Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
20:51:53 (2441381): wrapper (7.7.26015): starting
20:51:53 (2441381): wrapper: running run_atlas (--nthreads 3)
[2025-11-28 20:51:53] Arguments: --nthreads 3
[2025-11-28 20:51:53] Threads: 3
[2025-11-28 20:51:53] Checking for CVMFS
[2025-11-28 20:51:53] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-28 20:51:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-28 20:51:53] Running cvmfs_config stat atlas.cern.ch
[2025-11-28 20:51:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-28 20:51:53] 2.9.2.0 1330245 856 74864 153417 3 88 36430719 36864001 0 130560 0 3276731 99.999 22762 1761 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-28 20:51:53] CVMFS is ok
[2025-11-28 20:51:53] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-28 20:51:53] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-28 20:51:53] Further information can be found at the LHC@home message board.
[2025-11-28 20:51:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-28 20:51:53] Checking for apptainer binary...
[2025-11-28 20:51:53] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-28 20:51:53] Running /usr/bin/apptainer --version
[2025-11-28 20:51:53] apptainer version 1.4.1-1.1
[2025-11-28 20:51:53] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-28 20:51:53] thA335
[2025-11-28 20:51:53] apptainer works
[2025-11-28 20:51:53] Set ATHENA_PROC_NUMBER=3
[2025-11-28 20:51:53] Set ATHENA_CORE_NUMBER=3
[2025-11-28 20:51:53] Starting ATLAS job with PandaID=6893852752
[2025-11-28 20:51:53] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 20:56:12]  *** The last 200 lines of the pilot log: ***
[2025-11-28 20:56:12] 2025-11-28 19:55:24,748 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 20:56:12] 2025-11-28 19:55:24,748 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 20:56:12] 2025-11-28 19:55:24,748 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 20:56:12] 2025-11-28 19:55:24,748 | INFO     | aborting loop
[2025-11-28 20:56:12] 2025-11-28 19:55:25,534 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 20:56:12] 2025-11-28 19:55:25,681 | INFO     | all job control threads have been joined
[2025-11-28 20:56:12] 2025-11-28 19:55:25,753 | INFO     | [job] job monitor thread has finished
[2025-11-28 20:56:12] 2025-11-28 19:55:25,754 | INFO     | [job] retrieve thread has finished
[2025-11-28 20:56:12] 2025-11-28 19:55:25,755 | INFO     | [job] queue monitor thread has finished
[2025-11-28 20:56:12] 2025-11-28 19:55:25,774 | INFO     | all data control threads have been joined
[2025-11-28 20:56:12] 2025-11-28 19:55:25,808 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 20:56:12] 2025-11-28 19:55:26,138 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 20:56:12] 2025-11-28 19:55:26,230 | INFO     | all payload control threads have been joined
[2025-11-28 20:56:12] 2025-11-28 19:55:26,328 | INFO     | [data] copytool_in thread has finished
[2025-11-28 20:56:12] 2025-11-28 19:55:26,418 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 20:56:12] 2025-11-28 19:55:26,687 | INFO     | [job] control thread has finished
[2025-11-28 20:56:12] 2025-11-28 19:55:26,780 | INFO     | [data] control thread has finished
[2025-11-28 20:56:12] 2025-11-28 19:55:26,810 | INFO     | [payload] failed_post thread has finished
[2025-11-28 20:56:12] 2025-11-28 19:55:27,090 | INFO     | [payload] validate_post thread has finished
[2025-11-28 20:56:12] 2025-11-28 19:55:27,171 | INFO     | [job] validate thread has finished
[2025-11-28 20:56:12] 2025-11-28 19:55:27,235 | INFO     | [payload] control thread has finished
[2025-11-28 20:56:12] 2025-11-28 19:55:27,237 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 20:56:12] 2025-11-28 19:55:27,540 | INFO     | [data] copytool_out thread has finished
[2025-11-28 20:56:12] 2025-11-28 19:55:27,847 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 20:56:12] 2025-11-28 19:55:31,855 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 20:56:12] 2025-11-28 19:55:54,820 | INFO     | PID=2445118 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-28 20:56:12] 2025-11-28 19:55:54,820 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 20:56:12] 2025-11-28 19:55:54,820 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 20:56:12] 2025-11-28 19:55:54,820 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 20:56:12] 2025-11-28 19:56:05,955 | INFO     | [monitor] cgroup control has ended
[2025-11-28 20:56:12] 2025-11-28 19:56:07,701 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139929951098688)>', '<ExcThread(monitor, started 139929136908032)>']
[2025-11-28 20:56:12] 2025-11-28 19:56:07,885 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 20:56:12] 2025-11-28 19:56:07,886 | INFO     | [monitor] control thread has ended
[2025-11-28 20:56:12] 2025-11-28 19:56:12,727 | INFO     | all workflow threads have been joined
[2025-11-28 20:56:12] 2025-11-28 19:56:12,727 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 20:56:12] 2025-11-28 19:56:12,728 | INFO     | traces error code: 0
[2025-11-28 20:56:12] 2025-11-28 19:56:12,728 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 20:56:12] 2025-11-28 19:56:12,776 [wrapper] ==== pilot stdout END ====
[2025-11-28 20:56:12] 2025-11-28 19:56:12,780 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 20:56:12] 2025-11-28 19:56:12,783 [wrapper] pilotpid: 2445118
[2025-11-28 20:56:12] 2025-11-28 19:56:12,786 [wrapper] Pilot exit status: 0
[2025-11-28 20:56:12] 2025-11-28 19:56:12,793 [wrapper] pandaids: 6893852752
[2025-11-28 20:56:12] 2025-11-28 19:56:12,809 [wrapper] cleanup supervisor_pilot 2445124 2445119
[2025-11-28 20:56:12] 2025-11-28 19:56:12,811 [wrapper] Test setup, not cleaning
[2025-11-28 20:56:12] 2025-11-28 19:56:12,813 [wrapper] apfmon messages muted
[2025-11-28 20:56:12] 2025-11-28 19:56:12,816 [wrapper] ==== wrapper stdout END ====
[2025-11-28 20:56:12] 2025-11-28 19:56:12,818 [wrapper] ==== wrapper stderr END ====
[2025-11-28 20:56:12]  *** Error codes and diagnostics ***
[2025-11-28 20:56:12]     "exeErrorCode": 65,
[2025-11-28 20:56:12]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-28 20:56:12]     "pilotErrorCode": 1305,
[2025-11-28 20:56:12]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-28 20:56:12]  *** Listing of results directory ***
[2025-11-28 20:56:12] total 404112
[2025-11-28 20:56:12] -rw-r--r-- 1 boinc boinc    576529 Nov 20 13:07 pilot3.tar.gz
[2025-11-28 20:56:12] -rw-r--r-- 1 boinc boinc      5112 Nov 20 13:11 queuedata.json
[2025-11-28 20:56:12] -rwx------ 1 boinc boinc     36292 Nov 20 13:11 runpilot2-wrapper.sh
[2025-11-28 20:56:12] -rw-r--r-- 1 boinc boinc       100 Nov 28 20:51 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 20:56:12] -rwxr-xr-x 1 boinc boinc      7986 Nov 28 20:51 run_atlas
[2025-11-28 20:56:12] -rw-r--r-- 1 boinc boinc       105 Nov 28 20:51 job.xml
[2025-11-28 20:56:12] -rw-r--r-- 2 boinc boinc 409609204 Nov 28 20:51 EVNT.47493127._000401.pool.root.1
[2025-11-28 20:56:12] -rw-r--r-- 2 boinc boinc    590103 Nov 28 20:51 input.tar.gz
[2025-11-28 20:56:12] -rw-r--r-- 2 boinc boinc     15847 Nov 28 20:51 start_atlas.sh
[2025-11-28 20:56:12] drwxrwx--x 2 boinc boinc      4096 Nov 28 20:51 shared
[2025-11-28 20:56:12] -rw-r--r-- 1 boinc boinc         0 Nov 28 20:51 boinc_setup_complete
[2025-11-28 20:56:12] -rw-r--r-- 1 boinc boinc      6196 Nov 28 20:51 init_data.xml
[2025-11-28 20:56:12] -rw-r--r-- 1 boinc boinc         0 Nov 28 20:51 boinc_lockfile
[2025-11-28 20:56:12] -rw-r--r-- 1 boinc boinc      2786 Nov 28 20:51 pandaJob.out
[2025-11-28 20:56:12] -rw------- 1 boinc boinc    991794 Nov 28 20:52 agis_schedconf.cvmfs.json
[2025-11-28 20:56:12] -rw------- 1 boinc boinc   1516240 Nov 28 20:52 agis_ddmendpoints.agis.ALL.json
[2025-11-28 20:56:12] drwx------ 5 boinc boinc      4096 Nov 28 20:52 pilot3
[2025-11-28 20:56:12] -rw-r--r-- 1 boinc boinc       523 Nov 28 20:53 boinc_task_state.xml
[2025-11-28 20:56:12] -rw------- 1 boinc boinc       956 Nov 28 20:53 memory_monitor_summary.json
[2025-11-28 20:56:12] -rw------- 1 boinc boinc     55853 Nov 28 20:53 log.47523449._004004.job.log.tgz.1
[2025-11-28 20:56:12] -rw------- 1 boinc boinc        95 Nov 28 20:55 pilot_heartbeat.json
[2025-11-28 20:56:12] -rw------- 1 boinc boinc      8414 Nov 28 20:55 heartbeat.json
[2025-11-28 20:56:12] -rw-r--r-- 1 boinc boinc      8192 Nov 28 20:56 boinc_mmap_file
[2025-11-28 20:56:12] -rw-r--r-- 1 boinc boinc        23 Nov 28 20:56 wrapper_checkpoint.txt
[2025-11-28 20:56:12] -rw------- 1 boinc boinc      4752 Nov 28 20:56 pilotlog.txt
[2025-11-28 20:56:12] -rw------- 1 boinc boinc     93896 Nov 28 20:56 log.47523449._004004.job.log.1
[2025-11-28 20:56:12] -rw------- 1 boinc boinc       186 Nov 28 20:56 output.list
[2025-11-28 20:56:12] -rw-r--r-- 1 boinc boinc       620 Nov 28 20:56 runtime_log
[2025-11-28 20:56:12] -rw------- 1 boinc boinc    174080 Nov 28 20:56 result.tar.gz
[2025-11-28 20:56:12] -rw-r--r-- 1 boinc boinc      8744 Nov 28 20:56 runtime_log.err
[2025-11-28 20:56:12] -rw------- 1 boinc boinc       649 Nov 28 20:56 izQMDmfgIg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmmjHKDmACUBwn.diag
[2025-11-28 20:56:12] -rw-r--r-- 1 boinc boinc      7710 Nov 28 20:56 stderr.txt
[2025-11-28 20:56:12] No HITS result produced
[2025-11-28 20:56:12]  *** Contents of shared directory: ***
[2025-11-28 20:56:12] total 400784
[2025-11-28 20:56:12] -rw-r--r-- 2 boinc boinc 409609204 Nov 28 20:51 ATLAS.root_0
[2025-11-28 20:56:12] -rw-r--r-- 2 boinc boinc    590103 Nov 28 20:51 input.tar.gz
[2025-11-28 20:56:12] -rw-r--r-- 2 boinc boinc     15847 Nov 28 20:51 start_atlas.sh
[2025-11-28 20:56:12] -rw------- 1 boinc boinc    174080 Nov 28 20:56 result.tar.gz
20:56:14 (2441381): run_atlas exited; CPU time 32.175032
20:56:14 (2441381): called boinc_finish(0)

</stderr_txt>
]]>

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