Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
01:02:12 (29517): wrapper (7.7.26015): starting
01:02:12 (29517): wrapper: running run_atlas (--nthreads 8)
[2025-11-29 01:02:12] Arguments: --nthreads 8
[2025-11-29 01:02:12] Threads: 8
[2025-11-29 01:02:12] Checking for CVMFS
[2025-11-29 01:02:12] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-29 01:02:12] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-29 01:02:12] Running cvmfs_config stat atlas.cern.ch
[2025-11-29 01:02:12] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-29 01:02:12] 2.11.0.0 11065 69243 71364 153423 3 1 3556981 4096000 0 130560 2 3632450 99.402 4267297 480 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2025-11-29 01:02:12] CVMFS is ok
[2025-11-29 01:02:12] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-29 01:02:12] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-29 01:02:12] Further information can be found at the LHC@home message board.
[2025-11-29 01:02:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-29 01:02:12] Checking for apptainer binary...
[2025-11-29 01:02:12] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2025-11-29 01:02:12] apptainer is not installed, using version from CVMFS
[2025-11-29 01:02:12] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-29 01:02:12] WARNING: Environment variable TMPDIR already has value [/tmp/job_10933078/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node384
[2025-11-29 01:02:12] apptainer works
[2025-11-29 01:02:13] Set ATHENA_PROC_NUMBER=8
[2025-11-29 01:02:13] Set ATHENA_CORE_NUMBER=8
[2025-11-29 01:02:13] Starting ATLAS job with PandaID=6898377692
[2025-11-29 01:02:13] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_10933078/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-29 05:25:52]  *** The last 200 lines of the pilot log: ***
[2025-11-29 05:25:52] 2025-11-29 04:25:14,850 | INFO     | time since job start (15775s) is within the limit (172800.0s)
[2025-11-29 05:25:52] 2025-11-29 04:25:16,629 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-11-29 05:25:52] 2025-11-29 04:25:16,855 | INFO     | time since job start (15777s) is within the limit (172800.0s)
[2025-11-29 05:25:52] 2025-11-29 04:25:16,884 | INFO     | monitor loop #1148: job 0:6898377692 is in state 'finished'
[2025-11-29 05:25:52] 2025-11-29 04:25:16,884 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-29 05:25:52] 2025-11-29 04:25:17,105 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-29 05:25:52] 2025-11-29 04:25:17,105 | INFO     | job 6898377692 has state=finished
[2025-11-29 05:25:52] 2025-11-29 04:25:17,105 | INFO     | preparing for final server update for job 6898377692 in state='finished'
[2025-11-29 05:25:52] 2025-11-29 04:25:17,105 | INFO     | this job has now completed (state=finished)
[2025-11-29 05:25:52] 2025-11-29 04:25:17,105 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-11-29 05:25:52] 2025-11-29 04:25:17,105 | INFO     | log transfer has been attempted: DONE
[2025-11-29 05:25:52] 2025-11-29 04:25:17,105 | INFO     | job 6898377692 has finished - writing final server update
[2025-11-29 05:25:52] 2025-11-29 04:25:17,105 | INFO     | total number of processed events: 1000 (read)
[2025-11-29 05:25:52] 2025-11-29 04:25:17,106 | INFO     | executing command: lscpu
[2025-11-29 05:25:52] 2025-11-29 04:25:17,137 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-29 05:25:52] 2025-11-29 04:25:18,860 | INFO     | time since job start (15779s) is within the limit (172800.0s)
[2025-11-29 05:25:52] 2025-11-29 04:25:19,098 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-29 05:25:52] 2025-11-29 04:25:19,102 | INFO     | found 64 cores (32 cores per socket, 2 sockets) , CPU MHz: 2915.83021875
[2025-11-29 05:25:52] 2025-11-29 04:25:19,108 | INFO     | using path: /tmp/job_10933078/atlas/pilot/slots/0/PanDA_Pilot-6898377692/memory_monitor_summary.json (trf name=prmon)
[2025-11-29 05:25:52] 2025-11-29 04:25:19,108 | INFO     | extracted standard info from prmon json
[2025-11-29 05:25:52] 2025-11-29 04:25:19,108 | INFO     | extracted standard memory fields from prmon json
[2025-11-29 05:25:52] 2025-11-29 04:25:19,108 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-29 05:25:52] 2025-11-29 04:25:19,111 | INFO     | fitting pss+swap vs Time
[2025-11-29 05:25:52] 2025-11-29 04:25:19,111 | INFO     | sum of square deviations: 5387301010.0
[2025-11-29 05:25:52] 2025-11-29 04:25:19,112 | INFO     | sum of deviations: 1802040070439.0002
[2025-11-29 05:25:52] 2025-11-29 04:25:19,112 | INFO     | mean x: 1764382427.0
[2025-11-29 05:25:52] 2025-11-29 04:25:19,112 | INFO     | mean y: 4352119.3513513515
[2025-11-29 05:25:52] 2025-11-29 04:25:19,112 | INFO     | intersect: -590177601168.6855
[2025-11-29 05:25:52] 2025-11-29 04:25:19,112 | INFO     | chi2: 8.899551441459876
[2025-11-29 05:25:52] 2025-11-29 04:25:19,112 | INFO     | sum of square deviations: 5081276667.5
[2025-11-29 05:25:52] 2025-11-29 04:25:19,113 | INFO     | sum of deviations: 1856319294636.5
[2025-11-29 05:25:52] 2025-11-29 04:25:19,113 | INFO     | mean x: 1764382274.5
[2025-11-29 05:25:52] 2025-11-29 04:25:19,113 | INFO     | mean y: 4378640.7913385825
[2025-11-29 05:25:52] 2025-11-29 04:25:19,113 | INFO     | intersect: -644569234171.4426
[2025-11-29 05:25:52] 2025-11-29 04:25:19,114 | INFO     | chi2: 8.525992280378755
[2025-11-29 05:25:52] 2025-11-29 04:25:19,114 | INFO     | current chi2=8.525992280378755 (change=4.197505498320282 %)
[2025-11-29 05:25:52] 2025-11-29 04:25:19,114 | INFO     | right removable region: 253
[2025-11-29 05:25:52] 2025-11-29 04:25:19,114 | INFO     | sum of square deviations: 5081276667.5
[2025-11-29 05:25:52] 2025-11-29 04:25:19,115 | INFO     | sum of deviations: 1696421591219.9998
[2025-11-29 05:25:52] 2025-11-29 04:25:19,115 | INFO     | mean x: 1764382579.5
[2025-11-29 05:25:52] 2025-11-29 04:25:19,115 | INFO     | mean y: 4404570.496062992
[2025-11-29 05:25:52] 2025-11-29 04:25:19,115 | INFO     | intersect: -589047697666.0209
[2025-11-29 05:25:52] 2025-11-29 04:25:19,115 | INFO     | chi2: 7.3939671118352335
[2025-11-29 05:25:52] 2025-11-29 04:25:19,115 | INFO     | current chi2=7.3939671118352335 (change=16.917530501713323 %)
[2025-11-29 05:25:52] 2025-11-29 04:25:19,115 | INFO     | left removable region: 10
[2025-11-29 05:25:52] 2025-11-29 04:25:19,115 | INFO     | sum of square deviations: 4449281562.0
[2025-11-29 05:25:52] 2025-11-29 04:25:19,116 | INFO     | sum of deviations: 1661729386411.0
[2025-11-29 05:25:52] 2025-11-29 04:25:19,116 | INFO     | mean x: 1764382549.0
[2025-11-29 05:25:52] 2025-11-29 04:25:19,116 | INFO     | mean y: 4458850.58436214
[2025-11-29 05:25:52] 2025-11-29 04:25:19,116 | INFO     | intersect: -658961778661.7284
[2025-11-29 05:25:52] 2025-11-29 04:25:19,116 | INFO     | chi2: 6.3876400132736295
[2025-11-29 05:25:52] 2025-11-29 04:25:19,116 | INFO     | current memory leak: 373.48 B/s (using 243 data points, chi2=6.39)
[2025-11-29 05:25:52] 2025-11-29 04:25:19,117 | INFO     | could have reported an average CPU frequency of 2848 MHz (12 samples)
[2025-11-29 05:25:52] 2025-11-29 04:25:19,117 | INFO     | ..............................
[2025-11-29 05:25:52] 2025-11-29 04:25:19,117 | INFO     | . Timing measurements:
[2025-11-29 05:25:52] 2025-11-29 04:25:19,117 | INFO     | . get job = 0 s
[2025-11-29 05:25:52] 2025-11-29 04:25:19,117 | INFO     | . initial setup = 1 s
[2025-11-29 05:25:52] 2025-11-29 04:25:19,117 | INFO     | . payload setup = 3 s
[2025-11-29 05:25:52] 2025-11-29 04:25:19,117 | INFO     | . stage-in = 0 s
[2025-11-29 05:25:52] 2025-11-29 04:25:19,117 | INFO     | . payload execution = 15755 s
[2025-11-29 05:25:52] 2025-11-29 04:25:19,117 | INFO     | . stage-out = 1 s
[2025-11-29 05:25:52] 2025-11-29 04:25:19,117 | INFO     | . log creation = 0 s
[2025-11-29 05:25:52] 2025-11-29 04:25:19,117 | INFO     | ..............................
[2025-11-29 05:25:52] 2025-11-29 04:25:19,370 | INFO     | 
[2025-11-29 05:25:52] 2025-11-29 04:25:19,371 | INFO     | job summary report
[2025-11-29 05:25:52] 2025-11-29 04:25:19,371 | INFO     | --------------------------------------------------
[2025-11-29 05:25:52] 2025-11-29 04:25:19,371 | INFO     | PanDA job id: 6898377692
[2025-11-29 05:25:52] 2025-11-29 04:25:19,371 | INFO     | task id: 47556173
[2025-11-29 05:25:52] 2025-11-29 04:25:19,371 | INFO     | errors: (none)
[2025-11-29 05:25:52] 2025-11-29 04:25:19,371 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-29 05:25:52] 2025-11-29 04:25:19,371 | INFO     | pilot state: finished 
[2025-11-29 05:25:52] 2025-11-29 04:25:19,371 | INFO     | transexitcode: 0
[2025-11-29 05:25:52] 2025-11-29 04:25:19,371 | INFO     | exeerrorcode: 0
[2025-11-29 05:25:52] 2025-11-29 04:25:19,371 | INFO     | exeerrordiag: 
[2025-11-29 05:25:52] 2025-11-29 04:25:19,371 | INFO     | exitcode: 0
[2025-11-29 05:25:52] 2025-11-29 04:25:19,371 | INFO     | exitmsg: OK
[2025-11-29 05:25:52] 2025-11-29 04:25:19,371 | INFO     | cpuconsumptiontime: 120897 s
[2025-11-29 05:25:52] 2025-11-29 04:25:19,371 | INFO     | nevents: 1000
[2025-11-29 05:25:52] 2025-11-29 04:25:19,371 | INFO     | neventsw: 0
[2025-11-29 05:25:52] 2025-11-29 04:25:19,371 | INFO     | pid: 17793
[2025-11-29 05:25:52] 2025-11-29 04:25:19,371 | INFO     | pgrp: 17793
[2025-11-29 05:25:52] 2025-11-29 04:25:19,371 | INFO     | corecount: 8
[2025-11-29 05:25:52] 2025-11-29 04:25:19,371 | INFO     | event service: False
[2025-11-29 05:25:52] 2025-11-29 04:25:19,371 | INFO     | sizes: {0: 2284158, 1: 2284468, 2: 2284730, 11: 2284758, 15761: 2317008, 15762: 2317007, 15763: 2326243, 15765: 2326299, 15767: 2326545}
[2025-11-29 05:25:52] 2025-11-29 04:25:19,372 | INFO     | --------------------------------------------------
[2025-11-29 05:25:52] 2025-11-29 04:25:19,372 | INFO     | 
[2025-11-29 05:25:52] 2025-11-29 04:25:19,372 | INFO     | executing command: ls -lF /tmp/job_10933078/atlas/pilot/slots/0
[2025-11-29 05:25:52] 2025-11-29 04:25:19,380 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-29 05:25:52] 2025-11-29 04:25:19,380 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-29 05:25:52] 2025-11-29 04:25:19,380 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-29 05:25:52] 2025-11-29 04:25:19,380 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-29 05:25:52] 2025-11-29 04:25:19,380 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-29 05:25:52] 2025-11-29 04:25:19,380 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-29 05:25:52] 2025-11-29 04:25:19,380 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-29 05:25:52] 2025-11-29 04:25:19,380 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-29 05:25:52] 2025-11-29 04:25:19,380 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-29 05:25:52] 2025-11-29 04:25:19,380 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-29 05:25:52] 2025-11-29 04:25:19,380 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-29 05:25:52] 2025-11-29 04:25:19,380 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-29 05:25:52] 2025-11-29 04:25:19,381 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-29 05:25:52] 2025-11-29 04:25:19,381 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-29 05:25:52] 2025-11-29 04:25:19,381 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-29 05:25:52] 2025-11-29 04:25:19,381 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-29 05:25:52] 2025-11-29 04:25:19,381 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-29 05:25:52] 2025-11-29 04:25:19,381 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-29 05:25:52] 2025-11-29 04:25:19,381 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-29 05:25:52] 2025-11-29 04:25:19,381 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-29 05:25:52] 2025-11-29 04:25:19,381 | INFO     | job 6898377692 has completed (purged errors)
[2025-11-29 05:25:52] 2025-11-29 04:25:19,381 | INFO     | overall cleanup function is called
[2025-11-29 05:25:52] 2025-11-29 04:25:20,388 | INFO     | --- collectZombieJob: --- 10, [17793]
[2025-11-29 05:25:52] 2025-11-29 04:25:20,388 | INFO     | zombie collector waiting for pid 17793
[2025-11-29 05:25:52] 2025-11-29 04:25:20,388 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-29 05:25:52] 2025-11-29 04:25:20,388 | INFO     | collected zombie processes
[2025-11-29 05:25:52] 2025-11-29 04:25:20,388 | INFO     | will attempt to kill all subprocesses of pid=17793
[2025-11-29 05:25:52] 2025-11-29 04:25:20,498 | INFO     | process IDs to be killed: [17793] (in reverse order)
[2025-11-29 05:25:52] 2025-11-29 04:25:20,540 | WARNING  | found no corresponding commands to process id(s)
[2025-11-29 05:25:52] 2025-11-29 04:25:20,540 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-29 05:25:52] 2025-11-29 04:25:20,546 | INFO     | did not find any defunct processes belonging to 17793
[2025-11-29 05:25:52] 2025-11-29 04:25:20,549 | INFO     | did not find any defunct processes belonging to 17793
[2025-11-29 05:25:52] 2025-11-29 04:25:20,549 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-29 05:25:52] 2025-11-29 04:25:20,549 | INFO     | ready for new job
[2025-11-29 05:25:52] 2025-11-29 04:25:20,549 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-29 05:25:52] 2025-11-29 04:25:20,550 | INFO     | ***************************************
[2025-11-29 05:25:52] 2025-11-29 04:25:20,550 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-29 05:25:52] 2025-11-29 04:25:20,550 | INFO     | ***************************************
[2025-11-29 05:25:52] 2025-11-29 04:25:20,550 | INFO     | 
[2025-11-29 05:25:52] 2025-11-29 04:25:20,564 | INFO     | architecture information:
[2025-11-29 05:25:52] 2025-11-29 04:25:20,564 | INFO     | executing command: cat /etc/os-release
[2025-11-29 05:25:52] 2025-11-29 04:25:20,572 | INFO     | cat /etc/os-release:
[2025-11-29 05:25:52] NAME="CentOS Linux"
[2025-11-29 05:25:52] VERSION="7 (Core)"
[2025-11-29 05:25:52] ID="centos"
[2025-11-29 05:25:52] ID_LIKE="rhel fedora"
[2025-11-29 05:25:52] VERSION_ID="7"
[2025-11-29 05:25:52] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-29 05:25:52] ANSI_COLOR="0;31"
[2025-11-29 05:25:52] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-29 05:25:52] HOME_URL="https://www.centos.org/"
[2025-11-29 05:25:52] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-29 05:25:52] 
[2025-11-29 05:25:52] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-29 05:25:52] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-29 05:25:52] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-29 05:25:52] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-29 05:25:52] 
[2025-11-29 05:25:52] 2025-11-29 04:25:20,572 | INFO     | ***************************************
[2025-11-29 05:25:52] 2025-11-29 04:25:21,075 | INFO     | executing command: df -mP /tmp/job_10933078/atlas/pilot/slots/0
[2025-11-29 05:25:52] 2025-11-29 04:25:21,084 | INFO     | sufficient remaining disk space (217510313984 B)
[2025-11-29 05:25:52] 2025-11-29 04:25:21,085 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-29 05:25:52] 2025-11-29 04:25:21,085 | INFO     | current server update state: UPDATING_FINAL
[2025-11-29 05:25:52] 2025-11-29 04:25:21,085 | INFO     | update_server=False
[2025-11-29 05:25:52] 2025-11-29 04:25:21,085 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-29 05:25:52] 2025-11-29 04:25:21,085 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-29 05:25:52] 2025-11-29 04:25:21,085 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-29 05:25:52] 2025-11-29 04:25:21,085 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-29 05:25:52] 2025-11-29 04:25:21,085 | INFO     | aborting loop
[2025-11-29 05:25:52] 2025-11-29 04:25:21,933 | INFO     | all payload control threads have been joined
[2025-11-29 05:25:52] 2025-11-29 04:25:22,063 | INFO     | all data control threads have been joined
[2025-11-29 05:25:52] 2025-11-29 04:25:22,090 | INFO     | [job] queue monitor thread has finished
[2025-11-29 05:25:52] 2025-11-29 04:25:22,090 | INFO     | [job] retrieve thread has finished
[2025-11-29 05:25:52] 2025-11-29 04:25:22,091 | INFO     | [job] job monitor thread has finished
[2025-11-29 05:25:52] 2025-11-29 04:25:22,165 | INFO     | [job] validate thread has finished
[2025-11-29 05:25:52] 2025-11-29 04:25:22,210 | INFO     | [payload] failed_post thread has finished
[2025-11-29 05:25:52] 2025-11-29 04:25:22,368 | INFO     | all job control threads have been joined
[2025-11-29 05:25:52] 2025-11-29 04:25:22,574 | INFO     | [payload] validate_post thread has finished
[2025-11-29 05:25:52] 2025-11-29 04:25:22,681 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-29 05:25:52] 2025-11-29 04:25:22,938 | INFO     | [payload] control thread has finished
[2025-11-29 05:25:52] 2025-11-29 04:25:23,068 | INFO     | [data] control thread has finished
[2025-11-29 05:25:52] 2025-11-29 04:25:23,090 | INFO     | [data] copytool_out thread has finished
[2025-11-29 05:25:52] 2025-11-29 04:25:23,350 | INFO     | [job] create_data_payload thread has finished
[2025-11-29 05:25:52] 2025-11-29 04:25:23,350 | INFO     | [payload] validate_pre thread has finished
[2025-11-29 05:25:52] 2025-11-29 04:25:23,373 | INFO     | [job] control thread has finished
[2025-11-29 05:25:52] 2025-11-29 04:25:23,401 | INFO     | [data] copytool_in thread has finished
[2025-11-29 05:25:52] 2025-11-29 04:25:23,521 | INFO     | [payload] execute_payloads thread has finished
[2025-11-29 05:25:52] 2025-11-29 04:25:26,687 | INFO     | [data] queue_monitor thread has finished
[2025-11-29 05:25:52] 2025-11-29 04:25:31,447 | INFO     | job.realtimelogging is not enabled
[2025-11-29 05:25:52] 2025-11-29 04:25:32,452 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-29 05:25:52] 2025-11-29 04:25:44,993 | INFO     | [monitor] cgroup control has ended
[2025-11-29 05:25:52] 2025-11-29 04:25:46,423 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456060819200)>']
[2025-11-29 05:25:52] 2025-11-29 04:25:51,448 | INFO     | all workflow threads have been joined
[2025-11-29 05:25:52] 2025-11-29 04:25:51,448 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-29 05:25:52] 2025-11-29 04:25:51,448 | INFO     | traces error code: 0
[2025-11-29 05:25:52] 2025-11-29 04:25:51,449 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-29 05:25:52] 2025-11-29 04:25:52,065 | INFO     | PID=2080 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-29 05:25:52] 2025-11-29 04:25:52,065 | INFO     | .. there are 6 such processes running
[2025-11-29 05:25:52] 2025-11-29 04:25:52,065 | INFO     | found 0 job(s) in 20 queues
[2025-11-29 05:25:52] 2025-11-29 04:25:52,065 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-29 05:25:52] 2025-11-29 04:25:52,065 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-29 05:25:52] 2025-11-29 04:25:52,065 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-29 05:25:52] 2025-11-29 04:25:52,065 | INFO     | [monitor] control thread has ended
[2025-11-29 05:25:52] 2025-11-29 04:25:52,125 [wrapper] ==== pilot stdout END ====
[2025-11-29 05:25:52] 2025-11-29 04:25:52,126 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-29 05:25:52] 2025-11-29 04:25:52,127 [wrapper] pilotpid: 2080
[2025-11-29 05:25:52] 2025-11-29 04:25:52,128 [wrapper] Pilot exit status: 0
[2025-11-29 05:25:52] 2025-11-29 04:25:52,133 [wrapper] pandaids: 6898377692
[2025-11-29 05:25:52] 2025-11-29 04:25:52,155 [wrapper] cleanup supervisor_pilot 25129 2081
[2025-11-29 05:25:52] 2025-11-29 04:25:52,157 [wrapper] Test setup, not cleaning
[2025-11-29 05:25:52] 2025-11-29 04:25:52,158 [wrapper] apfmon messages muted
[2025-11-29 05:25:52] 2025-11-29 04:25:52,159 [wrapper] ==== wrapper stdout END ====
[2025-11-29 05:25:52] 2025-11-29 04:25:52,160 [wrapper] ==== wrapper stderr END ====
[2025-11-29 05:25:52]  *** Error codes and diagnostics ***
[2025-11-29 05:25:52]     "exeErrorCode": 0,
[2025-11-29 05:25:52]     "exeErrorDiag": "",
[2025-11-29 05:25:52]     "pilotErrorCode": 0,
[2025-11-29 05:25:52]     "pilotErrorDiag": "",
[2025-11-29 05:25:52]  *** Listing of results directory ***
[2025-11-29 05:25:52] total 1308692
[2025-11-29 05:25:52] -rw------- 1 mf493845 unix-user    576529 Nov 26 17:12 pilot3.tar.gz
[2025-11-29 05:25:52] -rw------- 1 mf493845 unix-user      5112 Nov 26 17:22 queuedata.json
[2025-11-29 05:25:52] -rwx------ 1 mf493845 unix-user     36292 Nov 26 17:23 runpilot2-wrapper.sh
[2025-11-29 05:25:52] -rw------- 1 mf493845 unix-user       100 Nov 28 23:18 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-29 05:25:52] -rwxr-xr-x 1 mf493845 unix-user      7986 Nov 28 23:18 run_atlas
[2025-11-29 05:25:52] -rw------- 1 mf493845 unix-user       105 Nov 28 23:18 job.xml
[2025-11-29 05:25:52] -rw-r--r-- 2 mf493845 unix-user     15847 Nov 29 01:02 start_atlas.sh
[2025-11-29 05:25:52] drwxrwx--x 2 mf493845 unix-user       100 Nov 29 01:02 shared
[2025-11-29 05:25:52] -rw-r--r-- 2 mf493845 unix-user    590100 Nov 29 01:02 input.tar.gz
[2025-11-29 05:25:52] -rw-r--r-- 2 mf493845 unix-user 407683079 Nov 29 01:02 EVNT.47483658._003202.pool.root.1
[2025-11-29 05:25:52] -rw------- 1 mf493845 unix-user         0 Nov 29 01:02 boinc_setup_complete
[2025-11-29 05:25:52] -rw------- 1 mf493845 unix-user      6392 Nov 29 01:02 init_data.xml
[2025-11-29 05:25:52] -rw------- 1 mf493845 unix-user      8192 Nov 29 01:02 boinc_mmap_file
[2025-11-29 05:25:52] -rw------- 1 mf493845 unix-user         0 Nov 29 01:02 boinc_lockfile
[2025-11-29 05:25:52] -rw------- 1 mf493845 unix-user      2785 Nov 29 01:02 pandaJob.out
[2025-11-29 05:25:52] -rw------- 1 mf493845 unix-user    991818 Nov 29 01:02 agis_schedconf.cvmfs.json
[2025-11-29 05:25:52] drwx------ 5 mf493845 unix-user       440 Nov 29 01:02 pilot3
[2025-11-29 05:25:52] -rw------- 1 mf493845 unix-user 920906791 Nov 29 05:24 HITS.47556173._001584.pool.root.1
[2025-11-29 05:25:52] -rw------- 1 mf493845 unix-user      1038 Nov 29 05:25 memory_monitor_summary.json
[2025-11-29 05:25:52] -rw------- 1 mf493845 unix-user   1516240 Nov 29 05:25 agis_ddmendpoints.agis.ALL.json
[2025-11-29 05:25:52] -rw------- 1 mf493845 unix-user   1554967 Nov 29 05:25 log.47556173._001584.job.log.tgz.1
[2025-11-29 05:25:52] -rw------- 1 mf493845 unix-user      8602 Nov 29 05:25 heartbeat.json
[2025-11-29 05:25:52] -rw------- 1 mf493845 unix-user       819 Nov 29 05:25 pilotlog.txt
[2025-11-29 05:25:52] -rw------- 1 mf493845 unix-user        95 Nov 29 05:25 pilot_heartbeat.json
[2025-11-29 05:25:52] -rw------- 1 mf493845 unix-user   2259814 Nov 29 05:25 log.47556173._001584.job.log.1
[2025-11-29 05:25:52] -rw------- 1 mf493845 unix-user       353 Nov 29 05:25 output.list
[2025-11-29 05:25:52] -rw------- 1 mf493845 unix-user       620 Nov 29 05:25 runtime_log
[2025-11-29 05:25:52] -rw------- 1 mf493845 unix-user   3829760 Nov 29 05:25 result.tar.gz
[2025-11-29 05:25:52] -rw------- 1 mf493845 unix-user      9221 Nov 29 05:25 runtime_log.err
[2025-11-29 05:25:52] -rw------- 1 mf493845 unix-user       651 Nov 29 05:25 HwRMDmpTXi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmJ9MKDmpTsHGm.diag
[2025-11-29 05:25:52] -rw------- 1 mf493845 unix-user     22207 Nov 29 05:25 stderr.txt
[2025-11-29 05:25:52] HITS file was successfully produced:
[2025-11-29 05:25:52] -rw------- 1 mf493845 unix-user 920906791 Nov 29 05:24 shared/HITS.pool.root.1
[2025-11-29 05:25:52]  *** Contents of shared directory: ***
[2025-11-29 05:25:52] total 1301792
[2025-11-29 05:25:52] -rw-r--r-- 2 mf493845 unix-user     15847 Nov 29 01:02 start_atlas.sh
[2025-11-29 05:25:52] -rw-r--r-- 2 mf493845 unix-user    590100 Nov 29 01:02 input.tar.gz
[2025-11-29 05:25:52] -rw-r--r-- 2 mf493845 unix-user 407683079 Nov 29 01:02 ATLAS.root_0
[2025-11-29 05:25:52] -rw------- 1 mf493845 unix-user 920906791 Nov 29 05:24 HITS.pool.root.1
[2025-11-29 05:25:52] -rw------- 1 mf493845 unix-user   3829760 Nov 29 05:25 result.tar.gz
05:25:54 (29517): run_atlas exited; CPU time 121091.157864
05:25:54 (29517): called boinc_finish(0)

</stderr_txt>
]]>

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