Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
00:24:59 (1149): wrapper (7.7.26015): starting
00:24:59 (1149): wrapper: running run_atlas (--nthreads 8)
[2025-11-28 00:24:59] Arguments: --nthreads 8
[2025-11-28 00:24:59] Threads: 8
[2025-11-28 00:24:59] Checking for CVMFS
[2025-11-28 00:24:59] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-28 00:24:59] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-28 00:24:59] Running cvmfs_config stat atlas.cern.ch
[2025-11-28 00:25:00] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-28 00:25:00] 2.11.2.0 2840 70092 79236 153399 3 80 14719161 20275200 1 130560 0 18563856 99.828 4631704 26985 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-28 00:25:00] CVMFS is ok
[2025-11-28 00:25:00] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-28 00:25:00] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-28 00:25:00] Further information can be found at the LHC@home message board.
[2025-11-28 00:25:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-28 00:25:00] Checking for apptainer binary...
[2025-11-28 00:25:00] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-28 00:25:00] Running /usr/bin/apptainer --version
[2025-11-28 00:25:00] apptainer version 1.3.2-1.el7
[2025-11-28 00:25:00] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-28 00:25:01] c-204-39.aglt2.org
[2025-11-28 00:25:01] apptainer works
[2025-11-28 00:25:01] Set ATHENA_PROC_NUMBER=8
[2025-11-28 00:25:01] Set ATHENA_CORE_NUMBER=8
[2025-11-28 00:25:01] Starting ATLAS job with PandaID=6892543858
[2025-11-28 00:25:01] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 12:45:46]  *** The last 200 lines of the pilot log: ***
[2025-11-28 12:45:46] 2025-11-28 17:45:10,978 | INFO     | time since job start (44392s) is within the limit (172800.0s)
[2025-11-28 12:45:46] 2025-11-28 17:45:12,984 | INFO     | time since job start (44394s) is within the limit (172800.0s)
[2025-11-28 12:45:46] 2025-11-28 17:45:13,240 | INFO     | monitor loop #3267: job 0:6892543858 is in state 'finished'
[2025-11-28 12:45:46] 2025-11-28 17:45:13,240 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 12:45:46] 2025-11-28 17:45:14,105 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-28 12:45:46] 2025-11-28 17:45:14,109 | INFO     | found 8 cores (4 cores per socket, 2 sockets) , CPU MHz: 1762.25
[2025-11-28 12:45:46] 2025-11-28 17:45:14,112 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6892543858/memory_monitor_summary.json (trf name=prmon)
[2025-11-28 12:45:46] 2025-11-28 17:45:14,113 | INFO     | extracted standard info from prmon json
[2025-11-28 12:45:46] 2025-11-28 17:45:14,113 | INFO     | extracted standard memory fields from prmon json
[2025-11-28 12:45:46] 2025-11-28 17:45:14,113 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-28 12:45:46] 2025-11-28 17:45:14,127 | INFO     | fitting pss+swap vs Time
[2025-11-28 12:45:46] 2025-11-28 17:45:14,128 | INFO     | sum of square deviations: 119638824013.80237
[2025-11-28 12:45:46] 2025-11-28 17:45:14,140 | INFO     | sum of deviations: 699235958631.1658
[2025-11-28 12:45:46] 2025-11-28 17:45:14,140 | INFO     | mean x: 1764329723.054945
[2025-11-28 12:45:46] 2025-11-28 17:45:14,140 | INFO     | mean y: 2862166.8708791207
[2025-11-28 12:45:46] 2025-11-28 17:45:14,140 | INFO     | intersect: -10308863942.20102
[2025-11-28 12:45:46] 2025-11-28 17:45:14,141 | INFO     | chi2: 6.728911723972904
[2025-11-28 12:45:46] 2025-11-28 17:45:14,142 | INFO     | sum of square deviations: 117190752492.25189
[2025-11-28 12:45:46] 2025-11-28 17:45:14,154 | INFO     | sum of deviations: 967089280231.8188
[2025-11-28 12:45:46] 2025-11-28 17:45:14,154 | INFO     | mean x: 1764329570.5587828
[2025-11-28 12:45:46] 2025-11-28 17:45:14,154 | INFO     | mean y: 2878853.8395573995
[2025-11-28 12:45:46] 2025-11-28 17:45:14,154 | INFO     | intersect: -14556838343.95058
[2025-11-28 12:45:46] 2025-11-28 17:45:14,155 | INFO     | chi2: 2.967443499820882
[2025-11-28 12:45:46] 2025-11-28 17:45:14,155 | INFO     | current chi2=2.967443499820882 (change=55.90009764507901 %)
[2025-11-28 12:45:46] 2025-11-28 17:45:14,156 | INFO     | sum of square deviations: 114776309508.17944
[2025-11-28 12:45:46] 2025-11-28 17:45:14,168 | INFO     | sum of deviations: 1047864419416.2722
[2025-11-28 12:45:46] 2025-11-28 17:45:14,168 | INFO     | mean x: 1764329418.062674
[2025-11-28 12:45:46] 2025-11-28 17:45:14,168 | INFO     | mean y: 2883947.3272980503
[2025-11-28 12:45:46] 2025-11-28 17:45:14,168 | INFO     | intersect: -16104778245.675531
[2025-11-28 12:45:46] 2025-11-28 17:45:14,169 | INFO     | chi2: 2.473553281950698
[2025-11-28 12:45:46] 2025-11-28 17:45:14,169 | INFO     | current chi2=2.473553281950698 (change=16.64362667393653 %)
[2025-11-28 12:45:46] 2025-11-28 17:45:14,169 | INFO     | right removable region: 717
[2025-11-28 12:45:46] 2025-11-28 17:45:14,170 | INFO     | sum of square deviations: 117190506052.25188
[2025-11-28 12:45:46] 2025-11-28 17:45:14,182 | INFO     | sum of deviations: 499489916644.16974
[2025-11-28 12:45:46] 2025-11-28 17:45:14,182 | INFO     | mean x: 1764329875.5587828
[2025-11-28 12:45:46] 2025-11-28 17:45:14,182 | INFO     | mean y: 2874586.784232365
[2025-11-28 12:45:46] 2025-11-28 17:45:14,182 | INFO     | intersect: -7517060364.966416
[2025-11-28 12:45:46] 2025-11-28 17:45:14,183 | INFO     | chi2: 4.413893236868334
[2025-11-28 12:45:46] 2025-11-28 17:45:14,183 | INFO     | current chi2=4.413893236868334 (change=34.404054950771894 %)
[2025-11-28 12:45:46] 2025-11-28 17:45:14,184 | INFO     | sum of square deviations: 114775860853.30356
[2025-11-28 12:45:46] 2025-11-28 17:45:14,195 | INFO     | sum of deviations: 457168478859.81067
[2025-11-28 12:45:46] 2025-11-28 17:45:14,195 | INFO     | mean x: 1764330028.0612814
[2025-11-28 12:45:46] 2025-11-28 17:45:14,195 | INFO     | mean y: 2877258.6406685235
[2025-11-28 12:45:46] 2025-11-28 17:45:14,196 | INFO     | intersect: -7024698654.437287
[2025-11-28 12:45:46] 2025-11-28 17:45:14,196 | INFO     | chi2: 4.369073326942389
[2025-11-28 12:45:46] 2025-11-28 17:45:14,196 | INFO     | current chi2=4.369073326942389 (change=1.015428047773638 %)
[2025-11-28 12:45:46] 2025-11-28 17:45:14,197 | INFO     | left removable region: 20
[2025-11-28 12:45:46] 2025-11-28 17:45:14,197 | INFO     | sum of square deviations: 104996855046.59106
[2025-11-28 12:45:46] 2025-11-28 17:45:14,208 | INFO     | sum of deviations: 755038931879.5181
[2025-11-28 12:45:46] 2025-11-28 17:45:14,208 | INFO     | mean x: 1764329997.5724533
[2025-11-28 12:45:46] 2025-11-28 17:45:14,208 | INFO     | mean y: 2902515.474892396
[2025-11-28 12:45:46] 2025-11-28 17:45:14,209 | INFO     | intersect: -12684504514.564037
[2025-11-28 12:45:46] 2025-11-28 17:45:14,209 | INFO     | chi2: 0.06881742366153265
[2025-11-28 12:45:46] 2025-11-28 17:45:14,210 | INFO     | current memory leak: 7.19 B/s (using 697 data points, chi2=0.07)
[2025-11-28 12:45:46] 2025-11-28 17:45:14,210 | INFO     | could have reported an average CPU frequency of 2179 MHz (28 samples)
[2025-11-28 12:45:46] 2025-11-28 17:45:14,210 | INFO     | ..............................
[2025-11-28 12:45:46] 2025-11-28 17:45:14,211 | INFO     | . Timing measurements:
[2025-11-28 12:45:46] 2025-11-28 17:45:14,211 | INFO     | . get job = 0 s
[2025-11-28 12:45:46] 2025-11-28 17:45:14,211 | INFO     | . initial setup = 2 s
[2025-11-28 12:45:46] 2025-11-28 17:45:14,211 | INFO     | . payload setup = 8 s
[2025-11-28 12:45:46] 2025-11-28 17:45:14,211 | INFO     | . stage-in = 0 s
[2025-11-28 12:45:46] 2025-11-28 17:45:14,211 | INFO     | . payload execution = 44356 s
[2025-11-28 12:45:46] 2025-11-28 17:45:14,211 | INFO     | . stage-out = 3 s
[2025-11-28 12:45:46] 2025-11-28 17:45:14,211 | INFO     | . log creation = 0 s
[2025-11-28 12:45:46] 2025-11-28 17:45:14,211 | INFO     | ..............................
[2025-11-28 12:45:46] 2025-11-28 17:45:14,308 | INFO     | 
[2025-11-28 12:45:46] 2025-11-28 17:45:14,308 | INFO     | job summary report
[2025-11-28 12:45:46] 2025-11-28 17:45:14,308 | INFO     | --------------------------------------------------
[2025-11-28 12:45:46] 2025-11-28 17:45:14,309 | INFO     | PanDA job id: 6892543858
[2025-11-28 12:45:46] 2025-11-28 17:45:14,309 | INFO     | task id: 47493029
[2025-11-28 12:45:46] 2025-11-28 17:45:14,309 | INFO     | errors: (none)
[2025-11-28 12:45:46] 2025-11-28 17:45:14,309 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-28 12:45:46] 2025-11-28 17:45:14,309 | INFO     | pilot state: finished 
[2025-11-28 12:45:46] 2025-11-28 17:45:14,310 | INFO     | transexitcode: 0
[2025-11-28 12:45:46] 2025-11-28 17:45:14,310 | INFO     | exeerrorcode: 0
[2025-11-28 12:45:46] 2025-11-28 17:45:14,310 | INFO     | exeerrordiag: 
[2025-11-28 12:45:46] 2025-11-28 17:45:14,310 | INFO     | exitcode: 0
[2025-11-28 12:45:46] 2025-11-28 17:45:14,310 | INFO     | exitmsg: OK
[2025-11-28 12:45:46] 2025-11-28 17:45:14,310 | INFO     | cpuconsumptiontime: 343489 s
[2025-11-28 12:45:46] 2025-11-28 17:45:14,311 | INFO     | nevents: 1000
[2025-11-28 12:45:46] 2025-11-28 17:45:14,311 | INFO     | neventsw: 0
[2025-11-28 12:45:46] 2025-11-28 17:45:14,311 | INFO     | pid: 11585
[2025-11-28 12:45:46] 2025-11-28 17:45:14,311 | INFO     | pgrp: 11585
[2025-11-28 12:45:46] 2025-11-28 17:45:14,311 | INFO     | corecount: 8
[2025-11-28 12:45:46] 2025-11-28 17:45:14,311 | INFO     | event service: False
[2025-11-28 12:45:46] 2025-11-28 17:45:14,312 | INFO     | sizes: {0: 2284304, 6: 2284566, 11: 2284594, 44369: 2330341, 44373: 2339419, 44379: 2339609}
[2025-11-28 12:45:46] 2025-11-28 17:45:14,312 | INFO     | --------------------------------------------------
[2025-11-28 12:45:46] 2025-11-28 17:45:14,312 | INFO     | 
[2025-11-28 12:45:46] 2025-11-28 17:45:14,312 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-28 12:45:46] 2025-11-28 17:45:14,342 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-28 12:45:46] 2025-11-28 17:45:14,343 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-28 12:45:46] 2025-11-28 17:45:14,343 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-28 12:45:46] 2025-11-28 17:45:14,343 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-28 12:45:46] 2025-11-28 17:45:14,343 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-28 12:45:46] 2025-11-28 17:45:14,343 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-28 12:45:46] 2025-11-28 17:45:14,344 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-28 12:45:46] 2025-11-28 17:45:14,344 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-28 12:45:46] 2025-11-28 17:45:14,344 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-28 12:45:46] 2025-11-28 17:45:14,344 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-28 12:45:46] 2025-11-28 17:45:14,344 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-28 12:45:46] 2025-11-28 17:45:14,345 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-28 12:45:46] 2025-11-28 17:45:14,345 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-28 12:45:46] 2025-11-28 17:45:14,345 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-28 12:45:46] 2025-11-28 17:45:14,345 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-28 12:45:46] 2025-11-28 17:45:14,345 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-28 12:45:46] 2025-11-28 17:45:14,345 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-28 12:45:46] 2025-11-28 17:45:14,346 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-28 12:45:46] 2025-11-28 17:45:14,346 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-28 12:45:46] 2025-11-28 17:45:14,346 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-28 12:45:46] 2025-11-28 17:45:14,346 | INFO     | job 6892543858 has completed (purged errors)
[2025-11-28 12:45:46] 2025-11-28 17:45:14,347 | INFO     | overall cleanup function is called
[2025-11-28 12:45:46] 2025-11-28 17:45:15,359 | INFO     | --- collectZombieJob: --- 10, [11585]
[2025-11-28 12:45:46] 2025-11-28 17:45:15,360 | INFO     | zombie collector waiting for pid 11585
[2025-11-28 12:45:46] 2025-11-28 17:45:15,361 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-28 12:45:46] 2025-11-28 17:45:15,361 | INFO     | collected zombie processes
[2025-11-28 12:45:46] 2025-11-28 17:45:15,361 | INFO     | will attempt to kill all subprocesses of pid=11585
[2025-11-28 12:45:46] 2025-11-28 17:45:15,454 | INFO     | process IDs to be killed: [11585] (in reverse order)
[2025-11-28 12:45:46] 2025-11-28 17:45:15,525 | WARNING  | found no corresponding commands to process id(s)
[2025-11-28 12:45:46] 2025-11-28 17:45:15,526 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-28 12:45:46] 2025-11-28 17:45:15,530 | INFO     | did not find any defunct processes belonging to 11585
[2025-11-28 12:45:46] 2025-11-28 17:45:15,534 | INFO     | did not find any defunct processes belonging to 11585
[2025-11-28 12:45:46] 2025-11-28 17:45:15,537 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 12:45:46] 2025-11-28 17:45:15,538 | INFO     | ready for new job
[2025-11-28 12:45:46] 2025-11-28 17:45:15,538 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 12:45:46] 2025-11-28 17:45:15,542 | INFO     | ***************************************
[2025-11-28 12:45:46] 2025-11-28 17:45:15,542 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 12:45:46] 2025-11-28 17:45:15,542 | INFO     | ***************************************
[2025-11-28 12:45:46] 2025-11-28 17:45:15,542 | INFO     | 
[2025-11-28 12:45:46] 2025-11-28 17:45:15,543 | INFO     | architecture information:
[2025-11-28 12:45:46] 2025-11-28 17:45:15,544 | INFO     | executing command: cat /etc/os-release
[2025-11-28 12:45:46] 2025-11-28 17:45:15,563 | INFO     | cat /etc/os-release:
[2025-11-28 12:45:46] NAME="CentOS Linux"
[2025-11-28 12:45:46] VERSION="7 (Core)"
[2025-11-28 12:45:46] ID="centos"
[2025-11-28 12:45:46] ID_LIKE="rhel fedora"
[2025-11-28 12:45:46] VERSION_ID="7"
[2025-11-28 12:45:46] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 12:45:46] ANSI_COLOR="0;31"
[2025-11-28 12:45:46] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 12:45:46] HOME_URL="https://www.centos.org/"
[2025-11-28 12:45:46] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 12:45:46] 
[2025-11-28 12:45:46] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 12:45:46] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 12:45:46] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 12:45:46] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 12:45:46] 
[2025-11-28 12:45:46] 2025-11-28 17:45:15,563 | INFO     | ***************************************
[2025-11-28 12:45:46] 2025-11-28 17:45:16,065 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-28 12:45:46] 2025-11-28 17:45:16,085 | INFO     | sufficient remaining disk space (17458790400 B)
[2025-11-28 12:45:46] 2025-11-28 17:45:16,085 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 12:45:46] 2025-11-28 17:45:16,086 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 12:45:46] 2025-11-28 17:45:16,086 | INFO     | update_server=False
[2025-11-28 12:45:46] 2025-11-28 17:45:16,086 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 12:45:46] 2025-11-28 17:45:16,086 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 12:45:46] 2025-11-28 17:45:16,087 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 12:45:46] 2025-11-28 17:45:16,491 | INFO     | all data control threads have been joined
[2025-11-28 12:45:46] 2025-11-28 17:45:16,499 | INFO     | all payload control threads have been joined
[2025-11-28 12:45:46] 2025-11-28 17:45:16,754 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 12:45:46] 2025-11-28 17:45:16,755 | INFO     | aborting loop
[2025-11-28 12:45:46] 2025-11-28 17:45:16,892 | INFO     | all job control threads have been joined
[2025-11-28 12:45:46] 2025-11-28 17:45:17,091 | INFO     | [job] queue monitor thread has finished
[2025-11-28 12:45:46] 2025-11-28 17:45:17,092 | INFO     | [job] retrieve thread has finished
[2025-11-28 12:45:46] 2025-11-28 17:45:17,252 | INFO     | [data] copytool_in thread has finished
[2025-11-28 12:45:46] 2025-11-28 17:45:17,330 | INFO     | [payload] failed_post thread has finished
[2025-11-28 12:45:46] 2025-11-28 17:45:17,431 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 12:45:46] 2025-11-28 17:45:17,493 | INFO     | [data] control thread has finished
[2025-11-28 12:45:46] 2025-11-28 17:45:17,504 | INFO     | [payload] control thread has finished
[2025-11-28 12:45:46] 2025-11-28 17:45:17,760 | INFO     | [job] job monitor thread has finished
[2025-11-28 12:45:46] 2025-11-28 17:45:17,837 | INFO     | [payload] validate_post thread has finished
[2025-11-28 12:45:46] 2025-11-28 17:45:17,871 | INFO     | [job] validate thread has finished
[2025-11-28 12:45:46] 2025-11-28 17:45:17,875 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 12:45:46] 2025-11-28 17:45:17,897 | INFO     | [job] control thread has finished
[2025-11-28 12:45:46] 2025-11-28 17:45:18,093 | INFO     | [data] copytool_out thread has finished
[2025-11-28 12:45:46] 2025-11-28 17:45:18,337 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 12:45:46] 2025-11-28 17:45:18,370 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 12:45:46] 2025-11-28 17:45:18,459 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 12:45:46] 2025-11-28 17:45:22,460 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 12:45:46] 2025-11-28 17:45:31,243 | INFO     | [monitor] cgroup control has ended
[2025-11-28 12:45:46] 2025-11-28 17:45:31,426 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139998673540928)>', '<ExcThread(monitor, started 139997856384768)>']
[2025-11-28 12:45:46] 2025-11-28 17:45:36,438 | INFO     | all workflow threads have been joined
[2025-11-28 12:45:46] 2025-11-28 17:45:36,438 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 12:45:46] 2025-11-28 17:45:36,439 | INFO     | traces error code: 0
[2025-11-28 12:45:46] 2025-11-28 17:45:36,439 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 12:45:46] 2025-11-28 17:45:46,189 | INFO     | PID=5128 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-28 12:45:46] 2025-11-28 17:45:46,189 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 12:45:46] 2025-11-28 17:45:46,189 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 12:45:46] 2025-11-28 17:45:46,189 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 12:45:46] 2025-11-28 17:45:46,190 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 12:45:46] 2025-11-28 17:45:46,190 | INFO     | [monitor] control thread has ended
[2025-11-28 12:45:46] 2025-11-28 17:45:46,303 [wrapper] ==== pilot stdout END ====
[2025-11-28 12:45:46] 2025-11-28 17:45:46,308 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 12:45:46] 2025-11-28 17:45:46,312 [wrapper] pilotpid: 5128
[2025-11-28 12:45:46] 2025-11-28 17:45:46,317 [wrapper] Pilot exit status: 0
[2025-11-28 12:45:46] 2025-11-28 17:45:46,334 [wrapper] pandaids: 6892543858
[2025-11-28 12:45:46] 2025-11-28 17:45:46,380 [wrapper] cleanup supervisor_pilot 32360 5129
[2025-11-28 12:45:46] 2025-11-28 17:45:46,385 [wrapper] Test setup, not cleaning
[2025-11-28 12:45:46] 2025-11-28 17:45:46,389 [wrapper] apfmon messages muted
[2025-11-28 12:45:46] 2025-11-28 17:45:46,394 [wrapper] ==== wrapper stdout END ====
[2025-11-28 12:45:46] 2025-11-28 17:45:46,399 [wrapper] ==== wrapper stderr END ====
[2025-11-28 12:45:46]  *** Error codes and diagnostics ***
[2025-11-28 12:45:46]     "exeErrorCode": 0,
[2025-11-28 12:45:46]     "exeErrorDiag": "",
[2025-11-28 12:45:46]     "pilotErrorCode": 0,
[2025-11-28 12:45:46]     "pilotErrorDiag": "",
[2025-11-28 12:45:46]  *** Listing of results directory ***
[2025-11-28 12:45:46] total 1296136
[2025-11-28 12:45:46] -rw-r--r-- 1 boincer umatlas    576529 Nov 19 02:46 pilot3.tar.gz
[2025-11-28 12:45:46] -rwx------ 1 boincer umatlas     36292 Nov 19 02:58 runpilot2-wrapper.sh
[2025-11-28 12:45:46] -rw-r--r-- 1 boincer umatlas      5112 Nov 19 02:58 queuedata.json
[2025-11-28 12:45:46] -rw-r--r-- 1 boincer umatlas       100 Nov 28 00:24 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 12:45:46] -rwxr-xr-x 1 boincer umatlas      7986 Nov 28 00:24 run_atlas
[2025-11-28 12:45:46] -rw-r--r-- 1 boincer umatlas       105 Nov 28 00:24 job.xml
[2025-11-28 12:45:46] -rw-r--r-- 2 boincer umatlas 408273066 Nov 28 00:24 EVNT.47493027._000264.pool.root.1
[2025-11-28 12:45:46] -rw-r--r-- 2 boincer umatlas     15120 Nov 28 00:24 start_atlas.sh
[2025-11-28 12:45:46] drwxrwx--x 2 boincer umatlas      4096 Nov 28 00:24 shared
[2025-11-28 12:45:46] -rw-r--r-- 2 boincer umatlas    590098 Nov 28 00:24 input.tar.gz
[2025-11-28 12:45:46] -rw-r--r-- 1 boincer umatlas         0 Nov 28 00:24 boinc_lockfile
[2025-11-28 12:45:46] -rw-r--r-- 1 boincer umatlas      2773 Nov 28 00:25 pandaJob.out
[2025-11-28 12:45:46] -rw------- 1 boincer umatlas    991858 Nov 28 00:25 agis_schedconf.cvmfs.json
[2025-11-28 12:45:46] drwx------ 5 boincer umatlas      4096 Nov 28 00:25 pilot3
[2025-11-28 12:45:46] -rw-r--r-- 1 boincer umatlas       532 Nov 28 12:35 boinc_task_state.xml
[2025-11-28 12:45:46] -rw-r--r-- 1 boincer umatlas      5913 Nov 28 12:39 init_data.xml
[2025-11-28 12:45:46] -rw------- 1 boincer umatlas 898877083 Nov 28 12:44 HITS.47493029._002597.pool.root.1
[2025-11-28 12:45:46] -rw------- 1 boincer umatlas      1062 Nov 28 12:45 memory_monitor_summary.json
[2025-11-28 12:45:46] -rw------- 1 boincer umatlas   1516240 Nov 28 12:45 agis_ddmendpoints.agis.ALL.json
[2025-11-28 12:45:46] -rw------- 1 boincer umatlas   1974403 Nov 28 12:45 log.47493029._002597.job.log.tgz.1
[2025-11-28 12:45:46] -rw------- 1 boincer umatlas        95 Nov 28 12:45 pilot_heartbeat.json
[2025-11-28 12:45:46] -rw------- 1 boincer umatlas      8659 Nov 28 12:45 heartbeat.json
[2025-11-28 12:45:46] -rw-r--r-- 1 boincer umatlas      8192 Nov 28 12:45 boinc_mmap_file
[2025-11-28 12:45:46] -rw-r--r-- 1 boincer umatlas        29 Nov 28 12:45 wrapper_checkpoint.txt
[2025-11-28 12:45:46] -rw------- 1 boincer umatlas       744 Nov 28 12:45 pilotlog.txt
[2025-11-28 12:45:46] -rw------- 1 boincer umatlas   6115326 Nov 28 12:45 log.47493029._002597.job.log.1
[2025-11-28 12:45:46] -rw------- 1 boincer umatlas       353 Nov 28 12:45 output.list
[2025-11-28 12:45:46] -rw-r--r-- 1 boincer umatlas       620 Nov 28 12:45 runtime_log
[2025-11-28 12:45:46] -rw------- 1 boincer umatlas   8110080 Nov 28 12:45 result.tar.gz
[2025-11-28 12:45:46] -rw------- 1 boincer umatlas       668 Nov 28 12:45 uICMDmaGsf8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmc3FKDmlR4OUn.diag
[2025-11-28 12:45:46] -rw-r--r-- 1 boincer umatlas      8704 Nov 28 12:45 runtime_log.err
[2025-11-28 12:45:46] -rw-r--r-- 1 boincer umatlas     21281 Nov 28 12:45 stderr.txt
[2025-11-28 12:45:46] HITS file was successfully produced:
[2025-11-28 12:45:46] -rw------- 1 boincer umatlas 898877083 Nov 28 12:44 shared/HITS.pool.root.1
[2025-11-28 12:45:46]  *** Contents of shared directory: ***
[2025-11-28 12:45:46] total 1285040
[2025-11-28 12:45:46] -rw-r--r-- 2 boincer umatlas 408273066 Nov 28 00:24 ATLAS.root_0
[2025-11-28 12:45:46] -rw-r--r-- 2 boincer umatlas     15120 Nov 28 00:24 start_atlas.sh
[2025-11-28 12:45:46] -rw-r--r-- 2 boincer umatlas    590098 Nov 28 00:24 input.tar.gz
[2025-11-28 12:45:46] -rw------- 1 boincer umatlas 898877083 Nov 28 12:44 HITS.pool.root.1
[2025-11-28 12:45:46] -rw------- 1 boincer umatlas   8110080 Nov 28 12:45 result.tar.gz
12:45:48 (1149): run_atlas exited; CPU time 339657.507640
12:45:48 (1149): called boinc_finish(0)

</stderr_txt>
]]>

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