Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
18:19:42 (7091): wrapper (7.7.26015): starting
18:19:42 (7091): wrapper: running run_atlas (--nthreads 12)
[2025-11-28 18:19:42] Arguments: --nthreads 12
[2025-11-28 18:19:42] Threads: 12
[2025-11-28 18:19:42] Checking for CVMFS
[2025-11-28 18:19:42] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-28 18:19:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-28 18:19:42] Running cvmfs_config stat atlas.cern.ch
[2025-11-28 18:19:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-28 18:19:42] 2.13.0.0 3496 315 68168 153414 1 82 3627612 4096000 0 130560 0 230720 99.990 7964 383 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://128.142.248.156:3125 1
[2025-11-28 18:19:42] CVMFS is ok
[2025-11-28 18:19:42] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-28 18:19:42] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-28 18:19:42] Further information can be found at the LHC@home message board.
[2025-11-28 18:19:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-28 18:19:42] Checking for apptainer binary...
[2025-11-28 18:19:42] which: no apptainer in (/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin)
[2025-11-28 18:19:42] apptainer is not installed, using version from CVMFS
[2025-11-28 18:19:42] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-28 18:19:43] dagobert
[2025-11-28 18:19:43] apptainer works
[2025-11-28 18:19:43] Set ATHENA_PROC_NUMBER=12
[2025-11-28 18:19:43] Set ATHENA_CORE_NUMBER=12
[2025-11-28 18:19:43] Starting ATLAS job with PandaID=6898989534
[2025-11-28 18:19:43] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/12 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 20:55:09]  *** The last 200 lines of the pilot log: ***
[2025-11-28 20:55:09] 2025-11-28 19:54:22,058 | INFO     | total number of processed events: 1000 (read)
[2025-11-28 20:55:09] 2025-11-28 19:54:22,059 | INFO     | executing command: lscpu
[2025-11-28 20:55:09] 2025-11-28 19:54:22,070 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-28 20:55:09] 2025-11-28 19:54:22,287 | INFO     | time since job start (9275s) is within the limit (172800.0s)
[2025-11-28 20:55:09] 2025-11-28 19:54:23,384 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-28 20:55:09] 2025-11-28 19:54:23,386 | INFO     | found 6 cores (6 cores per socket, 1 socket) HT, CPU MHz: 3291.1733333333336
[2025-11-28 20:55:09] 2025-11-28 19:54:23,387 | INFO     | using path: /var/lib/boinc/slots/12/PanDA_Pilot-6898989534/memory_monitor_summary.json (trf name=prmon)
[2025-11-28 20:55:09] 2025-11-28 19:54:23,387 | INFO     | extracted standard info from prmon json
[2025-11-28 20:55:09] 2025-11-28 19:54:23,387 | INFO     | extracted standard memory fields from prmon json
[2025-11-28 20:55:09] 2025-11-28 19:54:23,387 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-28 20:55:09] 2025-11-28 19:54:23,389 | INFO     | fitting pss+swap vs Time
[2025-11-28 20:55:09] 2025-11-28 19:54:23,389 | INFO     | sum of square deviations: 1088905998.0
[2025-11-28 20:55:09] 2025-11-28 19:54:23,389 | INFO     | sum of deviations: 54814813286.499985
[2025-11-28 20:55:09] 2025-11-28 19:54:23,389 | INFO     | mean x: 1764355008.5
[2025-11-28 20:55:09] 2025-11-28 19:54:23,389 | INFO     | mean y: 3634070.5065789474
[2025-11-28 20:55:09] 2025-11-28 19:54:23,389 | INFO     | intersect: -88812839105.01228
[2025-11-28 20:55:09] 2025-11-28 19:54:23,389 | INFO     | chi2: 2.4676955782314396
[2025-11-28 20:55:09] 2025-11-28 19:54:23,389 | INFO     | sum of square deviations: 984941258.0
[2025-11-28 20:55:09] 2025-11-28 19:54:23,390 | INFO     | sum of deviations: 74164908309.0
[2025-11-28 20:55:09] 2025-11-28 19:54:23,390 | INFO     | mean x: 1764354856.0
[2025-11-28 20:55:09] 2025-11-28 19:54:23,390 | INFO     | mean y: 3661746.5646258504
[2025-11-28 20:55:09] 2025-11-28 19:54:23,390 | INFO     | intersect: -132850165887.26459
[2025-11-28 20:55:09] 2025-11-28 19:54:23,390 | INFO     | chi2: 1.601768392882061
[2025-11-28 20:55:09] 2025-11-28 19:54:23,390 | INFO     | current chi2=1.601768392882061 (change=35.090518984111306 %)
[2025-11-28 20:55:09] 2025-11-28 19:54:23,390 | INFO     | sum of square deviations: 887813855.5
[2025-11-28 20:55:09] 2025-11-28 19:54:23,390 | INFO     | sum of deviations: 68935641646.00002
[2025-11-28 20:55:09] 2025-11-28 19:54:23,390 | INFO     | mean x: 1764354703.5
[2025-11-28 20:55:09] 2025-11-28 19:54:23,390 | INFO     | mean y: 3653533.591549296
[2025-11-28 20:55:09] 2025-11-28 19:54:23,391 | INFO     | intersect: -136992320142.00807
[2025-11-28 20:55:09] 2025-11-28 19:54:23,391 | INFO     | chi2: 1.6031646247331282
[2025-11-28 20:55:09] 2025-11-28 19:54:23,391 | INFO     | current chi2=1.6031646247331282 (change=-0.0871681484833739 %)
[2025-11-28 20:55:09] 2025-11-28 19:54:23,391 | INFO     | right removable region: 141
[2025-11-28 20:55:09] 2025-11-28 19:54:23,391 | INFO     | sum of square deviations: 984941258.0
[2025-11-28 20:55:09] 2025-11-28 19:54:23,391 | INFO     | sum of deviations: 17669659610.999992
[2025-11-28 20:55:09] 2025-11-28 19:54:23,391 | INFO     | mean x: 1764355161.0
[2025-11-28 20:55:09] 2025-11-28 19:54:23,391 | INFO     | mean y: 3687832.646258503
[2025-11-28 20:55:09] 2025-11-28 19:54:23,391 | INFO     | intersect: -31648509569.547535
[2025-11-28 20:55:09] 2025-11-28 19:54:23,391 | INFO     | chi2: 0.9229513311561398
[2025-11-28 20:55:09] 2025-11-28 19:54:23,391 | INFO     | current chi2=0.9229513311561398 (change=62.59865522725436 %)
[2025-11-28 20:55:09] 2025-11-28 19:54:23,391 | INFO     | sum of square deviations: 887813855.5
[2025-11-28 20:55:09] 2025-11-28 19:54:23,392 | INFO     | sum of deviations: 10925521509.999998
[2025-11-28 20:55:09] 2025-11-28 19:54:23,392 | INFO     | mean x: 1764355313.5
[2025-11-28 20:55:09] 2025-11-28 19:54:23,392 | INFO     | mean y: 3698395.9577464787
[2025-11-28 20:55:09] 2025-11-28 19:54:23,392 | INFO     | intersect: -21708625431.28291
[2025-11-28 20:55:09] 2025-11-28 19:54:23,392 | INFO     | chi2: 0.9080635979910028
[2025-11-28 20:55:09] 2025-11-28 19:54:23,392 | INFO     | current chi2=0.9080635979910028 (change=1.6130572287585125 %)
[2025-11-28 20:55:09] 2025-11-28 19:54:23,392 | INFO     | left removable region: 20
[2025-11-28 20:55:09] 2025-11-28 19:54:23,392 | INFO     | sum of square deviations: 549294020.0
[2025-11-28 20:55:09] 2025-11-28 19:54:23,392 | INFO     | sum of deviations: 18259723896.0
[2025-11-28 20:55:09] 2025-11-28 19:54:23,392 | INFO     | mean x: 1764355283.0
[2025-11-28 20:55:09] 2025-11-28 19:54:23,392 | INFO     | mean y: 3739451.47107438
[2025-11-28 20:55:09] 2025-11-28 19:54:23,392 | INFO     | intersect: -58647254640.962234
[2025-11-28 20:55:09] 2025-11-28 19:54:23,392 | INFO     | chi2: 0.01742711973694564
[2025-11-28 20:55:09] 2025-11-28 19:54:23,392 | INFO     | current memory leak: 33.24 B/s (using 121 data points, chi2=0.02)
[2025-11-28 20:55:09] 2025-11-28 19:54:23,393 | INFO     | could have reported an average CPU frequency of 3880 MHz (9 samples)
[2025-11-28 20:55:09] 2025-11-28 19:54:23,393 | INFO     | ..............................
[2025-11-28 20:55:09] 2025-11-28 19:54:23,393 | INFO     | . Timing measurements:
[2025-11-28 20:55:09] 2025-11-28 19:54:23,393 | INFO     | . get job = 0 s
[2025-11-28 20:55:09] 2025-11-28 19:54:23,393 | INFO     | . initial setup = 1 s
[2025-11-28 20:55:09] 2025-11-28 19:54:23,393 | INFO     | . payload setup = 2 s
[2025-11-28 20:55:09] 2025-11-28 19:54:23,393 | INFO     | . stage-in = 0 s
[2025-11-28 20:55:09] 2025-11-28 19:54:23,393 | INFO     | . payload execution = 9252 s
[2025-11-28 20:55:09] 2025-11-28 19:54:23,393 | INFO     | . stage-out = 0 s
[2025-11-28 20:55:09] 2025-11-28 19:54:23,393 | INFO     | . log creation = 0 s
[2025-11-28 20:55:09] 2025-11-28 19:54:23,393 | INFO     | ..............................
[2025-11-28 20:55:09] 2025-11-28 19:54:23,830 | INFO     | 
[2025-11-28 20:55:09] 2025-11-28 19:54:23,830 | INFO     | job summary report
[2025-11-28 20:55:09] 2025-11-28 19:54:23,830 | INFO     | --------------------------------------------------
[2025-11-28 20:55:09] 2025-11-28 19:54:23,830 | INFO     | PanDA job id: 6898989534
[2025-11-28 20:55:09] 2025-11-28 19:54:23,830 | INFO     | task id: 47556161
[2025-11-28 20:55:09] 2025-11-28 19:54:23,830 | INFO     | errors: (none)
[2025-11-28 20:55:09] 2025-11-28 19:54:23,830 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-28 20:55:09] 2025-11-28 19:54:23,830 | INFO     | pilot state: finished 
[2025-11-28 20:55:09] 2025-11-28 19:54:23,830 | INFO     | transexitcode: 0
[2025-11-28 20:55:09] 2025-11-28 19:54:23,830 | INFO     | exeerrorcode: 0
[2025-11-28 20:55:09] 2025-11-28 19:54:23,830 | INFO     | exeerrordiag: 
[2025-11-28 20:55:09] 2025-11-28 19:54:23,830 | INFO     | exitcode: 0
[2025-11-28 20:55:09] 2025-11-28 19:54:23,830 | INFO     | exitmsg: OK
[2025-11-28 20:55:09] 2025-11-28 19:54:23,830 | INFO     | cpuconsumptiontime: 107965 s
[2025-11-28 20:55:09] 2025-11-28 19:54:23,830 | INFO     | nevents: 1000
[2025-11-28 20:55:09] 2025-11-28 19:54:23,830 | INFO     | neventsw: 0
[2025-11-28 20:55:09] 2025-11-28 19:54:23,830 | INFO     | pid: 17492
[2025-11-28 20:55:09] 2025-11-28 19:54:23,830 | INFO     | pgrp: 17492
[2025-11-28 20:55:09] 2025-11-28 19:54:23,830 | INFO     | corecount: 12
[2025-11-28 20:55:09] 2025-11-28 19:54:23,830 | INFO     | event service: False
[2025-11-28 20:55:09] 2025-11-28 19:54:23,830 | INFO     | sizes: {0: 2284318, 1: 2284580, 10: 2284608, 9257: 2313931, 9258: 2322927, 9259: 2322983, 9263: 2323421}
[2025-11-28 20:55:09] 2025-11-28 19:54:23,830 | INFO     | --------------------------------------------------
[2025-11-28 20:55:09] 2025-11-28 19:54:23,830 | INFO     | 
[2025-11-28 20:55:09] 2025-11-28 19:54:23,830 | INFO     | executing command: ls -lF /var/lib/boinc/slots/12
[2025-11-28 20:55:09] 2025-11-28 19:54:23,840 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-28 20:55:09] 2025-11-28 19:54:23,840 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-28 20:55:09] 2025-11-28 19:54:23,840 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-28 20:55:09] 2025-11-28 19:54:23,840 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-28 20:55:09] 2025-11-28 19:54:23,840 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-28 20:55:09] 2025-11-28 19:54:23,840 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-28 20:55:09] 2025-11-28 19:54:23,840 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-28 20:55:09] 2025-11-28 19:54:23,840 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-28 20:55:09] 2025-11-28 19:54:23,840 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-28 20:55:09] 2025-11-28 19:54:23,840 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-28 20:55:09] 2025-11-28 19:54:23,840 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-28 20:55:09] 2025-11-28 19:54:23,840 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-28 20:55:09] 2025-11-28 19:54:23,840 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-28 20:55:09] 2025-11-28 19:54:23,840 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-28 20:55:09] 2025-11-28 19:54:23,841 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-28 20:55:09] 2025-11-28 19:54:23,841 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-28 20:55:09] 2025-11-28 19:54:23,841 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-28 20:55:09] 2025-11-28 19:54:23,841 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-28 20:55:09] 2025-11-28 19:54:23,841 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-28 20:55:09] 2025-11-28 19:54:23,841 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-28 20:55:09] 2025-11-28 19:54:23,841 | INFO     | job 6898989534 has completed (purged errors)
[2025-11-28 20:55:09] 2025-11-28 19:54:23,841 | INFO     | overall cleanup function is called
[2025-11-28 20:55:09] 2025-11-28 19:54:24,853 | INFO     | --- collectZombieJob: --- 10, [17492]
[2025-11-28 20:55:09] 2025-11-28 19:54:24,853 | INFO     | zombie collector waiting for pid 17492
[2025-11-28 20:55:09] 2025-11-28 19:54:24,853 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-28 20:55:09] 2025-11-28 19:54:24,853 | INFO     | collected zombie processes
[2025-11-28 20:55:09] 2025-11-28 19:54:24,853 | INFO     | will attempt to kill all subprocesses of pid=17492
[2025-11-28 20:55:09] 2025-11-28 19:54:24,881 | INFO     | process IDs to be killed: [17492] (in reverse order)
[2025-11-28 20:55:09] 2025-11-28 19:54:24,897 | WARNING  | found no corresponding commands to process id(s)
[2025-11-28 20:55:09] 2025-11-28 19:54:24,897 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-28 20:55:09] 2025-11-28 19:54:24,898 | INFO     | did not find any defunct processes belonging to 17492
[2025-11-28 20:55:09] 2025-11-28 19:54:24,900 | INFO     | did not find any defunct processes belonging to 17492
[2025-11-28 20:55:09] 2025-11-28 19:54:24,900 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 20:55:09] 2025-11-28 19:54:24,900 | INFO     | ready for new job
[2025-11-28 20:55:09] 2025-11-28 19:54:24,900 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 20:55:09] 2025-11-28 19:54:24,901 | INFO     | ***************************************
[2025-11-28 20:55:09] 2025-11-28 19:54:24,901 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 20:55:09] 2025-11-28 19:54:24,901 | INFO     | ***************************************
[2025-11-28 20:55:09] 2025-11-28 19:54:24,901 | INFO     | 
[2025-11-28 20:55:09] 2025-11-28 19:54:24,902 | INFO     | architecture information:
[2025-11-28 20:55:09] 2025-11-28 19:54:24,902 | INFO     | executing command: cat /etc/os-release
[2025-11-28 20:55:09] 2025-11-28 19:54:24,909 | INFO     | cat /etc/os-release:
[2025-11-28 20:55:09] NAME="CentOS Linux"
[2025-11-28 20:55:09] VERSION="7 (Core)"
[2025-11-28 20:55:09] ID="centos"
[2025-11-28 20:55:09] ID_LIKE="rhel fedora"
[2025-11-28 20:55:09] VERSION_ID="7"
[2025-11-28 20:55:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 20:55:09] ANSI_COLOR="0;31"
[2025-11-28 20:55:09] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 20:55:09] HOME_URL="https://www.centos.org/"
[2025-11-28 20:55:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 20:55:09] 
[2025-11-28 20:55:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 20:55:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 20:55:09] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 20:55:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 20:55:09] 
[2025-11-28 20:55:09] 2025-11-28 19:54:24,909 | INFO     | ***************************************
[2025-11-28 20:55:09] 2025-11-28 19:54:25,412 | INFO     | executing command: df -mP /var/lib/boinc/slots/12
[2025-11-28 20:55:09] 2025-11-28 19:54:25,421 | INFO     | sufficient remaining disk space (122278641664 B)
[2025-11-28 20:55:09] 2025-11-28 19:54:25,421 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 20:55:09] 2025-11-28 19:54:25,421 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 20:55:09] 2025-11-28 19:54:25,421 | INFO     | update_server=False
[2025-11-28 20:55:09] 2025-11-28 19:54:25,421 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 20:55:09] 2025-11-28 19:54:25,513 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 20:55:09] 2025-11-28 19:54:25,513 | INFO     | aborting loop
[2025-11-28 20:55:09] 2025-11-28 19:54:25,679 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 20:55:09] 2025-11-28 19:54:25,727 | INFO     | all job control threads have been joined
[2025-11-28 20:55:09] 2025-11-28 19:54:26,170 | INFO     | all data control threads have been joined
[2025-11-28 20:55:09] 2025-11-28 19:54:26,194 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 20:55:09] 2025-11-28 19:54:26,427 | INFO     | [job] retrieve thread has finished
[2025-11-28 20:55:09] 2025-11-28 19:54:26,434 | INFO     | [data] copytool_in thread has finished
[2025-11-28 20:55:09] 2025-11-28 19:54:26,519 | INFO     | [job] job monitor thread has finished
[2025-11-28 20:55:09] 2025-11-28 19:54:26,520 | INFO     | [payload] validate_post thread has finished
[2025-11-28 20:55:09] 2025-11-28 19:54:26,524 | INFO     | all payload control threads have been joined
[2025-11-28 20:55:09] 2025-11-28 19:54:26,564 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 20:55:09] 2025-11-28 19:54:26,732 | INFO     | [job] control thread has finished
[2025-11-28 20:55:09] 2025-11-28 19:54:27,176 | INFO     | [data] control thread has finished
[2025-11-28 20:55:09] 2025-11-28 19:54:27,328 | INFO     | [job] validate thread has finished
[2025-11-28 20:55:09] 2025-11-28 19:54:27,472 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 20:55:09] 2025-11-28 19:54:27,499 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 20:55:09] 2025-11-28 19:54:27,528 | INFO     | [payload] control thread has finished
[2025-11-28 20:55:09] 2025-11-28 19:54:27,735 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 20:55:09] 2025-11-28 19:54:28,004 | INFO     | [payload] failed_post thread has finished
[2025-11-28 20:55:09] 2025-11-28 19:54:28,200 | INFO     | [data] copytool_out thread has finished
[2025-11-28 20:55:09] 2025-11-28 19:54:28,426 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 20:55:09] 2025-11-28 19:54:29,432 | INFO     | [job] queue monitor thread has finished
[2025-11-28 20:55:09] 2025-11-28 19:54:29,685 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 20:55:09] 2025-11-28 19:54:55,350 | INFO     | PID=10922 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-28 20:55:09] 2025-11-28 19:54:55,350 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 20:55:09] 2025-11-28 19:54:55,350 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 20:55:09] 2025-11-28 19:54:55,350 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 20:55:09] 2025-11-28 19:55:02,873 | INFO     | [monitor] cgroup control has ended
[2025-11-28 20:55:09] 2025-11-28 19:55:04,002 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140469949028160)>', '<ExcThread(monitor, started 140469556197120)>']
[2025-11-28 20:55:09] 2025-11-28 19:55:04,392 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 20:55:09] 2025-11-28 19:55:04,392 | INFO     | [monitor] control thread has ended
[2025-11-28 20:55:09] 2025-11-28 19:55:09,027 | INFO     | all workflow threads have been joined
[2025-11-28 20:55:09] 2025-11-28 19:55:09,027 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 20:55:09] 2025-11-28 19:55:09,028 | INFO     | traces error code: 0
[2025-11-28 20:55:09] 2025-11-28 19:55:09,028 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 20:55:09] 2025-11-28 19:55:09,062 [wrapper] ==== pilot stdout END ====
[2025-11-28 20:55:09] 2025-11-28 19:55:09,063 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 20:55:09] 2025-11-28 19:55:09,064 [wrapper] pilotpid: 10922
[2025-11-28 20:55:09] 2025-11-28 19:55:09,065 [wrapper] Pilot exit status: 0
[2025-11-28 20:55:09] 2025-11-28 19:55:09,069 [wrapper] pandaids: 6898989534
[2025-11-28 20:55:09] 2025-11-28 19:55:09,079 [wrapper] cleanup supervisor_pilot  2981 10923
[2025-11-28 20:55:09] 2025-11-28 19:55:09,080 [wrapper] Test setup, not cleaning
[2025-11-28 20:55:09] 2025-11-28 19:55:09,081 [wrapper] apfmon messages muted
[2025-11-28 20:55:09] 2025-11-28 19:55:09,082 [wrapper] ==== wrapper stdout END ====
[2025-11-28 20:55:09] 2025-11-28 19:55:09,083 [wrapper] ==== wrapper stderr END ====
[2025-11-28 20:55:09]  *** Error codes and diagnostics ***
[2025-11-28 20:55:09]     "exeErrorCode": 0,
[2025-11-28 20:55:09]     "exeErrorDiag": "",
[2025-11-28 20:55:09]     "pilotErrorCode": 0,
[2025-11-28 20:55:09]     "pilotErrorDiag": "",
[2025-11-28 20:55:09]  *** Listing of results directory ***
[2025-11-28 20:55:09] total 1310396
[2025-11-28 20:55:09] -rw-r--r-- 1 boinc boinc    576529 Nov 27 02:09 pilot3.tar.gz
[2025-11-28 20:55:09] -rwx------ 1 boinc boinc     36292 Nov 27 02:28 runpilot2-wrapper.sh
[2025-11-28 20:55:09] -rw-r--r-- 1 boinc boinc      5112 Nov 27 02:30 queuedata.json
[2025-11-28 20:55:09] -rw-r--r-- 1 boinc boinc       100 Nov 28 18:19 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 20:55:09] -rwxr-xr-x 1 boinc boinc      7986 Nov 28 18:19 run_atlas
[2025-11-28 20:55:09] -rw-r--r-- 1 boinc boinc       105 Nov 28 18:19 job.xml
[2025-11-28 20:55:09] -rw-r--r-- 2 boinc boinc     15847 Nov 28 18:19 start_atlas.sh
[2025-11-28 20:55:09] drwxrwx--x 2 boinc boinc      4096 Nov 28 18:19 shared
[2025-11-28 20:55:09] -rw-r--r-- 2 boinc boinc    590110 Nov 28 18:19 input.tar.gz
[2025-11-28 20:55:09] -rw-r--r-- 1 boinc boinc      7170 Nov 28 18:19 init_data.xml
[2025-11-28 20:55:09] -rw-r--r-- 2 boinc boinc 410296585 Nov 28 18:19 EVNT.47483658._002776.pool.root.1
[2025-11-28 20:55:09] -rw-r--r-- 1 boinc boinc         0 Nov 28 18:19 boinc_lockfile
[2025-11-28 20:55:09] -rw-r--r-- 1 boinc boinc      2788 Nov 28 18:19 pandaJob.out
[2025-11-28 20:55:09] -rw------- 1 boinc boinc    991834 Nov 28 18:19 agis_schedconf.cvmfs.json
[2025-11-28 20:55:09] -rw------- 1 boinc boinc   1516240 Nov 28 18:19 agis_ddmendpoints.agis.ALL.json
[2025-11-28 20:55:09] drwx------ 5 boinc boinc      4096 Nov 28 18:19 pilot3
[2025-11-28 20:55:09] -rw-r--r-- 1 boinc boinc       531 Nov 28 20:51 boinc_task_state.xml
[2025-11-28 20:55:09] -rw------- 1 boinc boinc 921270753 Nov 28 20:54 HITS.47556161._007585.pool.root.1
[2025-11-28 20:55:09] -rw------- 1 boinc boinc      1025 Nov 28 20:54 memory_monitor_summary.json
[2025-11-28 20:55:09] -rw------- 1 boinc boinc        95 Nov 28 20:54 pilot_heartbeat.json
[2025-11-28 20:55:09] -rw------- 1 boinc boinc   1856206 Nov 28 20:54 log.47556161._007585.job.log.tgz.1
[2025-11-28 20:55:09] -rw------- 1 boinc boinc      8560 Nov 28 20:54 heartbeat.json
[2025-11-28 20:55:09] -rw-r--r-- 1 boinc boinc      8192 Nov 28 20:55 boinc_mmap_file
[2025-11-28 20:55:09] -rw-r--r-- 1 boinc boinc        28 Nov 28 20:55 wrapper_checkpoint.txt
[2025-11-28 20:55:09] -rw------- 1 boinc boinc      4748 Nov 28 20:55 pilotlog.txt
[2025-11-28 20:55:09] -rw------- 1 boinc boinc   1323319 Nov 28 20:55 log.47556161._007585.job.log.1
[2025-11-28 20:55:09] -rw------- 1 boinc boinc       353 Nov 28 20:55 output.list
[2025-11-28 20:55:09] -rw-r--r-- 1 boinc boinc       620 Nov 28 20:55 runtime_log
[2025-11-28 20:55:09] -rw------- 1 boinc boinc   3194880 Nov 28 20:55 result.tar.gz
[2025-11-28 20:55:09] -rw-r--r-- 1 boinc boinc      8782 Nov 28 20:55 runtime_log.err
[2025-11-28 20:55:09] -rw------- 1 boinc boinc       647 Nov 28 20:55 LISKDmRzfi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmmaNKDmWjtk6m.diag
[2025-11-28 20:55:09] -rw-r--r-- 1 boinc boinc     21375 Nov 28 20:55 stderr.txt
[2025-11-28 20:55:09] HITS file was successfully produced:
[2025-11-28 20:55:09] -rw------- 1 boinc boinc 921270753 Nov 28 20:54 shared/HITS.pool.root.1
[2025-11-28 20:55:09]  *** Contents of shared directory: ***
[2025-11-28 20:55:09] total 1304088
[2025-11-28 20:55:09] -rw-r--r-- 2 boinc boinc     15847 Nov 28 18:19 start_atlas.sh
[2025-11-28 20:55:09] -rw-r--r-- 2 boinc boinc    590110 Nov 28 18:19 input.tar.gz
[2025-11-28 20:55:09] -rw-r--r-- 2 boinc boinc 410296585 Nov 28 18:19 ATLAS.root_0
[2025-11-28 20:55:09] -rw------- 1 boinc boinc 921270753 Nov 28 20:54 HITS.pool.root.1
[2025-11-28 20:55:09] -rw------- 1 boinc boinc   3194880 Nov 28 20:55 result.tar.gz
20:55:10 (7091): run_atlas exited; CPU time 107888.784839
20:55:10 (7091): called boinc_finish(0)

</stderr_txt>
]]>

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