Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
16:38:06 (2438341): wrapper (7.7.26015): starting
16:38:06 (2438341): wrapper: running run_atlas (--nthreads 4)
[2025-11-29 16:38:06] Arguments: --nthreads 4
[2025-11-29 16:38:06] Threads: 4
[2025-11-29 16:38:06] Checking for CVMFS
[2025-11-29 16:38:06] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-29 16:38:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-29 16:38:06] Running cvmfs_config stat atlas.cern.ch
[2025-11-29 16:38:06] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-29 16:38:06] 2.13.2.0 621261 15848 68172 153449 2 81 3916123 4096000 0 130560 0 4777602 99.828 1220970 2033 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
[2025-11-29 16:38:06] CVMFS is ok
[2025-11-29 16:38:06] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-29 16:38:06] Small home clusters do not require a local http proxy but it is suggested if
[2025-11-29 16:38:06] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-11-29 16:38:06] Further information can be found at the LHC@home message board.
[2025-11-29 16:38:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-29 16:38:06] Checking for apptainer binary...
[2025-11-29 16:38:06] apptainer is not installed, using version from CVMFS
[2025-11-29 16:38:06] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-29 16:38:09] localhost
[2025-11-29 16:38:09] apptainer works
[2025-11-29 16:38:09] Set ATHENA_PROC_NUMBER=4
[2025-11-29 16:38:09] Set ATHENA_CORE_NUMBER=4
[2025-11-29 16:38:09] Starting ATLAS job with PandaID=6899792341
[2025-11-29 16:38:09] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-30 08:34:05]  *** The last 200 lines of the pilot log: ***
[2025-11-30 08:34:05] 2025-11-30 08:33:01,750 | INFO     | PID=2442022 has CPU usage=9.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-30 08:34:05] 2025-11-30 08:33:01,851 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-30 08:34:05] 2025-11-30 08:33:01,851 | INFO     | found 4 cores (4 cores per socket, 1 socket) , CPU MHz: 1999.999
[2025-11-30 08:34:05] 2025-11-30 08:33:01,852 | INFO     | using path: /var/lib/boinc/slots/3/PanDA_Pilot-6899792341/memory_monitor_summary.json (trf name=prmon)
[2025-11-30 08:34:05] 2025-11-30 08:33:01,853 | INFO     | extracted standard info from prmon json
[2025-11-30 08:34:05] 2025-11-30 08:33:01,853 | INFO     | extracted standard memory fields from prmon json
[2025-11-30 08:34:05] 2025-11-30 08:33:01,853 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-30 08:34:05] 2025-11-30 08:33:01,863 | INFO     | fitting pss+swap vs Time
[2025-11-30 08:34:05] 2025-11-30 08:33:01,863 | INFO     | sum of square deviations: 256728869390.0
[2025-11-30 08:34:05] 2025-11-30 08:33:01,881 | INFO     | sum of deviations: 563132061112.999
[2025-11-30 08:34:05] 2025-11-30 08:33:01,881 | INFO     | mean x: 1764462935.0
[2025-11-30 08:34:05] 2025-11-30 08:33:01,881 | INFO     | mean y: 2299268.766773163
[2025-11-30 08:34:05] 2025-11-30 08:33:01,881 | INFO     | intersect: -3868031526.9280915
[2025-11-30 08:34:05] 2025-11-30 08:33:01,882 | INFO     | chi2: 4.247418788118912
[2025-11-30 08:34:05] 2025-11-30 08:33:01,882 | INFO     | sum of square deviations: 252649564997.5
[2025-11-30 08:34:05] 2025-11-30 08:33:01,900 | INFO     | sum of deviations: 777737432505.5004
[2025-11-30 08:34:05] 2025-11-30 08:33:01,900 | INFO     | mean x: 1764462782.5
[2025-11-30 08:34:05] 2025-11-30 08:33:01,900 | INFO     | mean y: 2307285.2259100643
[2025-11-30 08:34:05] 2025-11-30 08:33:01,900 | INFO     | intersect: -5429282332.696607
[2025-11-30 08:34:05] 2025-11-30 08:33:01,901 | INFO     | chi2: 1.6375927888334756
[2025-11-30 08:34:05] 2025-11-30 08:33:01,901 | INFO     | current chi2=1.6375927888334756 (change=61.4449888149897 %)
[2025-11-30 08:34:05] 2025-11-30 08:33:01,901 | INFO     | sum of square deviations: 248613703280.0
[2025-11-30 08:34:05] 2025-11-30 08:33:01,918 | INFO     | sum of deviations: 775601375467.0
[2025-11-30 08:34:05] 2025-11-30 08:33:01,918 | INFO     | mean x: 1764462630.0
[2025-11-30 08:34:05] 2025-11-30 08:33:01,918 | INFO     | mean y: 2307203.783638321
[2025-11-30 08:34:05] 2025-11-30 08:33:01,918 | INFO     | intersect: -5502295417.604579
[2025-11-30 08:34:05] 2025-11-30 08:33:01,919 | INFO     | chi2: 1.6302443188883882
[2025-11-30 08:34:05] 2025-11-30 08:33:01,919 | INFO     | current chi2=1.6302443188883882 (change=0.44873609576175755 %)
[2025-11-30 08:34:05] 2025-11-30 08:33:01,919 | INFO     | right removable region: 928
[2025-11-30 08:34:05] 2025-11-30 08:33:01,920 | INFO     | sum of square deviations: 252649564997.5
[2025-11-30 08:34:05] 2025-11-30 08:33:01,937 | INFO     | sum of deviations: 422487018120.50006
[2025-11-30 08:34:05] 2025-11-30 08:33:01,937 | INFO     | mean x: 1764463087.5
[2025-11-30 08:34:05] 2025-11-30 08:33:01,937 | INFO     | mean y: 2304513.881156317
[2025-11-30 08:34:05] 2025-11-30 08:33:01,937 | INFO     | intersect: -2948275466.05644
[2025-11-30 08:34:05] 2025-11-30 08:33:01,938 | INFO     | chi2: 2.7447601751733313
[2025-11-30 08:34:05] 2025-11-30 08:33:01,938 | INFO     | current chi2=2.7447601751733313 (change=35.37815995797003 %)
[2025-11-30 08:34:05] 2025-11-30 08:33:01,939 | INFO     | sum of square deviations: 248613703280.0
[2025-11-30 08:34:05] 2025-11-30 08:33:01,956 | INFO     | sum of deviations: 414768639838.9998
[2025-11-30 08:34:05] 2025-11-30 08:33:01,956 | INFO     | mean x: 1764463240.0
[2025-11-30 08:34:05] 2025-11-30 08:33:01,956 | INFO     | mean y: 2304805.0107642626
[2025-11-30 08:34:05] 2025-11-30 08:33:01,956 | INFO     | intersect: -2941394630.882674
[2025-11-30 08:34:05] 2025-11-30 08:33:01,956 | INFO     | chi2: 2.743833988050253
[2025-11-30 08:34:05] 2025-11-30 08:33:01,956 | INFO     | current chi2=2.743833988050253 (change=0.03374382692723372 %)
[2025-11-30 08:34:05] 2025-11-30 08:33:01,957 | INFO     | left removable region: 20
[2025-11-30 08:34:05] 2025-11-30 08:33:01,957 | INFO     | sum of square deviations: 232132229607.0
[2025-11-30 08:34:05] 2025-11-30 08:33:01,967 | INFO     | monitor loop #4304: job 0:6899792341 is in state 'finished'
[2025-11-30 08:34:05] 2025-11-30 08:33:01,972 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-30 08:34:05] 2025-11-30 08:33:01,974 | INFO     | sum of deviations: 625557564257.0005
[2025-11-30 08:34:05] 2025-11-30 08:33:01,974 | INFO     | mean x: 1764463209.5
[2025-11-30 08:34:05] 2025-11-30 08:33:01,974 | INFO     | mean y: 2312832.3568281936
[2025-11-30 08:34:05] 2025-11-30 08:33:01,974 | INFO     | intersect: -4752620635.626478
[2025-11-30 08:34:05] 2025-11-30 08:33:01,975 | INFO     | chi2: 0.10130426595652516
[2025-11-30 08:34:05] 2025-11-30 08:33:01,975 | INFO     | current memory leak: 2.69 B/s (using 908 data points, chi2=0.10)
[2025-11-30 08:34:05] 2025-11-30 08:33:01,975 | INFO     | could have reported an average CPU frequency of 1999 MHz (35 samples)
[2025-11-30 08:34:05] 2025-11-30 08:33:01,975 | INFO     | ..............................
[2025-11-30 08:34:05] 2025-11-30 08:33:01,975 | INFO     | . Timing measurements:
[2025-11-30 08:34:05] 2025-11-30 08:33:01,975 | INFO     | . get job = 0 s
[2025-11-30 08:34:05] 2025-11-30 08:33:01,975 | INFO     | . initial setup = 6 s
[2025-11-30 08:34:05] 2025-11-30 08:33:01,975 | INFO     | . payload setup = 4 s
[2025-11-30 08:34:05] 2025-11-30 08:33:01,975 | INFO     | . stage-in = 0 s
[2025-11-30 08:34:05] 2025-11-30 08:33:01,975 | INFO     | . payload execution = 57242 s
[2025-11-30 08:34:05] 2025-11-30 08:33:01,976 | INFO     | . stage-out = 7 s
[2025-11-30 08:34:05] 2025-11-30 08:33:01,976 | INFO     | . log creation = 0 s
[2025-11-30 08:34:05] 2025-11-30 08:33:01,976 | INFO     | ..............................
[2025-11-30 08:34:05] 2025-11-30 08:33:02,032 | INFO     | 
[2025-11-30 08:34:05] 2025-11-30 08:33:02,032 | INFO     | job summary report
[2025-11-30 08:34:05] 2025-11-30 08:33:02,032 | INFO     | --------------------------------------------------
[2025-11-30 08:34:05] 2025-11-30 08:33:02,032 | INFO     | PanDA job id: 6899792341
[2025-11-30 08:34:05] 2025-11-30 08:33:02,032 | INFO     | task id: 47556161
[2025-11-30 08:34:05] 2025-11-30 08:33:02,032 | INFO     | errors: (none)
[2025-11-30 08:34:05] 2025-11-30 08:33:02,032 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-30 08:34:05] 2025-11-30 08:33:02,032 | INFO     | pilot state: finished 
[2025-11-30 08:34:05] 2025-11-30 08:33:02,032 | INFO     | transexitcode: 0
[2025-11-30 08:34:05] 2025-11-30 08:33:02,032 | INFO     | exeerrorcode: 0
[2025-11-30 08:34:05] 2025-11-30 08:33:02,032 | INFO     | exeerrordiag: 
[2025-11-30 08:34:05] 2025-11-30 08:33:02,032 | INFO     | exitcode: 0
[2025-11-30 08:34:05] 2025-11-30 08:33:02,032 | INFO     | exitmsg: OK
[2025-11-30 08:34:05] 2025-11-30 08:33:02,032 | INFO     | cpuconsumptiontime: 225740 s
[2025-11-30 08:34:05] 2025-11-30 08:33:02,032 | INFO     | nevents: 1000
[2025-11-30 08:34:05] 2025-11-30 08:33:02,032 | INFO     | neventsw: 0
[2025-11-30 08:34:05] 2025-11-30 08:33:02,032 | INFO     | pid: 2448396
[2025-11-30 08:34:05] 2025-11-30 08:33:02,032 | INFO     | pgrp: 2448396
[2025-11-30 08:34:05] 2025-11-30 08:33:02,033 | INFO     | corecount: 4
[2025-11-30 08:34:05] 2025-11-30 08:33:02,033 | INFO     | event service: False
[2025-11-30 08:34:05] 2025-11-30 08:33:02,033 | INFO     | sizes: {0: 2284316, 3: 2284578, 11: 2284606, 57250: 2336607, 57258: 2345657, 57265: 2345847}
[2025-11-30 08:34:05] 2025-11-30 08:33:02,033 | INFO     | --------------------------------------------------
[2025-11-30 08:34:05] 2025-11-30 08:33:02,033 | INFO     | 
[2025-11-30 08:34:05] 2025-11-30 08:33:02,033 | INFO     | executing command: ls -lF /var/lib/boinc/slots/3
[2025-11-30 08:34:05] 2025-11-30 08:33:02,049 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-30 08:34:05] 2025-11-30 08:33:02,049 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-30 08:34:05] 2025-11-30 08:33:02,049 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-30 08:34:05] 2025-11-30 08:33:02,049 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-30 08:34:05] 2025-11-30 08:33:02,049 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-30 08:34:05] 2025-11-30 08:33:02,049 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-30 08:34:05] 2025-11-30 08:33:02,049 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-30 08:34:05] 2025-11-30 08:33:02,050 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-30 08:34:05] 2025-11-30 08:33:02,050 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-30 08:34:05] 2025-11-30 08:33:02,050 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-30 08:34:05] 2025-11-30 08:33:02,050 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-30 08:34:05] 2025-11-30 08:33:02,050 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-30 08:34:05] 2025-11-30 08:33:02,050 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-30 08:34:05] 2025-11-30 08:33:02,050 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-30 08:34:05] 2025-11-30 08:33:02,050 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-30 08:34:05] 2025-11-30 08:33:02,050 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-30 08:34:05] 2025-11-30 08:33:02,050 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-30 08:34:05] 2025-11-30 08:33:02,050 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-30 08:34:05] 2025-11-30 08:33:02,050 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-30 08:34:05] 2025-11-30 08:33:02,050 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-30 08:34:05] 2025-11-30 08:33:02,050 | INFO     | job 6899792341 has completed (purged errors)
[2025-11-30 08:34:05] 2025-11-30 08:33:02,050 | INFO     | overall cleanup function is called
[2025-11-30 08:34:05] 2025-11-30 08:33:03,062 | INFO     | --- collectZombieJob: --- 10, [2448396]
[2025-11-30 08:34:05] 2025-11-30 08:33:03,063 | INFO     | zombie collector waiting for pid 2448396
[2025-11-30 08:34:05] 2025-11-30 08:33:03,063 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-30 08:34:05] 2025-11-30 08:33:03,063 | INFO     | collected zombie processes
[2025-11-30 08:34:05] 2025-11-30 08:33:03,063 | INFO     | will attempt to kill all subprocesses of pid=2448396
[2025-11-30 08:34:05] 2025-11-30 08:33:03,095 | INFO     | process IDs to be killed: [2448396] (in reverse order)
[2025-11-30 08:34:05] 2025-11-30 08:33:03,119 | WARNING  | found no corresponding commands to process id(s)
[2025-11-30 08:34:05] 2025-11-30 08:33:03,120 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-30 08:34:05] 2025-11-30 08:33:03,121 | INFO     | did not find any defunct processes belonging to 2448396
[2025-11-30 08:34:05] 2025-11-30 08:33:03,121 | INFO     | did not find any defunct processes belonging to 2448396
[2025-11-30 08:34:05] 2025-11-30 08:33:03,123 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-30 08:34:05] 2025-11-30 08:33:03,123 | INFO     | ready for new job
[2025-11-30 08:34:05] 2025-11-30 08:33:03,123 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-30 08:34:05] 2025-11-30 08:33:03,127 | INFO     | ***************************************
[2025-11-30 08:34:05] 2025-11-30 08:33:03,127 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-30 08:34:05] 2025-11-30 08:33:03,127 | INFO     | ***************************************
[2025-11-30 08:34:05] 2025-11-30 08:33:03,127 | INFO     | 
[2025-11-30 08:34:05] 2025-11-30 08:33:03,127 | INFO     | pilot is running in a VM
[2025-11-30 08:34:05] 2025-11-30 08:33:03,127 | INFO     | architecture information:
[2025-11-30 08:34:05] 2025-11-30 08:33:03,128 | INFO     | executing command: cat /etc/os-release
[2025-11-30 08:34:05] 2025-11-30 08:33:03,137 | INFO     | cat /etc/os-release:
[2025-11-30 08:34:05] NAME="CentOS Linux"
[2025-11-30 08:34:05] VERSION="7 (Core)"
[2025-11-30 08:34:05] ID="centos"
[2025-11-30 08:34:05] ID_LIKE="rhel fedora"
[2025-11-30 08:34:05] VERSION_ID="7"
[2025-11-30 08:34:05] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-30 08:34:05] ANSI_COLOR="0;31"
[2025-11-30 08:34:05] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-30 08:34:05] HOME_URL="https://www.centos.org/"
[2025-11-30 08:34:05] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-30 08:34:05] 
[2025-11-30 08:34:05] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-30 08:34:05] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-30 08:34:05] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-30 08:34:05] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-30 08:34:05] 
[2025-11-30 08:34:05] 2025-11-30 08:33:03,137 | INFO     | ***************************************
[2025-11-30 08:34:05] 2025-11-30 08:33:03,640 | INFO     | executing command: df -mP /var/lib/boinc/slots/3
[2025-11-30 08:34:05] 2025-11-30 08:33:03,652 | INFO     | sufficient remaining disk space (147706609664 B)
[2025-11-30 08:34:05] 2025-11-30 08:33:03,652 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-30 08:34:05] 2025-11-30 08:33:03,652 | INFO     | current server update state: UPDATING_FINAL
[2025-11-30 08:34:05] 2025-11-30 08:33:03,652 | INFO     | update_server=False
[2025-11-30 08:34:05] 2025-11-30 08:33:03,652 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-30 08:34:05] 2025-11-30 08:33:03,652 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-30 08:34:05] 2025-11-30 08:33:03,653 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-30 08:34:05] 2025-11-30 08:33:03,653 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-30 08:34:05] 2025-11-30 08:33:03,653 | INFO     | aborting loop
[2025-11-30 08:34:05] 2025-11-30 08:33:04,145 | INFO     | all job control threads have been joined
[2025-11-30 08:34:05] 2025-11-30 08:33:04,658 | INFO     | [job] queue monitor thread has finished
[2025-11-30 08:34:05] 2025-11-30 08:33:04,658 | INFO     | [job] retrieve thread has finished
[2025-11-30 08:34:05] 2025-11-30 08:33:04,659 | INFO     | [job] job monitor thread has finished
[2025-11-30 08:34:05] 2025-11-30 08:33:04,739 | INFO     | [job] create_data_payload thread has finished
[2025-11-30 08:34:05] 2025-11-30 08:33:04,743 | INFO     | all data control threads have been joined
[2025-11-30 08:34:05] 2025-11-30 08:33:04,797 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-30 08:34:05] 2025-11-30 08:33:04,807 | INFO     | [payload] failed_post thread has finished
[2025-11-30 08:34:05] 2025-11-30 08:33:04,810 | INFO     | all payload control threads have been joined
[2025-11-30 08:34:05] 2025-11-30 08:33:05,151 | INFO     | [job] control thread has finished
[2025-11-30 08:34:05] 2025-11-30 08:33:05,241 | INFO     | [payload] validate_pre thread has finished
[2025-11-30 08:34:05] 2025-11-30 08:33:05,659 | INFO     | [data] copytool_out thread has finished
[2025-11-30 08:34:05] 2025-11-30 08:33:05,686 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-30 08:34:05] 2025-11-30 08:33:05,704 | INFO     | [data] copytool_in thread has finished
[2025-11-30 08:34:05] 2025-11-30 08:33:05,706 | INFO     | [job] validate thread has finished
[2025-11-30 08:34:05] 2025-11-30 08:33:05,748 | INFO     | [data] control thread has finished
[2025-11-30 08:34:05] 2025-11-30 08:33:05,816 | INFO     | [payload] control thread has finished
[2025-11-30 08:34:05] 2025-11-30 08:33:05,910 | INFO     | [payload] validate_post thread has finished
[2025-11-30 08:34:05] 2025-11-30 08:33:06,086 | INFO     | [payload] execute_payloads thread has finished
[2025-11-30 08:34:05] 2025-11-30 08:33:09,692 | INFO     | [data] queue_monitor thread has finished
[2025-11-30 08:34:05] 2025-11-30 08:33:33,820 | INFO     | PID=2442022 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-30 08:34:05] 2025-11-30 08:33:33,820 | INFO     | found 0 job(s) in 20 queues
[2025-11-30 08:34:05] 2025-11-30 08:33:33,820 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-30 08:34:05] 2025-11-30 08:33:33,820 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-30 08:34:05] 2025-11-30 08:33:58,119 | INFO     | [monitor] cgroup control has ended
[2025-11-30 08:34:05] 2025-11-30 08:33:59,747 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139925184649024)>', '<ExcThread(monitor, started 139924506396416)>']
[2025-11-30 08:34:05] 2025-11-30 08:33:59,946 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-30 08:34:05] 2025-11-30 08:33:59,946 | INFO     | [monitor] control thread has ended
[2025-11-30 08:34:05] 2025-11-30 08:34:04,770 | INFO     | all workflow threads have been joined
[2025-11-30 08:34:05] 2025-11-30 08:34:04,770 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-30 08:34:05] 2025-11-30 08:34:04,771 | INFO     | traces error code: 0
[2025-11-30 08:34:05] 2025-11-30 08:34:04,771 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-30 08:34:05] 2025-11-30 08:34:04,917 [wrapper] ==== pilot stdout END ====
[2025-11-30 08:34:05] 2025-11-30 08:34:04,919 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-30 08:34:05] 2025-11-30 08:34:04,921 [wrapper] pilotpid: 2442022
[2025-11-30 08:34:05] 2025-11-30 08:34:04,924 [wrapper] Pilot exit status: 0
[2025-11-30 08:34:05] 2025-11-30 08:34:04,939 [wrapper] pandaids: 6899792341
[2025-11-30 08:34:05] 2025-11-30 08:34:04,960 [wrapper] cleanup supervisor_pilot 2544935 2442023
[2025-11-30 08:34:05] 2025-11-30 08:34:04,963 [wrapper] Test setup, not cleaning
[2025-11-30 08:34:05] 2025-11-30 08:34:04,972 [wrapper] apfmon messages muted
[2025-11-30 08:34:05] 2025-11-30 08:34:04,974 [wrapper] ==== wrapper stdout END ====
[2025-11-30 08:34:05] 2025-11-30 08:34:04,976 [wrapper] ==== wrapper stderr END ====
[2025-11-30 08:34:05]  *** Error codes and diagnostics ***
[2025-11-30 08:34:05]     "exeErrorCode": 0,
[2025-11-30 08:34:05]     "exeErrorDiag": "",
[2025-11-30 08:34:05]     "pilotErrorCode": 0,
[2025-11-30 08:34:05]     "pilotErrorDiag": "",
[2025-11-30 08:34:05]  *** Listing of results directory ***
[2025-11-30 08:34:05] total 1315268
[2025-11-30 08:34:05] -rw-r--r-- 1 boinc boinc    576529 Nov 27 08:46 pilot3.tar.gz
[2025-11-30 08:34:05] -rwx------ 1 boinc boinc     36292 Nov 27 08:49 runpilot2-wrapper.sh
[2025-11-30 08:34:05] -rw-r--r-- 1 boinc boinc      5112 Nov 27 08:52 queuedata.json
[2025-11-30 08:34:05] -rw-r--r-- 1 boinc boinc       100 Nov 29 16:37 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-30 08:34:05] -rwxr-xr-x 1 boinc boinc      7986 Nov 29 16:37 run_atlas
[2025-11-30 08:34:05] -rw-r--r-- 1 boinc boinc       105 Nov 29 16:37 job.xml
[2025-11-30 08:34:05] -rw-r--r-- 2 boinc boinc 410516719 Nov 29 16:38 EVNT.47483658._002802.pool.root.1
[2025-11-30 08:34:05] -rw-r--r-- 2 boinc boinc     15847 Nov 29 16:38 start_atlas.sh
[2025-11-30 08:34:05] drwxrwx--x 2 boinc boinc      4096 Nov 29 16:38 shared
[2025-11-30 08:34:05] -rw-r--r-- 2 boinc boinc    590111 Nov 29 16:38 input.tar.gz
[2025-11-30 08:34:05] -rw-r--r-- 1 boinc boinc      5960 Nov 29 16:38 init_data.xml
[2025-11-30 08:34:05] -rw-r--r-- 1 boinc boinc         0 Nov 29 16:38 boinc_setup_complete
[2025-11-30 08:34:05] -rw-r--r-- 1 boinc boinc         0 Nov 29 16:38 boinc_lockfile
[2025-11-30 08:34:05] -rw-r--r-- 1 boinc boinc      2787 Nov 29 16:38 pandaJob.out
[2025-11-30 08:34:05] -rw------- 1 boinc boinc    991834 Nov 29 16:38 agis_schedconf.cvmfs.json
[2025-11-30 08:34:05] drwx------ 5 boinc boinc      4096 Nov 29 16:38 pilot3
[2025-11-30 08:34:05] -rw-r--r-- 1 boinc boinc       532 Nov 30 08:26 boinc_task_state.xml
[2025-11-30 08:34:05] -rw------- 1 boinc boinc 913133306 Nov 30 08:32 HITS.47556161._007844.pool.root.1
[2025-11-30 08:34:05] -rw------- 1 boinc boinc        95 Nov 30 08:32 pilot_heartbeat.json
[2025-11-30 08:34:05] -rw------- 1 boinc boinc      1019 Nov 30 08:32 memory_monitor_summary.json
[2025-11-30 08:34:05] -rw------- 1 boinc boinc   1516240 Nov 30 08:32 agis_ddmendpoints.agis.ALL.json
[2025-11-30 08:34:05] -rw------- 1 boinc boinc   1645323 Nov 30 08:32 log.47556161._007844.job.log.tgz.1
[2025-11-30 08:34:05] -rw------- 1 boinc boinc      8543 Nov 30 08:33 heartbeat.json
[2025-11-30 08:34:05] -rw-r--r-- 1 boinc boinc        29 Nov 30 08:33 wrapper_checkpoint.txt
[2025-11-30 08:34:05] -rw-r--r-- 1 boinc boinc      8192 Nov 30 08:33 boinc_mmap_file
[2025-11-30 08:34:05] -rw------- 1 boinc boinc      4811 Nov 30 08:34 pilotlog.txt
[2025-11-30 08:34:05] -rw------- 1 boinc boinc   7986609 Nov 30 08:34 log.47556161._007844.job.log.1
[2025-11-30 08:34:05] -rw------- 1 boinc boinc       353 Nov 30 08:34 output.list
[2025-11-30 08:34:05] -rw-r--r-- 1 boinc boinc       620 Nov 30 08:34 runtime_log
[2025-11-30 08:34:05] -rw------- 1 boinc boinc   9656320 Nov 30 08:34 result.tar.gz
[2025-11-30 08:34:05] -rw------- 1 boinc boinc       653 Nov 30 08:34 xbaMDmzrmi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmQqNKDmrGHLKo.diag
[2025-11-30 08:34:05] -rw-r--r-- 1 boinc boinc      8779 Nov 30 08:34 runtime_log.err
[2025-11-30 08:34:05] -rw-r--r-- 1 boinc boinc     21399 Nov 30 08:34 stderr.txt
[2025-11-30 08:34:05] HITS file was successfully produced:
[2025-11-30 08:34:05] -rw------- 1 boinc boinc 913133306 Nov 30 08:32 shared/HITS.pool.root.1
[2025-11-30 08:34:05]  *** Contents of shared directory: ***
[2025-11-30 08:34:05] total 1302664
[2025-11-30 08:34:05] -rw-r--r-- 2 boinc boinc 410516719 Nov 29 16:38 ATLAS.root_0
[2025-11-30 08:34:05] -rw-r--r-- 2 boinc boinc     15847 Nov 29 16:38 start_atlas.sh
[2025-11-30 08:34:05] -rw-r--r-- 2 boinc boinc    590111 Nov 29 16:38 input.tar.gz
[2025-11-30 08:34:05] -rw------- 1 boinc boinc 913133306 Nov 30 08:32 HITS.pool.root.1
[2025-11-30 08:34:05] -rw------- 1 boinc boinc   9656320 Nov 30 08:34 result.tar.gz
08:34:07 (2438341): run_atlas exited; CPU time 225543.922039
08:34:07 (2438341): called boinc_finish(0)

</stderr_txt>
]]>

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