Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
00:58:40 (2331000): wrapper (7.7.26015): starting
00:58:40 (2331000): wrapper: running run_atlas (--nthreads 4)
[2025-11-29 00:58:40] Arguments: --nthreads 4
[2025-11-29 00:58:40] Threads: 4
[2025-11-29 00:58:40] Checking for CVMFS
[2025-11-29 00:58:40] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-29 00:58:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-29 00:58:40] Running cvmfs_config stat atlas.cern.ch
[2025-11-29 00:58:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-29 00:58:40] 2.13.2.0 621261 14909 69432 153424 0 81 3760974 4096000 0 130560 0 4494451 99.819 1189272 2021 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
[2025-11-29 00:58:40] CVMFS is ok
[2025-11-29 00:58:40] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-29 00:58:40] Small home clusters do not require a local http proxy but it is suggested if
[2025-11-29 00:58:40] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-11-29 00:58:40] Further information can be found at the LHC@home message board.
[2025-11-29 00:58:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-29 00:58:40] Checking for apptainer binary...
[2025-11-29 00:58:40] apptainer is not installed, using version from CVMFS
[2025-11-29 00:58:40] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-29 00:58:41] localhost
[2025-11-29 00:58:41] apptainer works
[2025-11-29 00:58:41] Set ATHENA_PROC_NUMBER=4
[2025-11-29 00:58:41] Set ATHENA_CORE_NUMBER=4
[2025-11-29 00:58:41] Starting ATLAS job with PandaID=6899218529
[2025-11-29 00:58:41] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-29 16:37:53]  *** The last 200 lines of the pilot log: ***
[2025-11-29 16:37:53] 2025-11-29 16:37:18,195 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-29 16:37:53] 2025-11-29 16:37:18,446 | INFO     | PID=2334677 has CPU usage=13.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-29 16:37:53] 2025-11-29 16:37:19,447 | INFO     | time since job start (56306s) is within the limit (172800.0s)
[2025-11-29 16:37:53] 2025-11-29 16:37:20,367 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-29 16:37:53] 2025-11-29 16:37:20,368 | INFO     | found 4 cores (4 cores per socket, 1 socket) , CPU MHz: 1999.999
[2025-11-29 16:37:53] 2025-11-29 16:37:20,369 | INFO     | using path: /var/lib/boinc/slots/3/PanDA_Pilot-6899218529/memory_monitor_summary.json (trf name=prmon)
[2025-11-29 16:37:53] 2025-11-29 16:37:20,369 | INFO     | extracted standard info from prmon json
[2025-11-29 16:37:53] 2025-11-29 16:37:20,369 | INFO     | extracted standard memory fields from prmon json
[2025-11-29 16:37:53] 2025-11-29 16:37:20,369 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-29 16:37:53] 2025-11-29 16:37:20,378 | INFO     | fitting pss+swap vs Time
[2025-11-29 16:37:53] 2025-11-29 16:37:20,379 | INFO     | sum of square deviations: 243827686102.0
[2025-11-29 16:37:53] 2025-11-29 16:37:20,397 | INFO     | sum of deviations: 580887060212.0
[2025-11-29 16:37:53] 2025-11-29 16:37:20,397 | INFO     | mean x: 1764406077.0
[2025-11-29 16:37:53] 2025-11-29 16:37:20,397 | INFO     | mean y: 2301130.066088841
[2025-11-29 16:37:53] 2025-11-29 16:37:20,397 | INFO     | intersect: -4201161878.8883767
[2025-11-29 16:37:53] 2025-11-29 16:37:20,397 | INFO     | chi2: 3.587989425077793
[2025-11-29 16:37:53] 2025-11-29 16:37:20,398 | INFO     | sum of square deviations: 239886579649.5
[2025-11-29 16:37:53] 2025-11-29 16:37:20,415 | INFO     | sum of deviations: 761993816875.9998
[2025-11-29 16:37:53] 2025-11-29 16:37:20,416 | INFO     | mean x: 1764405924.5
[2025-11-29 16:37:53] 2025-11-29 16:37:20,416 | INFO     | mean y: 2308128.594771242
[2025-11-29 16:37:53] 2025-11-29 16:37:20,416 | INFO     | intersect: -5602283870.227303
[2025-11-29 16:37:53] 2025-11-29 16:37:20,416 | INFO     | chi2: 1.5957530500046093
[2025-11-29 16:37:53] 2025-11-29 16:37:20,416 | INFO     | current chi2=1.5957530500046093 (change=55.52514623227991 %)
[2025-11-29 16:37:53] 2025-11-29 16:37:20,417 | INFO     | sum of square deviations: 235988171672.0
[2025-11-29 16:37:53] 2025-11-29 16:37:20,435 | INFO     | sum of deviations: 755677014213.9996
[2025-11-29 16:37:53] 2025-11-29 16:37:20,435 | INFO     | mean x: 1764405772.0
[2025-11-29 16:37:53] 2025-11-29 16:37:20,435 | INFO     | mean y: 2307881.481927711
[2025-11-29 16:37:53] 2025-11-29 16:37:20,435 | INFO     | intersect: -5647640063.790896
[2025-11-29 16:37:53] 2025-11-29 16:37:20,436 | INFO     | chi2: 1.5945672469172945
[2025-11-29 16:37:53] 2025-11-29 16:37:20,436 | INFO     | current chi2=1.5945672469172945 (change=0.07430993707400012 %)
[2025-11-29 16:37:53] 2025-11-29 16:37:20,436 | INFO     | right removable region: 912
[2025-11-29 16:37:53] 2025-11-29 16:37:20,436 | INFO     | sum of square deviations: 239886579649.5
[2025-11-29 16:37:53] 2025-11-29 16:37:20,453 | INFO     | sum of deviations: 444941191564.50006
[2025-11-29 16:37:53] 2025-11-29 16:37:20,453 | INFO     | mean x: 1764406229.5
[2025-11-29 16:37:53] 2025-11-29 16:37:20,453 | INFO     | mean y: 2306377.234204793
[2025-11-29 16:37:53] 2025-11-29 16:37:20,453 | INFO     | intersect: -3270311087.671957
[2025-11-29 16:37:53] 2025-11-29 16:37:20,454 | INFO     | chi2: 2.1072532072467904
[2025-11-29 16:37:53] 2025-11-29 16:37:20,454 | INFO     | current chi2=2.1072532072467904 (change=41.26924699057322 %)
[2025-11-29 16:37:53] 2025-11-29 16:37:20,455 | INFO     | sum of square deviations: 235988171672.0
[2025-11-29 16:37:53] 2025-11-29 16:37:20,472 | INFO     | sum of deviations: 438209890089.99994
[2025-11-29 16:37:53] 2025-11-29 16:37:20,472 | INFO     | mean x: 1764406382.0
[2025-11-29 16:37:53] 2025-11-29 16:37:20,472 | INFO     | mean y: 2306640.239868565
[2025-11-29 16:37:53] 2025-11-29 16:37:20,472 | INFO     | intersect: -3274045395.7636895
[2025-11-29 16:37:53] 2025-11-29 16:37:20,472 | INFO     | chi2: 2.1068133998711396
[2025-11-29 16:37:53] 2025-11-29 16:37:20,473 | INFO     | current chi2=2.1068133998711396 (change=0.02087112142662171 %)
[2025-11-29 16:37:53] 2025-11-29 16:37:20,473 | INFO     | left removable region: 20
[2025-11-29 16:37:53] 2025-11-29 16:37:20,473 | INFO     | sum of square deviations: 220075877043.0
[2025-11-29 16:37:53] 2025-11-29 16:37:20,489 | INFO     | sum of deviations: 588138623671.5001
[2025-11-29 16:37:53] 2025-11-29 16:37:20,489 | INFO     | mean x: 1764406351.5
[2025-11-29 16:37:53] 2025-11-29 16:37:20,489 | INFO     | mean y: 2314440.5683856504
[2025-11-29 16:37:53] 2025-11-29 16:37:20,489 | INFO     | intersect: -4712948027.592569
[2025-11-29 16:37:53] 2025-11-29 16:37:20,490 | INFO     | chi2: 0.08580967814864977
[2025-11-29 16:37:53] 2025-11-29 16:37:20,490 | INFO     | current memory leak: 2.67 B/s (using 892 data points, chi2=0.09)
[2025-11-29 16:37:53] 2025-11-29 16:37:20,490 | INFO     | could have reported an average CPU frequency of 1999 MHz (34 samples)
[2025-11-29 16:37:53] 2025-11-29 16:37:20,490 | INFO     | ..............................
[2025-11-29 16:37:53] 2025-11-29 16:37:20,490 | INFO     | . Timing measurements:
[2025-11-29 16:37:53] 2025-11-29 16:37:20,490 | INFO     | . get job = 0 s
[2025-11-29 16:37:53] 2025-11-29 16:37:20,491 | INFO     | . initial setup = 5 s
[2025-11-29 16:37:53] 2025-11-29 16:37:20,491 | INFO     | . payload setup = 4 s
[2025-11-29 16:37:53] 2025-11-29 16:37:20,491 | INFO     | . stage-in = 0 s
[2025-11-29 16:37:53] 2025-11-29 16:37:20,491 | INFO     | . payload execution = 56268 s
[2025-11-29 16:37:53] 2025-11-29 16:37:20,491 | INFO     | . stage-out = 7 s
[2025-11-29 16:37:53] 2025-11-29 16:37:20,491 | INFO     | . log creation = 0 s
[2025-11-29 16:37:53] 2025-11-29 16:37:20,491 | INFO     | ..............................
[2025-11-29 16:37:53] 2025-11-29 16:37:20,899 | INFO     | 
[2025-11-29 16:37:53] 2025-11-29 16:37:20,900 | INFO     | job summary report
[2025-11-29 16:37:53] 2025-11-29 16:37:20,900 | INFO     | --------------------------------------------------
[2025-11-29 16:37:53] 2025-11-29 16:37:20,900 | INFO     | PanDA job id: 6899218529
[2025-11-29 16:37:53] 2025-11-29 16:37:20,900 | INFO     | task id: 47556161
[2025-11-29 16:37:53] 2025-11-29 16:37:20,900 | INFO     | errors: (none)
[2025-11-29 16:37:53] 2025-11-29 16:37:20,900 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-29 16:37:53] 2025-11-29 16:37:20,900 | INFO     | pilot state: finished 
[2025-11-29 16:37:53] 2025-11-29 16:37:20,900 | INFO     | transexitcode: 0
[2025-11-29 16:37:53] 2025-11-29 16:37:20,900 | INFO     | exeerrorcode: 0
[2025-11-29 16:37:53] 2025-11-29 16:37:20,900 | INFO     | exeerrordiag: 
[2025-11-29 16:37:53] 2025-11-29 16:37:20,900 | INFO     | exitcode: 0
[2025-11-29 16:37:53] 2025-11-29 16:37:20,900 | INFO     | exitmsg: OK
[2025-11-29 16:37:53] 2025-11-29 16:37:20,900 | INFO     | cpuconsumptiontime: 221905 s
[2025-11-29 16:37:53] 2025-11-29 16:37:20,900 | INFO     | nevents: 1000
[2025-11-29 16:37:53] 2025-11-29 16:37:20,901 | INFO     | neventsw: 0
[2025-11-29 16:37:53] 2025-11-29 16:37:20,901 | INFO     | pid: 2341057
[2025-11-29 16:37:53] 2025-11-29 16:37:20,901 | INFO     | pgrp: 2341057
[2025-11-29 16:37:53] 2025-11-29 16:37:20,901 | INFO     | corecount: 4
[2025-11-29 16:37:53] 2025-11-29 16:37:20,901 | INFO     | event service: False
[2025-11-29 16:37:53] 2025-11-29 16:37:20,901 | INFO     | sizes: {0: 2284317, 3: 2284579, 11: 2284607, 56276: 2336332, 56284: 2345326, 56285: 2345382, 56293: 2345756}
[2025-11-29 16:37:53] 2025-11-29 16:37:20,901 | INFO     | --------------------------------------------------
[2025-11-29 16:37:53] 2025-11-29 16:37:20,901 | INFO     | 
[2025-11-29 16:37:53] 2025-11-29 16:37:20,901 | INFO     | executing command: ls -lF /var/lib/boinc/slots/3
[2025-11-29 16:37:53] 2025-11-29 16:37:20,922 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-29 16:37:53] 2025-11-29 16:37:20,922 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-29 16:37:53] 2025-11-29 16:37:20,922 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-29 16:37:53] 2025-11-29 16:37:20,922 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-29 16:37:53] 2025-11-29 16:37:20,922 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-29 16:37:53] 2025-11-29 16:37:20,922 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-29 16:37:53] 2025-11-29 16:37:20,922 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-29 16:37:53] 2025-11-29 16:37:20,922 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-29 16:37:53] 2025-11-29 16:37:20,922 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-29 16:37:53] 2025-11-29 16:37:20,923 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-29 16:37:53] 2025-11-29 16:37:20,923 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-29 16:37:53] 2025-11-29 16:37:20,923 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-29 16:37:53] 2025-11-29 16:37:20,923 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-29 16:37:53] 2025-11-29 16:37:20,923 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-29 16:37:53] 2025-11-29 16:37:20,923 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-29 16:37:53] 2025-11-29 16:37:20,923 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-29 16:37:53] 2025-11-29 16:37:20,923 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-29 16:37:53] 2025-11-29 16:37:20,923 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-29 16:37:53] 2025-11-29 16:37:20,923 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-29 16:37:53] 2025-11-29 16:37:20,923 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-29 16:37:53] 2025-11-29 16:37:20,923 | INFO     | job 6899218529 has completed (purged errors)
[2025-11-29 16:37:53] 2025-11-29 16:37:20,923 | INFO     | overall cleanup function is called
[2025-11-29 16:37:53] 2025-11-29 16:37:21,936 | INFO     | --- collectZombieJob: --- 10, [2341057]
[2025-11-29 16:37:53] 2025-11-29 16:37:21,936 | INFO     | zombie collector waiting for pid 2341057
[2025-11-29 16:37:53] 2025-11-29 16:37:21,936 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-29 16:37:53] 2025-11-29 16:37:21,936 | INFO     | collected zombie processes
[2025-11-29 16:37:53] 2025-11-29 16:37:21,936 | INFO     | will attempt to kill all subprocesses of pid=2341057
[2025-11-29 16:37:53] 2025-11-29 16:37:21,977 | INFO     | process IDs to be killed: [2341057] (in reverse order)
[2025-11-29 16:37:53] 2025-11-29 16:37:22,006 | WARNING  | found no corresponding commands to process id(s)
[2025-11-29 16:37:53] 2025-11-29 16:37:22,007 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-29 16:37:53] 2025-11-29 16:37:22,008 | INFO     | did not find any defunct processes belonging to 2341057
[2025-11-29 16:37:53] 2025-11-29 16:37:22,008 | INFO     | did not find any defunct processes belonging to 2341057
[2025-11-29 16:37:53] 2025-11-29 16:37:22,010 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-29 16:37:53] 2025-11-29 16:37:22,010 | INFO     | ready for new job
[2025-11-29 16:37:53] 2025-11-29 16:37:22,010 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-29 16:37:53] 2025-11-29 16:37:22,015 | INFO     | ***************************************
[2025-11-29 16:37:53] 2025-11-29 16:37:22,015 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-29 16:37:53] 2025-11-29 16:37:22,015 | INFO     | ***************************************
[2025-11-29 16:37:53] 2025-11-29 16:37:22,016 | INFO     | 
[2025-11-29 16:37:53] 2025-11-29 16:37:22,016 | INFO     | pilot is running in a VM
[2025-11-29 16:37:53] 2025-11-29 16:37:22,016 | INFO     | architecture information:
[2025-11-29 16:37:53] 2025-11-29 16:37:22,016 | INFO     | executing command: cat /etc/os-release
[2025-11-29 16:37:53] 2025-11-29 16:37:22,027 | INFO     | cat /etc/os-release:
[2025-11-29 16:37:53] NAME="CentOS Linux"
[2025-11-29 16:37:53] VERSION="7 (Core)"
[2025-11-29 16:37:53] ID="centos"
[2025-11-29 16:37:53] ID_LIKE="rhel fedora"
[2025-11-29 16:37:53] VERSION_ID="7"
[2025-11-29 16:37:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-29 16:37:53] ANSI_COLOR="0;31"
[2025-11-29 16:37:53] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-29 16:37:53] HOME_URL="https://www.centos.org/"
[2025-11-29 16:37:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-29 16:37:53] 
[2025-11-29 16:37:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-29 16:37:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-29 16:37:53] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-29 16:37:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-29 16:37:53] 
[2025-11-29 16:37:53] 2025-11-29 16:37:22,027 | INFO     | ***************************************
[2025-11-29 16:37:53] 2025-11-29 16:37:22,531 | INFO     | executing command: df -mP /var/lib/boinc/slots/3
[2025-11-29 16:37:53] 2025-11-29 16:37:22,543 | INFO     | sufficient remaining disk space (147825098752 B)
[2025-11-29 16:37:53] 2025-11-29 16:37:22,543 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-29 16:37:53] 2025-11-29 16:37:22,543 | INFO     | current server update state: UPDATING_FINAL
[2025-11-29 16:37:53] 2025-11-29 16:37:22,543 | INFO     | update_server=False
[2025-11-29 16:37:53] 2025-11-29 16:37:22,543 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-29 16:37:53] 2025-11-29 16:37:22,544 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-29 16:37:53] 2025-11-29 16:37:22,544 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-29 16:37:53] 2025-11-29 16:37:22,544 | INFO     | aborting loop
[2025-11-29 16:37:53] 2025-11-29 16:37:23,000 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-29 16:37:53] 2025-11-29 16:37:23,043 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-29 16:37:53] 2025-11-29 16:37:23,346 | INFO     | all job control threads have been joined
[2025-11-29 16:37:53] 2025-11-29 16:37:23,440 | INFO     | all payload control threads have been joined
[2025-11-29 16:37:53] 2025-11-29 16:37:23,549 | INFO     | [job] retrieve thread has finished
[2025-11-29 16:37:53] 2025-11-29 16:37:23,550 | INFO     | [job] queue monitor thread has finished
[2025-11-29 16:37:53] 2025-11-29 16:37:23,550 | INFO     | [job] job monitor thread has finished
[2025-11-29 16:37:53] 2025-11-29 16:37:23,551 | INFO     | all data control threads have been joined
[2025-11-29 16:37:53] 2025-11-29 16:37:23,696 | INFO     | [payload] failed_post thread has finished
[2025-11-29 16:37:53] 2025-11-29 16:37:23,898 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-29 16:37:53] 2025-11-29 16:37:23,904 | INFO     | [data] copytool_in thread has finished
[2025-11-29 16:37:53] 2025-11-29 16:37:24,351 | INFO     | [job] control thread has finished
[2025-11-29 16:37:53] 2025-11-29 16:37:24,407 | INFO     | [job] create_data_payload thread has finished
[2025-11-29 16:37:53] 2025-11-29 16:37:24,445 | INFO     | [payload] control thread has finished
[2025-11-29 16:37:53] 2025-11-29 16:37:24,548 | INFO     | [job] validate thread has finished
[2025-11-29 16:37:53] 2025-11-29 16:37:24,556 | INFO     | [data] control thread has finished
[2025-11-29 16:37:53] 2025-11-29 16:37:24,624 | INFO     | [payload] execute_payloads thread has finished
[2025-11-29 16:37:53] 2025-11-29 16:37:24,721 | INFO     | [payload] validate_post thread has finished
[2025-11-29 16:37:53] 2025-11-29 16:37:24,810 | INFO     | [payload] validate_pre thread has finished
[2025-11-29 16:37:53] 2025-11-29 16:37:25,005 | INFO     | [data] copytool_out thread has finished
[2025-11-29 16:37:53] 2025-11-29 16:37:26,542 | INFO     | [monitor] cgroup control has ended
[2025-11-29 16:37:53] 2025-11-29 16:37:27,048 | INFO     | [data] queue_monitor thread has finished
[2025-11-29 16:37:53] 2025-11-29 16:37:28,370 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140619338995520)>', '<ExcThread(monitor, started 140618772772608)>']
[2025-11-29 16:37:53] 2025-11-29 16:37:33,387 | INFO     | all workflow threads have been joined
[2025-11-29 16:37:53] 2025-11-29 16:37:33,387 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-29 16:37:53] 2025-11-29 16:37:33,387 | INFO     | traces error code: 0
[2025-11-29 16:37:53] 2025-11-29 16:37:33,388 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-29 16:37:53] 2025-11-29 16:37:52,549 | INFO     | PID=2334677 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-29 16:37:53] 2025-11-29 16:37:52,549 | INFO     | found 0 job(s) in 20 queues
[2025-11-29 16:37:53] 2025-11-29 16:37:52,549 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-29 16:37:53] 2025-11-29 16:37:52,549 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-29 16:37:53] 2025-11-29 16:37:52,549 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-29 16:37:53] 2025-11-29 16:37:52,549 | INFO     | [monitor] control thread has ended
[2025-11-29 16:37:53] 2025-11-29 16:37:52,726 [wrapper] ==== pilot stdout END ====
[2025-11-29 16:37:53] 2025-11-29 16:37:52,728 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-29 16:37:53] 2025-11-29 16:37:52,731 [wrapper] pilotpid: 2334677
[2025-11-29 16:37:53] 2025-11-29 16:37:52,733 [wrapper] Pilot exit status: 0
[2025-11-29 16:37:53] 2025-11-29 16:37:52,745 [wrapper] pandaids: 6899218529
[2025-11-29 16:37:53] 2025-11-29 16:37:52,763 [wrapper] cleanup supervisor_pilot 2435771 2334678
[2025-11-29 16:37:53] 2025-11-29 16:37:52,765 [wrapper] Test setup, not cleaning
[2025-11-29 16:37:53] 2025-11-29 16:37:52,768 [wrapper] apfmon messages muted
[2025-11-29 16:37:53] 2025-11-29 16:37:52,769 [wrapper] ==== wrapper stdout END ====
[2025-11-29 16:37:53] 2025-11-29 16:37:52,771 [wrapper] ==== wrapper stderr END ====
[2025-11-29 16:37:53]  *** Error codes and diagnostics ***
[2025-11-29 16:37:53]     "exeErrorCode": 0,
[2025-11-29 16:37:53]     "exeErrorDiag": "",
[2025-11-29 16:37:53]     "pilotErrorCode": 0,
[2025-11-29 16:37:53]     "pilotErrorDiag": "",
[2025-11-29 16:37:53]  *** Listing of results directory ***
[2025-11-29 16:37:53] total 1305120
[2025-11-29 16:37:53] -rw-r--r-- 1 boinc boinc    576529 Nov 27 01:09 pilot3.tar.gz
[2025-11-29 16:37:53] -rw-r--r-- 1 boinc boinc      5112 Nov 27 01:25 queuedata.json
[2025-11-29 16:37:53] -rwx------ 1 boinc boinc     36292 Nov 27 01:25 runpilot2-wrapper.sh
[2025-11-29 16:37:53] -rw-r--r-- 1 boinc boinc       100 Nov 29 00:58 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-29 16:37:53] -rwxr-xr-x 1 boinc boinc      7986 Nov 29 00:58 run_atlas
[2025-11-29 16:37:53] -rw-r--r-- 1 boinc boinc       105 Nov 29 00:58 job.xml
[2025-11-29 16:37:53] -rw-r--r-- 2 boinc boinc 409658906 Nov 29 00:58 EVNT.47483658._002791.pool.root.1
[2025-11-29 16:37:53] drwxrwx--x 2 boinc boinc      4096 Nov 29 00:58 shared
[2025-11-29 16:37:53] -rw-r--r-- 2 boinc boinc    590110 Nov 29 00:58 input.tar.gz
[2025-11-29 16:37:53] -rw-r--r-- 2 boinc boinc     15847 Nov 29 00:58 start_atlas.sh
[2025-11-29 16:37:53] -rw-r--r-- 1 boinc boinc      5960 Nov 29 00:58 init_data.xml
[2025-11-29 16:37:53] -rw-r--r-- 1 boinc boinc         0 Nov 29 00:58 boinc_setup_complete
[2025-11-29 16:37:53] -rw-r--r-- 1 boinc boinc         0 Nov 29 00:58 boinc_lockfile
[2025-11-29 16:37:53] -rw-r--r-- 1 boinc boinc      2788 Nov 29 00:58 pandaJob.out
[2025-11-29 16:37:53] -rw------- 1 boinc boinc    991818 Nov 29 00:58 agis_schedconf.cvmfs.json
[2025-11-29 16:37:53] drwx------ 5 boinc boinc      4096 Nov 29 00:58 pilot3
[2025-11-29 16:37:53] -rw-r--r-- 1 boinc boinc       532 Nov 29 16:31 boinc_task_state.xml
[2025-11-29 16:37:53] -rw------- 1 boinc boinc 903880972 Nov 29 16:36 HITS.47556161._007733.pool.root.1
[2025-11-29 16:37:53] -rw------- 1 boinc boinc      1033 Nov 29 16:37 memory_monitor_summary.json
[2025-11-29 16:37:53] -rw------- 1 boinc boinc        95 Nov 29 16:37 pilot_heartbeat.json
[2025-11-29 16:37:53] -rw------- 1 boinc boinc   1516240 Nov 29 16:37 agis_ddmendpoints.agis.ALL.json
[2025-11-29 16:37:53] -rw------- 1 boinc boinc   1639495 Nov 29 16:37 log.47556161._007733.job.log.tgz.1
[2025-11-29 16:37:53] -rw------- 1 boinc boinc      8584 Nov 29 16:37 heartbeat.json
[2025-11-29 16:37:53] -rw-r--r-- 1 boinc boinc      8192 Nov 29 16:37 boinc_mmap_file
[2025-11-29 16:37:53] -rw-r--r-- 1 boinc boinc        29 Nov 29 16:37 wrapper_checkpoint.txt
[2025-11-29 16:37:53] -rw------- 1 boinc boinc       747 Nov 29 16:37 pilotlog.txt
[2025-11-29 16:37:53] -rw------- 1 boinc boinc   7850411 Nov 29 16:37 log.47556161._007733.job.log.1
[2025-11-29 16:37:53] -rw------- 1 boinc boinc       353 Nov 29 16:37 output.list
[2025-11-29 16:37:53] -rw-r--r-- 1 boinc boinc       620 Nov 29 16:37 runtime_log
[2025-11-29 16:37:53] -rw------- 1 boinc boinc   9512960 Nov 29 16:37 result.tar.gz
[2025-11-29 16:37:53] -rw-r--r-- 1 boinc boinc      8779 Nov 29 16:37 runtime_log.err
[2025-11-29 16:37:53] -rw------- 1 boinc boinc       658 Nov 29 16:37 HtLLDmLwfi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmlTNKDmu6ySBn.diag
[2025-11-29 16:37:53] -rw-r--r-- 1 boinc boinc     21422 Nov 29 16:37 stderr.txt
[2025-11-29 16:37:53] HITS file was successfully produced:
[2025-11-29 16:37:53] -rw------- 1 boinc boinc 903880972 Nov 29 16:36 shared/HITS.pool.root.1
[2025-11-29 16:37:53]  *** Contents of shared directory: ***
[2025-11-29 16:37:53] total 1292656
[2025-11-29 16:37:53] -rw-r--r-- 2 boinc boinc 409658906 Nov 29 00:58 ATLAS.root_0
[2025-11-29 16:37:53] -rw-r--r-- 2 boinc boinc    590110 Nov 29 00:58 input.tar.gz
[2025-11-29 16:37:53] -rw-r--r-- 2 boinc boinc     15847 Nov 29 00:58 start_atlas.sh
[2025-11-29 16:37:53] -rw------- 1 boinc boinc 903880972 Nov 29 16:36 HITS.pool.root.1
[2025-11-29 16:37:53] -rw------- 1 boinc boinc   9512960 Nov 29 16:37 result.tar.gz
16:37:54 (2331000): run_atlas exited; CPU time 221753.942299
16:37:54 (2331000): called boinc_finish(0)

</stderr_txt>
]]>

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