Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
22:09:52 (1509316): wrapper (7.7.26015): starting
22:09:52 (1509316): wrapper: running run_atlas (--nthreads 3)
[2025-12-02 22:09:52] Arguments: --nthreads 3
[2025-12-02 22:09:52] Threads: 3
[2025-12-02 22:09:52] Checking for CVMFS
[2025-12-02 22:09:52] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-02 22:09:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-02 22:09:52] Running cvmfs_config stat atlas.cern.ch
[2025-12-02 22:09:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-02 22:09:53] 2.9.2.0 2923852 20575 100268 153568 2 68 19533430 36864000 0 130560 1 7727989 99.956 905967 819 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-12-02 22:09:53] CVMFS is ok
[2025-12-02 22:09:53] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-02 22:09:53] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-02 22:09:53] Further information can be found at the LHC@home message board.
[2025-12-02 22:09:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-02 22:09:53] Checking for apptainer binary...
[2025-12-02 22:09:53] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-02 22:09:53] Running /usr/bin/apptainer --version
[2025-12-02 22:09:53] apptainer version 1.4.1-1.1
[2025-12-02 22:09:53] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-02 22:09:53] magicA161a
[2025-12-02 22:09:53] apptainer works
[2025-12-02 22:09:53] Set ATHENA_PROC_NUMBER=3
[2025-12-02 22:09:53] Set ATHENA_CORE_NUMBER=3
[2025-12-02 22:09:53] Starting ATLAS job with PandaID=6900219080
[2025-12-02 22:09:53] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-03 06:02:37]  *** The last 200 lines of the pilot log: ***
[2025-12-03 06:02:37] 2025-12-03 05:01:53,708 | INFO     | all job control threads have been joined
[2025-12-03 06:02:37] 2025-12-03 05:01:53,746 | INFO     | all payload control threads have been joined
[2025-12-03 06:02:37] 2025-12-03 05:01:54,225 | INFO     | [job] queue monitor thread has finished
[2025-12-03 06:02:37] 2025-12-03 05:01:54,226 | INFO     | [job] job monitor thread has finished
[2025-12-03 06:02:37] 2025-12-03 05:01:54,226 | INFO     | [job] retrieve thread has finished
[2025-12-03 06:02:37] 2025-12-03 05:01:54,559 | INFO     | [data] copytool_in thread has finished
[2025-12-03 06:02:37] 2025-12-03 05:01:54,594 | INFO     | [data] control thread has finished
[2025-12-03 06:02:37] 2025-12-03 05:01:54,714 | INFO     | [job] control thread has finished
[2025-12-03 06:02:37] 2025-12-03 05:01:54,751 | INFO     | [payload] control thread has finished
[2025-12-03 06:02:37] 2025-12-03 05:01:54,989 | INFO     | [job] create_data_payload thread has finished
[2025-12-03 06:02:37] 2025-12-03 05:01:55,025 | INFO     | [payload] execute_payloads thread has finished
[2025-12-03 06:02:37] 2025-12-03 05:01:55,026 | INFO     | [job] validate thread has finished
[2025-12-03 06:02:37] 2025-12-03 05:01:55,136 | INFO     | [payload] validate_pre thread has finished
[2025-12-03 06:02:37] 2025-12-03 05:01:55,292 | INFO     | [payload] failed_post thread has finished
[2025-12-03 06:02:37] 2025-12-03 05:01:55,385 | INFO     | [data] copytool_out thread has finished
[2025-12-03 06:02:37] 2025-12-03 05:01:55,771 | INFO     | [payload] validate_post thread has finished
[2025-12-03 06:02:37] 2025-12-03 05:01:55,972 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-03 06:02:37] 2025-12-03 05:01:59,979 | INFO     | [data] queue_monitor thread has finished
[2025-12-03 06:02:37] 2025-12-03 05:02:03,737 | INFO     | job.realtimelogging is not enabled
[2025-12-03 06:02:37] 2025-12-03 05:02:04,743 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-03 06:02:37] 2025-12-03 05:02:23,731 | INFO     | PID=1513037 has CPU usage=2.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-03 06:02:37] 2025-12-03 05:02:23,732 | INFO     | found 0 job(s) in 20 queues
[2025-12-03 06:02:37] 2025-12-03 05:02:23,732 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-03 06:02:37] 2025-12-03 05:02:23,732 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-03 06:02:37] 2025-12-03 05:02:30,660 | INFO     | [monitor] cgroup control has ended
[2025-12-03 06:02:37] 2025-12-03 05:02:32,400 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139917244675904)>', '<ExcThread(monitor, started 139916971316992)>']
[2025-12-03 06:02:37] 2025-12-03 05:02:32,775 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-03 06:02:37] 2025-12-03 05:02:32,775 | INFO     | [monitor] control thread has ended
[2025-12-03 06:02:37] 2025-12-03 05:02:37,426 | INFO     | all workflow threads have been joined
[2025-12-03 06:02:37] 2025-12-03 05:02:37,426 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-03 06:02:37] 2025-12-03 05:02:37,426 | INFO     | traces error code: 0
[2025-12-03 06:02:37] 2025-12-03 05:02:37,427 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-03 06:02:37] 2025-12-03 05:02:37,475 [wrapper] ==== pilot stdout END ====
[2025-12-03 06:02:37] 2025-12-03 05:02:37,478 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-03 06:02:37] 2025-12-03 05:02:37,480 [wrapper] pilotpid: 1513037
[2025-12-03 06:02:37] 2025-12-03 05:02:37,483 [wrapper] Pilot exit status: 0
[2025-12-03 06:02:37] 2025-12-03 05:02:37,490 [wrapper] pandaids: 6900219080
[2025-12-03 06:02:37] 2025-12-03 05:02:37,508 [wrapper] cleanup supervisor_pilot 1569520 1513038
[2025-12-03 06:02:37] 2025-12-03 05:02:37,510 [wrapper] Test setup, not cleaning
[2025-12-03 06:02:37] 2025-12-03 05:02:37,513 [wrapper] apfmon messages muted
[2025-12-03 06:02:37] 2025-12-03 05:02:37,515 [wrapper] ==== wrapper stdout END ====
[2025-12-03 06:02:37] 2025-12-03 05:02:37,517 [wrapper] ==== wrapper stderr END ====
[2025-12-03 06:02:37]  *** Error codes and diagnostics ***
[2025-12-03 06:02:37]     "exeErrorCode": 0,
[2025-12-03 06:02:37]     "exeErrorDiag": "",
[2025-12-03 06:02:37]     "pilotErrorCode": 0,
[2025-12-03 06:02:37]     "pilotErrorDiag": "",
[2025-12-03 06:02:37]  *** Listing of results directory ***
[2025-12-03 06:02:37] total 1315544
[2025-12-03 06:02:37] -rw-r--r-- 1 boinc boinc    576529 Nov 27 17:16 pilot3.tar.gz
[2025-12-03 06:02:37] -rwx------ 1 boinc boinc     36292 Nov 27 17:17 runpilot2-wrapper.sh
[2025-12-03 06:02:37] -rw-r--r-- 1 boinc boinc      5112 Nov 27 17:18 queuedata.json
[2025-12-03 06:02:37] -rw-r--r-- 1 boinc boinc       100 Dec  2 22:09 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-03 06:02:37] -rwxr-xr-x 1 boinc boinc      7986 Dec  2 22:09 run_atlas
[2025-12-03 06:02:37] -rw-r--r-- 1 boinc boinc       105 Dec  2 22:09 job.xml
[2025-12-03 06:02:37] -rw-r--r-- 2 boinc boinc 408025517 Dec  2 22:09 EVNT.47483658._004354.pool.root.1
[2025-12-03 06:02:37] -rw-r--r-- 2 boinc boinc    590105 Dec  2 22:09 input.tar.gz
[2025-12-03 06:02:37] -rw-r--r-- 2 boinc boinc     15847 Dec  2 22:09 start_atlas.sh
[2025-12-03 06:02:37] drwxrwx--x 2 boinc boinc      4096 Dec  2 22:09 shared
[2025-12-03 06:02:37] -rw-r--r-- 1 boinc boinc         0 Dec  2 22:09 boinc_setup_complete
[2025-12-03 06:02:37] -rw-r--r-- 1 boinc boinc      6449 Dec  2 22:09 init_data.xml
[2025-12-03 06:02:37] -rw-r--r-- 1 boinc boinc         0 Dec  2 22:09 boinc_lockfile
[2025-12-03 06:02:37] -rw-r--r-- 1 boinc boinc      2787 Dec  2 22:09 pandaJob.out
[2025-12-03 06:02:37] -rw------- 1 boinc boinc    989224 Dec  2 22:09 agis_schedconf.cvmfs.json
[2025-12-03 06:02:37] drwx------ 5 boinc boinc      4096 Dec  2 22:09 pilot3
[2025-12-03 06:02:37] -rw-r--r-- 1 boinc boinc       532 Dec  3 05:58 boinc_task_state.xml
[2025-12-03 06:02:37] -rw------- 1 boinc boinc 924888274 Dec  3 06:01 HITS.47556185._001176.pool.root.1
[2025-12-03 06:02:37] -rw------- 1 boinc boinc      1021 Dec  3 06:01 memory_monitor_summary.json
[2025-12-03 06:02:37] -rw------- 1 boinc boinc   1516240 Dec  3 06:01 agis_ddmendpoints.agis.ALL.json
[2025-12-03 06:02:37] -rw------- 1 boinc boinc   1167236 Dec  3 06:01 log.47556185._001176.job.log.tgz.1
[2025-12-03 06:02:37] -rw------- 1 boinc boinc      8577 Dec  3 06:01 heartbeat.json
[2025-12-03 06:02:37] -rw------- 1 boinc boinc        95 Dec  3 06:02 pilot_heartbeat.json
[2025-12-03 06:02:37] -rw-r--r-- 1 boinc boinc      8192 Dec  3 06:02 boinc_mmap_file
[2025-12-03 06:02:37] -rw-r--r-- 1 boinc boinc        28 Dec  3 06:02 wrapper_checkpoint.txt
[2025-12-03 06:02:37] -rw------- 1 boinc boinc      4824 Dec  3 06:02 pilotlog.txt
[2025-12-03 06:02:37] -rw------- 1 boinc boinc   3985538 Dec  3 06:02 log.47556185._001176.job.log.1
[2025-12-03 06:02:37] -rw------- 1 boinc boinc       353 Dec  3 06:02 output.list
[2025-12-03 06:02:37] -rw-r--r-- 1 boinc boinc       620 Dec  3 06:02 runtime_log
[2025-12-03 06:02:37] -rw------- 1 boinc boinc   5171200 Dec  3 06:02 result.tar.gz
[2025-12-03 06:02:37] -rw------- 1 boinc boinc       669 Dec  3 06:02 vt4NDmQrti8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmQwNKDmjFv4im.diag
[2025-12-03 06:02:37] -rw-r--r-- 1 boinc boinc      8918 Dec  3 06:02 runtime_log.err
[2025-12-03 06:02:37] -rw-r--r-- 1 boinc boinc      6735 Dec  3 06:02 stderr.txt
[2025-12-03 06:02:37] HITS file was successfully produced:
[2025-12-03 06:02:37] -rw------- 1 boinc boinc 924888274 Dec  3 06:01 shared/HITS.pool.root.1
[2025-12-03 06:02:37]  *** Contents of shared directory: ***
[2025-12-03 06:02:37] total 1307332
[2025-12-03 06:02:37] -rw-r--r-- 2 boinc boinc 408025517 Dec  2 22:09 ATLAS.root_0
[2025-12-03 06:02:37] -rw-r--r-- 2 boinc boinc    590105 Dec  2 22:09 input.tar.gz
[2025-12-03 06:02:37] -rw-r--r-- 2 boinc boinc     15847 Dec  2 22:09 start_atlas.sh
[2025-12-03 06:02:37] -rw------- 1 boinc boinc 924888274 Dec  3 06:01 HITS.pool.root.1
[2025-12-03 06:02:37] -rw------- 1 boinc boinc   5171200 Dec  3 06:02 result.tar.gz
06:02:38 (1509316): run_atlas exited; CPU time 83615.950420
06:02:38 (1509316): called boinc_finish(0)

</stderr_txt>
]]>

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