished
[2025-12-02 08:40:01] 2025-12-02 07:39:19,794 | INFO     | [payload] control thread has finished
[2025-12-02 08:40:01] 2025-12-02 07:39:20,253 | INFO     | [data] copytool_out thread has finished
[2025-12-02 08:40:01] 2025-12-02 07:39:20,285 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-02 08:40:01] 2025-12-02 07:39:20,730 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-02 08:40:01] 2025-12-02 07:39:21,295 | INFO     | [job] queue monitor thread has finished
[2025-12-02 08:40:01] 2025-12-02 07:39:24,735 | INFO     | [data] queue_monitor thread has finished
[2025-12-02 08:40:01] 2025-12-02 07:39:28,005 | INFO     | job.realtimelogging is not enabled
[2025-12-02 08:40:01] 2025-12-02 07:39:29,010 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-02 08:40:01] 2025-12-02 07:39:48,507 | INFO     | PID=81434 has CPU usage=4.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-02 08:40:01] 2025-12-02 07:39:48,507 | INFO     | .. there are 2 such processes running
[2025-12-02 08:40:01] 2025-12-02 07:39:48,508 | INFO     | found 0 job(s) in 20 queues
[2025-12-02 08:40:01] 2025-12-02 07:39:48,508 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-02 08:40:01] 2025-12-02 07:39:48,508 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-02 08:40:01] 2025-12-02 07:39:54,445 | INFO     | [monitor] cgroup control has ended
[2025-12-02 08:40:01] 2025-12-02 07:39:55,850 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139657890252608)>', '<ExcThread(monitor, started 139657362794240)>']
[2025-12-02 08:40:01] 2025-12-02 07:39:56,544 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-02 08:40:01] 2025-12-02 07:39:56,545 | INFO     | [monitor] control thread has ended
[2025-12-02 08:40:01] 2025-12-02 07:40:00,875 | INFO     | all workflow threads have been joined
[2025-12-02 08:40:01] 2025-12-02 07:40:00,875 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-02 08:40:01] 2025-12-02 07:40:00,875 | INFO     | traces error code: 0
[2025-12-02 08:40:01] 2025-12-02 07:40:00,875 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-02 08:40:01] 2025-12-02 07:40:00,932 [wrapper] ==== pilot stdout END ====
[2025-12-02 08:40:01] 2025-12-02 07:40:00,934 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-02 08:40:01] 2025-12-02 07:40:00,935 [wrapper] pilotpid: 81434
[2025-12-02 08:40:01] 2025-12-02 07:40:00,936 [wrapper] Pilot exit status: 0
[2025-12-02 08:40:01] 2025-12-02 07:40:00,949 [wrapper] pandaids: 6905245713
[2025-12-02 08:40:01] 2025-12-02 07:40:00,966 [wrapper] cleanup supervisor_pilot  369120 81435
[2025-12-02 08:40:01] 2025-12-02 07:40:00,967 [wrapper] Test setup, not cleaning
[2025-12-02 08:40:01] 2025-12-02 07:40:00,968 [wrapper] apfmon messages muted
[2025-12-02 08:40:01] 2025-12-02 07:40:00,969 [wrapper] ==== wrapper stdout END ====
[2025-12-02 08:40:01] 2025-12-02 07:40:00,971 [wrapper] ==== wrapper stderr END ====
[2025-12-02 08:40:01]  *** Error codes and diagnostics ***
[2025-12-02 08:40:01]     "exeErrorCode": 0,
[2025-12-02 08:40:01]     "exeErrorDiag": "",
[2025-12-02 08:40:01]     "pilotErrorCode": 0,
[2025-12-02 08:40:01]     "pilotErrorDiag": "",
[2025-12-02 08:40:01]  *** Listing of results directory ***
[2025-12-02 08:40:01] total 1064426
[2025-12-02 08:40:01] -rw-r--r-- 1 boinc boinc    576529 Nov 30 01:16 pilot3.tar.gz
[2025-12-02 08:40:01] -rwx------ 1 boinc boinc     36292 Nov 30 01:18 runpilot2-wrapper.sh
[2025-12-02 08:40:01] -rw-r--r-- 1 boinc boinc      5112 Nov 30 01:18 queuedata.json
[2025-12-02 08:40:01] -rw-r--r-- 1 boinc boinc       100 Dec  1 22:13 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-02 08:40:01] -rwxr-xr-x 1 boinc boinc      7986 Dec  1 22:13 run_atlas
[2025-12-02 08:40:01] -rw-r--r-- 1 boinc boinc       105 Dec  1 22:13 job.xml
[2025-12-02 08:40:01] -rw-r--r-- 1 boinc boinc      6795 Dec  1 22:13 init_data.xml
[2025-12-02 08:40:01] -rw-r--r-- 2 boinc boinc 376880422 Dec  1 22:13 EVNT.47530720._000011.pool.root.1
[2025-12-02 08:40:01] -rw-r--r-- 2 boinc boinc     15847 Dec  1 22:13 start_atlas.sh
[2025-12-02 08:40:01] drwxrwx--x 2 boinc boinc         5 Dec  1 22:13 shared
[2025-12-02 08:40:01] -rw-r--r-- 2 boinc boinc    590132 Dec  1 22:13 input.tar.gz
[2025-12-02 08:40:01] -rw-r--r-- 1 boinc boinc         0 Dec  1 22:13 boinc_lockfile
[2025-12-02 08:40:01] -rw-r--r-- 1 boinc boinc      2878 Dec  1 22:13 pandaJob.out
[2025-12-02 08:40:01] -rw------- 1 boinc boinc        56 Dec  1 22:13 setup.sh.local
[2025-12-02 08:40:01] -rw------- 1 boinc boinc    992004 Dec  1 22:13 agis_schedconf.cvmfs.json
[2025-12-02 08:40:01] drwx------ 5 boinc boinc        22 Dec  1 22:13 pilot3
[2025-12-02 08:40:01] -rw-r--r-- 1 boinc boinc       533 Dec  2 08:33 boinc_task_state.xml
[2025-12-02 08:40:01] -rw------- 1 boinc boinc 709024974 Dec  2 08:38 HITS.47530725._001508.pool.root.1
[2025-12-02 08:40:01] -rw------- 1 boinc boinc      1040 Dec  2 08:39 memory_monitor_summary.json
[2025-12-02 08:40:01] -rw------- 1 boinc boinc   1516240 Dec  2 08:39 agis_ddmendpoints.agis.ALL.json
[2025-12-02 08:40:01] -rw------- 1 boinc boinc   1681589 Dec  2 08:39 log.47530725._001508.job.log.tgz.1
[2025-12-02 08:40:01] -rw------- 1 boinc boinc     27024 Dec  2 08:39 heartbeat.json
[2025-12-02 08:40:01] -rw------- 1 boinc boinc        95 Dec  2 08:39 pilot_heartbeat.json
[2025-12-02 08:40:01] -rw-r--r-- 1 boinc boinc      8192 Dec  2 08:39 boinc_mmap_file
[2025-12-02 08:40:01] -rw-r--r-- 1 boinc boinc        29 Dec  2 08:39 wrapper_checkpoint.txt
[2025-12-02 08:40:01] -rw------- 1 boinc boinc      4900 Dec  2 08:40 pilotlog.txt
[2025-12-02 08:40:01] -rw------- 1 boinc boinc   5225730 Dec  2 08:40 log.47530725._001508.job.log.1
[2025-12-02 08:40:01] -rw------- 1 boinc boinc       353 Dec  2 08:40 output.list
[2025-12-02 08:40:01] -rw-r--r-- 1 boinc boinc       620 Dec  2 08:40 runtime_log
[2025-12-02 08:40:01] -rw------- 1 boinc boinc   6942720 Dec  2 08:40 result.tar.gz
[2025-12-02 08:40:01] -rw-r--r-- 1 boinc boinc      9465 Dec  2 08:40 runtime_log.err
[2025-12-02 08:40:01] -rw------- 1 boinc boinc       668 Dec  2 08:40 GJqNDmmJkj8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm9yLKDmQrSSjm.diag
[2025-12-02 08:40:01] -rw-r--r-- 1 boinc boinc      1835 Dec  2 08:40 stderr.txt
[2025-12-02 08:40:01] HITS file was successfully produced:
[2025-12-02 08:40:01] -rw------- 1 boinc boinc 709024974 Dec  2 08:38 shared/HITS.pool.root.1
[2025-12-02 08:40:01]  *** Contents of shared directory: ***
[2025-12-02 08:40:01] total 1061678
[2025-12-02 08:40:01] -rw-r--r-- 2 boinc boinc 376880422 Dec  1 22:13 ATLAS.root_0
[2025-12-02 08:40:01] -rw-r--r-- 2 boinc boinc     15847 Dec  1 22:13 start_atlas.sh
[2025-12-02 08:40:01] -rw-r--r-- 2 boinc boinc    590132 Dec  1 22:13 input.tar.gz
[2025-12-02 08:40:01] -rw------- 1 boinc boinc 709024974 Dec  2 08:38 HITS.pool.root.1
[2025-12-02 08:40:01] -rw------- 1 boinc boinc   6942720 Dec  2 08:40 result.tar.gz
08:40:02 (69041): run_atlas exited; CPU time 145811.940944
08:40:02 (69041): called boinc_finish(0)

</stderr_txt>
]]>

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