Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
07:33:26 (1385542): wrapper (7.7.26015): starting
07:33:26 (1385542): wrapper: running run_atlas (--nthreads 3)
[2025-12-02 07:33:26] Arguments: --nthreads 3
[2025-12-02 07:33:26] Threads: 3
[2025-12-02 07:33:26] Checking for CVMFS
[2025-12-02 07:33:26] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-02 07:33:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-02 07:33:26] Running cvmfs_config stat atlas.cern.ch
[2025-12-02 07:33:27] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-02 07:33:27] 2.9.2.0 2923852 19699 100564 153546 1 81 19397904 36864001 0 130560 1 7389652 99.954 883947 800 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-12-02 07:33:27] CVMFS is ok
[2025-12-02 07:33:27] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-02 07:33:27] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-02 07:33:27] Further information can be found at the LHC@home message board.
[2025-12-02 07:33:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-02 07:33:27] Checking for apptainer binary...
[2025-12-02 07:33:27] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-02 07:33:27] Running /usr/bin/apptainer --version
[2025-12-02 07:33:27] apptainer version 1.4.1-1.1
[2025-12-02 07:33:27] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-02 07:33:27] magicA161a
[2025-12-02 07:33:27] apptainer works
[2025-12-02 07:33:27] Set ATHENA_PROC_NUMBER=3
[2025-12-02 07:33:27] Set ATHENA_CORE_NUMBER=3
[2025-12-02 07:33:27] Starting ATLAS job with PandaID=6900798773
[2025-12-02 07:33:27] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-02 15:24:12]  *** The last 200 lines of the pilot log: ***
[2025-12-02 15:24:12] 2025-12-02 14:23:40,332 | INFO     | PID=1389266 has CPU usage=4.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-02 15:24:12] 2025-12-02 14:23:40,436 | INFO     | --- collectZombieJob: --- 10, [1395719]
[2025-12-02 15:24:12] 2025-12-02 14:23:40,436 | INFO     | zombie collector waiting for pid 1395719
[2025-12-02 15:24:12] 2025-12-02 14:23:40,436 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-02 15:24:12] 2025-12-02 14:23:40,436 | INFO     | collected zombie processes
[2025-12-02 15:24:12] 2025-12-02 14:23:40,436 | INFO     | will attempt to kill all subprocesses of pid=1395719
[2025-12-02 15:24:12] 2025-12-02 14:23:40,478 | INFO     | process IDs to be killed: [1395719] (in reverse order)
[2025-12-02 15:24:12] 2025-12-02 14:23:40,502 | WARNING  | found no corresponding commands to process id(s)
[2025-12-02 15:24:12] 2025-12-02 14:23:40,502 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-02 15:24:12] 2025-12-02 14:23:40,503 | INFO     | did not find any defunct processes belonging to 1395719
[2025-12-02 15:24:12] 2025-12-02 14:23:40,504 | INFO     | did not find any defunct processes belonging to 1395719
[2025-12-02 15:24:12] 2025-12-02 14:23:40,505 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-02 15:24:12] 2025-12-02 14:23:40,505 | INFO     | ready for new job
[2025-12-02 15:24:12] 2025-12-02 14:23:40,505 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-02 15:24:12] 2025-12-02 14:23:40,506 | INFO     | ***************************************
[2025-12-02 15:24:12] 2025-12-02 14:23:40,506 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-02 15:24:12] 2025-12-02 14:23:40,506 | INFO     | ***************************************
[2025-12-02 15:24:12] 2025-12-02 14:23:40,506 | INFO     | 
[2025-12-02 15:24:12] 2025-12-02 14:23:40,506 | INFO     | architecture information:
[2025-12-02 15:24:12] 2025-12-02 14:23:40,507 | INFO     | executing command: cat /etc/os-release
[2025-12-02 15:24:12] 2025-12-02 14:23:40,515 | INFO     | cat /etc/os-release:
[2025-12-02 15:24:12] NAME="CentOS Linux"
[2025-12-02 15:24:12] VERSION="7 (Core)"
[2025-12-02 15:24:12] ID="centos"
[2025-12-02 15:24:12] ID_LIKE="rhel fedora"
[2025-12-02 15:24:12] VERSION_ID="7"
[2025-12-02 15:24:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-02 15:24:12] ANSI_COLOR="0;31"
[2025-12-02 15:24:12] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-02 15:24:12] HOME_URL="https://www.centos.org/"
[2025-12-02 15:24:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-02 15:24:12] 
[2025-12-02 15:24:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-02 15:24:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-02 15:24:12] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-02 15:24:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-02 15:24:12] 
[2025-12-02 15:24:12] 2025-12-02 14:23:40,515 | INFO     | ***************************************
[2025-12-02 15:24:12] 2025-12-02 14:23:41,018 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-12-02 15:24:12] 2025-12-02 14:23:41,030 | INFO     | sufficient remaining disk space (382520524800 B)
[2025-12-02 15:24:12] 2025-12-02 14:23:41,031 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-02 15:24:12] 2025-12-02 14:23:41,031 | INFO     | current server update state: UPDATING_FINAL
[2025-12-02 15:24:12] 2025-12-02 14:23:41,031 | INFO     | update_server=False
[2025-12-02 15:24:12] 2025-12-02 14:23:41,031 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-02 15:24:12] 2025-12-02 14:23:41,031 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-12-02 15:24:12] 2025-12-02 14:23:41,031 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-02 15:24:12] 2025-12-02 14:23:41,031 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-02 15:24:12] 2025-12-02 14:23:41,031 | INFO     | found 0 job(s) in 20 queues
[2025-12-02 15:24:12] 2025-12-02 14:23:41,031 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-02 15:24:12] 2025-12-02 14:23:41,032 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-02 15:24:12] 2025-12-02 14:23:41,146 | WARNING  | process 1395719 can no longer be monitored (due to stat problems) - aborting
[2025-12-02 15:24:12] 2025-12-02 14:23:41,174 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2025-12-02 15:24:12] 2025-12-02 14:23:41,212 | INFO     | number of running child processes to parent process 1395719: 1
[2025-12-02 15:24:12] 2025-12-02 14:23:41,212 | INFO     | maximum number of monitored processes: 8
[2025-12-02 15:24:12] 2025-12-02 14:23:41,212 | INFO     | aborting job monitoring since job object (job id=6900798773) has expired
[2025-12-02 15:24:12] 2025-12-02 14:23:41,212 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-02 15:24:12] 2025-12-02 14:23:41,212 | INFO     | will abort loop
[2025-12-02 15:24:12] 2025-12-02 14:23:41,347 | INFO     | all job control threads have been joined
[2025-12-02 15:24:12] 2025-12-02 14:23:41,661 | INFO     | all data control threads have been joined
[2025-12-02 15:24:12] 2025-12-02 14:23:42,036 | INFO     | [job] retrieve thread has finished
[2025-12-02 15:24:12] 2025-12-02 14:23:42,037 | INFO     | [job] queue monitor thread has finished
[2025-12-02 15:24:12] 2025-12-02 14:23:42,050 | INFO     | all payload control threads have been joined
[2025-12-02 15:24:12] 2025-12-02 14:23:42,178 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-02 15:24:12] 2025-12-02 14:23:42,218 | INFO     | [job] job monitor thread has finished
[2025-12-02 15:24:12] 2025-12-02 14:23:42,273 | INFO     | [data] copytool_in thread has finished
[2025-12-02 15:24:12] 2025-12-02 14:23:42,352 | INFO     | [job] control thread has finished
[2025-12-02 15:24:12] 2025-12-02 14:23:42,516 | INFO     | [payload] failed_post thread has finished
[2025-12-02 15:24:12] 2025-12-02 14:23:42,666 | INFO     | [data] control thread has finished
[2025-12-02 15:24:12] 2025-12-02 14:23:42,931 | INFO     | [job] create_data_payload thread has finished
[2025-12-02 15:24:12] 2025-12-02 14:23:42,948 | INFO     | [job] validate thread has finished
[2025-12-02 15:24:12] 2025-12-02 14:23:43,004 | INFO     | [payload] validate_pre thread has finished
[2025-12-02 15:24:12] 2025-12-02 14:23:43,014 | INFO     | [payload] execute_payloads thread has finished
[2025-12-02 15:24:12] 2025-12-02 14:23:43,036 | INFO     | [data] copytool_out thread has finished
[2025-12-02 15:24:12] 2025-12-02 14:23:43,056 | INFO     | [payload] control thread has finished
[2025-12-02 15:24:12] 2025-12-02 14:23:43,545 | INFO     | [payload] validate_post thread has finished
[2025-12-02 15:24:12] 2025-12-02 14:23:46,186 | INFO     | [data] queue_monitor thread has finished
[2025-12-02 15:24:12] 2025-12-02 14:23:51,369 | INFO     | job.realtimelogging is not enabled
[2025-12-02 15:24:12] 2025-12-02 14:23:52,374 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-02 15:24:12] 2025-12-02 14:24:05,756 | INFO     | [monitor] cgroup control has ended
[2025-12-02 15:24:12] 2025-12-02 14:24:07,840 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140113356678976)>', '<ExcThread(monitor, started 140113006802688)>']
[2025-12-02 15:24:12] 2025-12-02 14:24:08,174 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-02 15:24:12] 2025-12-02 14:24:08,174 | INFO     | [monitor] control thread has ended
[2025-12-02 15:24:12] 2025-12-02 14:24:12,852 | INFO     | all workflow threads have been joined
[2025-12-02 15:24:12] 2025-12-02 14:24:12,852 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-02 15:24:12] 2025-12-02 14:24:12,852 | INFO     | traces error code: 0
[2025-12-02 15:24:12] 2025-12-02 14:24:12,852 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-02 15:24:12] 2025-12-02 14:24:12,902 [wrapper] ==== pilot stdout END ====
[2025-12-02 15:24:12] 2025-12-02 14:24:12,905 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-02 15:24:12] 2025-12-02 14:24:12,907 [wrapper] pilotpid: 1389266
[2025-12-02 15:24:12] 2025-12-02 14:24:12,909 [wrapper] Pilot exit status: 0
[2025-12-02 15:24:12] 2025-12-02 14:24:12,917 [wrapper] pandaids: 6900798773
[2025-12-02 15:24:12] 2025-12-02 14:24:12,932 [wrapper] cleanup supervisor_pilot 1445569 1389267
[2025-12-02 15:24:12] 2025-12-02 14:24:12,935 [wrapper] Test setup, not cleaning
[2025-12-02 15:24:12] 2025-12-02 14:24:12,937 [wrapper] apfmon messages muted
[2025-12-02 15:24:12] 2025-12-02 14:24:12,939 [wrapper] ==== wrapper stdout END ====
[2025-12-02 15:24:12] 2025-12-02 14:24:12,941 [wrapper] ==== wrapper stderr END ====
[2025-12-02 15:24:12]  *** Error codes and diagnostics ***
[2025-12-02 15:24:12]     "exeErrorCode": 0,
[2025-12-02 15:24:12]     "exeErrorDiag": "",
[2025-12-02 15:24:12]     "pilotErrorCode": 0,
[2025-12-02 15:24:12]     "pilotErrorDiag": "",
[2025-12-02 15:24:12]  *** Listing of results directory ***
[2025-12-02 15:24:12] total 1313444
[2025-12-02 15:24:12] -rw-r--r-- 1 boinc boinc    576529 Nov 28 01:58 pilot3.tar.gz
[2025-12-02 15:24:12] -rwx------ 1 boinc boinc     36292 Nov 28 02:00 runpilot2-wrapper.sh
[2025-12-02 15:24:12] -rw-r--r-- 1 boinc boinc      5112 Nov 28 02:01 queuedata.json
[2025-12-02 15:24:12] -rw-r--r-- 1 boinc boinc       100 Dec  2 07:33 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-02 15:24:12] -rwxr-xr-x 1 boinc boinc      7986 Dec  2 07:33 run_atlas
[2025-12-02 15:24:12] -rw-r--r-- 1 boinc boinc       105 Dec  2 07:33 job.xml
[2025-12-02 15:24:12] -rw-r--r-- 2 boinc boinc 409108858 Dec  2 07:33 EVNT.47483658._004445.pool.root.1
[2025-12-02 15:24:12] -rw-r--r-- 2 boinc boinc    590108 Dec  2 07:33 input.tar.gz
[2025-12-02 15:24:12] -rw-r--r-- 2 boinc boinc     15847 Dec  2 07:33 start_atlas.sh
[2025-12-02 15:24:12] drwxrwx--x 2 boinc boinc      4096 Dec  2 07:33 shared
[2025-12-02 15:24:12] -rw-r--r-- 1 boinc boinc         0 Dec  2 07:33 boinc_setup_complete
[2025-12-02 15:24:12] -rw-r--r-- 1 boinc boinc      6449 Dec  2 07:33 init_data.xml
[2025-12-02 15:24:12] -rw-r--r-- 1 boinc boinc         0 Dec  2 07:33 boinc_lockfile
[2025-12-02 15:24:12] -rw-r--r-- 1 boinc boinc      2788 Dec  2 07:33 pandaJob.out
[2025-12-02 15:24:12] -rw------- 1 boinc boinc    990257 Dec  2 07:33 agis_schedconf.cvmfs.json
[2025-12-02 15:24:12] drwx------ 5 boinc boinc      4096 Dec  2 07:33 pilot3
[2025-12-02 15:24:12] -rw-r--r-- 1 boinc boinc       532 Dec  2 15:19 boinc_task_state.xml
[2025-12-02 15:24:12] -rw------- 1 boinc boinc        95 Dec  2 15:22 pilot_heartbeat.json
[2025-12-02 15:24:12] -rw------- 1 boinc boinc 921688419 Dec  2 15:23 HITS.47556185._002085.pool.root.1
[2025-12-02 15:24:12] -rw------- 1 boinc boinc      1021 Dec  2 15:23 memory_monitor_summary.json
[2025-12-02 15:24:12] -rw------- 1 boinc boinc   1516240 Dec  2 15:23 agis_ddmendpoints.agis.ALL.json
[2025-12-02 15:24:12] -rw------- 1 boinc boinc   1159322 Dec  2 15:23 log.47556185._002085.job.log.tgz.1
[2025-12-02 15:24:12] -rw------- 1 boinc boinc      8579 Dec  2 15:23 heartbeat.json
[2025-12-02 15:24:12] -rw-r--r-- 1 boinc boinc      8192 Dec  2 15:23 boinc_mmap_file
[2025-12-02 15:24:12] -rw-r--r-- 1 boinc boinc        28 Dec  2 15:23 wrapper_checkpoint.txt
[2025-12-02 15:24:12] -rw------- 1 boinc boinc      5152 Dec  2 15:24 pilotlog.txt
[2025-12-02 15:24:12] -rw------- 1 boinc boinc   3972983 Dec  2 15:24 log.47556185._002085.job.log.1
[2025-12-02 15:24:12] -rw------- 1 boinc boinc       353 Dec  2 15:24 output.list
[2025-12-02 15:24:12] -rw-r--r-- 1 boinc boinc       620 Dec  2 15:24 runtime_log
[2025-12-02 15:24:12] -rw------- 1 boinc boinc   5150720 Dec  2 15:24 result.tar.gz
[2025-12-02 15:24:12] -rw-r--r-- 1 boinc boinc      8918 Dec  2 15:24 runtime_log.err
[2025-12-02 15:24:12] -rw------- 1 boinc boinc       669 Dec  2 15:24 XQzKDmc11i8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmY0KKDmQTLVum.diag
[2025-12-02 15:24:12] -rw-r--r-- 1 boinc boinc     11715 Dec  2 15:24 stderr.txt
[2025-12-02 15:24:12] HITS file was successfully produced:
[2025-12-02 15:24:12] -rw------- 1 boinc boinc 921688419 Dec  2 15:23 shared/HITS.pool.root.1
[2025-12-02 15:24:12]  *** Contents of shared directory: ***
[2025-12-02 15:24:12] total 1305248
[2025-12-02 15:24:12] -rw-r--r-- 2 boinc boinc 409108858 Dec  2 07:33 ATLAS.root_0
[2025-12-02 15:24:12] -rw-r--r-- 2 boinc boinc    590108 Dec  2 07:33 input.tar.gz
[2025-12-02 15:24:12] -rw-r--r-- 2 boinc boinc     15847 Dec  2 07:33 start_atlas.sh
[2025-12-02 15:24:12] -rw------- 1 boinc boinc 921688419 Dec  2 15:23 HITS.pool.root.1
[2025-12-02 15:24:12] -rw------- 1 boinc boinc   5150720 Dec  2 15:24 result.tar.gz
15:24:14 (1385542): run_atlas exited; CPU time 83254.929950
15:24:14 (1385542): called boinc_finish(0)

</stderr_txt>
]]>

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