Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
20:38:47 (2378843): wrapper (7.7.26015): starting
20:38:47 (2378843): wrapper: running run_atlas (--nthreads 3)
[2025-11-28 20:38:47] Arguments: --nthreads 3
[2025-11-28 20:38:47] Threads: 3
[2025-11-28 20:38:47] Checking for CVMFS
[2025-11-28 20:38:47] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-28 20:38:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-28 20:38:47] Running cvmfs_config stat atlas.cern.ch
[2025-11-28 20:38:47] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-28 20:38:47] 2.9.2.0 1330245 842 74528 153417 0 88 36430719 36864001 0 130560 0 3088874 99.998 22760 1762 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-28 20:38:47] CVMFS is ok
[2025-11-28 20:38:47] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-28 20:38:47] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-28 20:38:47] Further information can be found at the LHC@home message board.
[2025-11-28 20:38:47] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-28 20:38:47] Checking for apptainer binary...
[2025-11-28 20:38:47] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-28 20:38:47] Running /usr/bin/apptainer --version
[2025-11-28 20:38:47] apptainer version 1.4.1-1.1
[2025-11-28 20:38:47] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-28 20:38:47] thA335
[2025-11-28 20:38:47] apptainer works
[2025-11-28 20:38:47] Set ATHENA_PROC_NUMBER=3
[2025-11-28 20:38:47] Set ATHENA_CORE_NUMBER=3
[2025-11-28 20:38:47] Starting ATLAS job with PandaID=6893859047
[2025-11-28 20:38:47] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 20:43:02]  *** The last 200 lines of the pilot log: ***
[2025-11-28 20:43:02] 2025-11-28 19:42:10,354 | INFO     | update_server=False
[2025-11-28 20:43:02] 2025-11-28 19:42:10,354 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 20:43:02] 2025-11-28 19:42:10,354 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 20:43:02] 2025-11-28 19:42:10,831 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-28 20:43:02] 2025-11-28 19:42:10,831 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-28 20:43:02] 2025-11-28 19:42:10,832 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 20:43:02] 2025-11-28 19:42:10,832 | INFO     | will abort loop
[2025-11-28 20:43:02] 2025-11-28 19:42:10,873 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 20:43:02] 2025-11-28 19:42:11,135 | INFO     | all data control threads have been joined
[2025-11-28 20:43:02] 2025-11-28 19:42:11,360 | INFO     | [job] queue monitor thread has finished
[2025-11-28 20:43:02] 2025-11-28 19:42:11,361 | INFO     | [job] retrieve thread has finished
[2025-11-28 20:43:02] 2025-11-28 19:42:11,496 | INFO     | all payload control threads have been joined
[2025-11-28 20:43:02] 2025-11-28 19:42:11,838 | INFO     | [job] job monitor thread has finished
[2025-11-28 20:43:02] 2025-11-28 19:42:12,050 | INFO     | [payload] validate_post thread has finished
[2025-11-28 20:43:02] 2025-11-28 19:42:12,056 | INFO     | all job control threads have been joined
[2025-11-28 20:43:02] 2025-11-28 19:42:12,141 | INFO     | [data] control thread has finished
[2025-11-28 20:43:02] 2025-11-28 19:42:12,169 | INFO     | [data] copytool_in thread has finished
[2025-11-28 20:43:02] 2025-11-28 19:42:12,286 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 20:43:02] 2025-11-28 19:42:12,300 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 20:43:02] 2025-11-28 19:42:12,467 | INFO     | [job] validate thread has finished
[2025-11-28 20:43:02] 2025-11-28 19:42:12,502 | INFO     | [payload] control thread has finished
[2025-11-28 20:43:02] 2025-11-28 19:42:12,543 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 20:43:02] 2025-11-28 19:42:12,598 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 20:43:02] 2025-11-28 19:42:12,768 | INFO     | [payload] failed_post thread has finished
[2025-11-28 20:43:02] 2025-11-28 19:42:12,879 | INFO     | [data] copytool_out thread has finished
[2025-11-28 20:43:02] 2025-11-28 19:42:13,061 | INFO     | [job] control thread has finished
[2025-11-28 20:43:02] 2025-11-28 19:42:13,140 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 20:43:02] 2025-11-28 19:42:17,147 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 20:43:02] 2025-11-28 19:42:40,578 | INFO     | PID=2382570 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-28 20:43:02] 2025-11-28 19:42:40,578 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 20:43:02] 2025-11-28 19:42:40,578 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 20:43:02] 2025-11-28 19:42:40,578 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 20:43:02] 2025-11-28 19:42:55,750 | INFO     | [monitor] cgroup control has ended
[2025-11-28 20:43:02] 2025-11-28 19:42:56,973 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139900115928896)>', '<ExcThread(monitor, started 139899458004736)>']
[2025-11-28 20:43:02] 2025-11-28 19:42:57,668 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 20:43:02] 2025-11-28 19:42:57,669 | INFO     | [monitor] control thread has ended
[2025-11-28 20:43:02] 2025-11-28 19:43:01,999 | INFO     | all workflow threads have been joined
[2025-11-28 20:43:02] 2025-11-28 19:43:01,999 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 20:43:02] 2025-11-28 19:43:02,000 | INFO     | traces error code: 0
[2025-11-28 20:43:02] 2025-11-28 19:43:02,000 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 20:43:02] 2025-11-28 19:43:02,048 [wrapper] ==== pilot stdout END ====
[2025-11-28 20:43:02] 2025-11-28 19:43:02,051 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 20:43:02] 2025-11-28 19:43:02,054 [wrapper] pilotpid: 2382570
[2025-11-28 20:43:02] 2025-11-28 19:43:02,057 [wrapper] Pilot exit status: 0
[2025-11-28 20:43:02] 2025-11-28 19:43:02,065 [wrapper] pandaids: 6893859047
[2025-11-28 20:43:02] 2025-11-28 19:43:02,082 [wrapper] cleanup supervisor_pilot 2382576 2382571
[2025-11-28 20:43:02] 2025-11-28 19:43:02,085 [wrapper] Test setup, not cleaning
[2025-11-28 20:43:02] 2025-11-28 19:43:02,087 [wrapper] apfmon messages muted
[2025-11-28 20:43:02] 2025-11-28 19:43:02,090 [wrapper] ==== wrapper stdout END ====
[2025-11-28 20:43:02] 2025-11-28 19:43:02,092 [wrapper] ==== wrapper stderr END ====
[2025-11-28 20:43:02]  *** Error codes and diagnostics ***
[2025-11-28 20:43:02]     "exeErrorCode": 65,
[2025-11-28 20:43:02]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-28 20:43:02]     "pilotErrorCode": 1305,
[2025-11-28 20:43:02]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-28 20:43:02]  *** Listing of results directory ***
[2025-11-28 20:43:02] total 404912
[2025-11-28 20:43:02] -rw-r--r-- 1 boinc boinc    576529 Nov 20 14:12 pilot3.tar.gz
[2025-11-28 20:43:02] -rwx------ 1 boinc boinc     36292 Nov 20 14:26 runpilot2-wrapper.sh
[2025-11-28 20:43:02] -rw-r--r-- 1 boinc boinc      5112 Nov 20 14:26 queuedata.json
[2025-11-28 20:43:02] -rw-r--r-- 1 boinc boinc       100 Nov 28 20:38 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 20:43:02] -rwxr-xr-x 1 boinc boinc      7986 Nov 28 20:38 run_atlas
[2025-11-28 20:43:02] -rw-r--r-- 1 boinc boinc       105 Nov 28 20:38 job.xml
[2025-11-28 20:43:02] -rw-r--r-- 2 boinc boinc 410442302 Nov 28 20:38 EVNT.47493127._000529.pool.root.1
[2025-11-28 20:43:02] -rw-r--r-- 2 boinc boinc    590098 Nov 28 20:38 input.tar.gz
[2025-11-28 20:43:02] -rw-r--r-- 2 boinc boinc     15847 Nov 28 20:38 start_atlas.sh
[2025-11-28 20:43:02] drwxrwx--x 2 boinc boinc      4096 Nov 28 20:38 shared
[2025-11-28 20:43:02] -rw-r--r-- 1 boinc boinc         0 Nov 28 20:38 boinc_setup_complete
[2025-11-28 20:43:02] -rw-r--r-- 1 boinc boinc      6196 Nov 28 20:38 init_data.xml
[2025-11-28 20:43:02] -rw-r--r-- 1 boinc boinc         0 Nov 28 20:38 boinc_lockfile
[2025-11-28 20:43:02] -rw-r--r-- 1 boinc boinc      2785 Nov 28 20:38 pandaJob.out
[2025-11-28 20:43:02] -rw------- 1 boinc boinc    991794 Nov 28 20:38 agis_schedconf.cvmfs.json
[2025-11-28 20:43:02] -rw------- 1 boinc boinc   1516240 Nov 28 20:38 agis_ddmendpoints.agis.ALL.json
[2025-11-28 20:43:02] drwx------ 5 boinc boinc      4096 Nov 28 20:38 pilot3
[2025-11-28 20:43:02] -rw-r--r-- 1 boinc boinc       523 Nov 28 20:39 boinc_task_state.xml
[2025-11-28 20:43:02] -rw------- 1 boinc boinc       955 Nov 28 20:40 memory_monitor_summary.json
[2025-11-28 20:43:02] -rw------- 1 boinc boinc     54340 Nov 28 20:40 log.47523449._005289.job.log.tgz.1
[2025-11-28 20:43:02] -rw------- 1 boinc boinc        95 Nov 28 20:41 pilot_heartbeat.json
[2025-11-28 20:43:02] -rw------- 1 boinc boinc      8412 Nov 28 20:42 heartbeat.json
[2025-11-28 20:43:02] -rw-r--r-- 1 boinc boinc      8192 Nov 28 20:43 boinc_mmap_file
[2025-11-28 20:43:02] -rw-r--r-- 1 boinc boinc        23 Nov 28 20:43 wrapper_checkpoint.txt
[2025-11-28 20:43:02] -rw------- 1 boinc boinc      4938 Nov 28 20:43 pilotlog.txt
[2025-11-28 20:43:02] -rw------- 1 boinc boinc     93648 Nov 28 20:43 log.47523449._005289.job.log.1
[2025-11-28 20:43:02] -rw------- 1 boinc boinc       186 Nov 28 20:43 output.list
[2025-11-28 20:43:02] -rw-r--r-- 1 boinc boinc       620 Nov 28 20:43 runtime_log
[2025-11-28 20:43:02] -rw------- 1 boinc boinc    163840 Nov 28 20:43 result.tar.gz
[2025-11-28 20:43:02] -rw-r--r-- 1 boinc boinc      8744 Nov 28 20:43 runtime_log.err
[2025-11-28 20:43:02] -rw------- 1 boinc boinc       649 Nov 28 20:43 OD1KDmQrJg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm1vHKDmikqhWo.diag
[2025-11-28 20:43:02] -rw-r--r-- 1 boinc boinc      8019 Nov 28 20:43 stderr.txt
[2025-11-28 20:43:02] No HITS result produced
[2025-11-28 20:43:02]  *** Contents of shared directory: ***
[2025-11-28 20:43:02] total 401584
[2025-11-28 20:43:02] -rw-r--r-- 2 boinc boinc 410442302 Nov 28 20:38 ATLAS.root_0
[2025-11-28 20:43:02] -rw-r--r-- 2 boinc boinc    590098 Nov 28 20:38 input.tar.gz
[2025-11-28 20:43:02] -rw-r--r-- 2 boinc boinc     15847 Nov 28 20:38 start_atlas.sh
[2025-11-28 20:43:02] -rw------- 1 boinc boinc    163840 Nov 28 20:43 result.tar.gz
20:43:03 (2378843): run_atlas exited; CPU time 31.020840
20:43:03 (2378843): called boinc_finish(0)

</stderr_txt>
]]>

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