Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
21:14:38 (19768): wrapper (7.7.26015): starting
21:14:38 (19768): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 21:14:38] Arguments: --nthreads 8
[2025-11-27 21:14:38] Threads: 8
[2025-11-27 21:14:38] Checking for CVMFS
[2025-11-27 21:14:38] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 21:14:38] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 21:14:38] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 21:14:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 21:14:38] 2.11.2.0 6491 11213 74376 153392 1 82 12328350 18432001 1885 130560 0 9910583 99.992 416736 19946 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-27 21:14:38] CVMFS is ok
[2025-11-27 21:14:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 21:14:38] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 21:14:38] Further information can be found at the LHC@home message board.
[2025-11-27 21:14:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 21:14:38] Checking for apptainer binary...
[2025-11-27 21:14:38] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 21:14:38] Running /usr/bin/apptainer --version
[2025-11-27 21:14:38] apptainer version 1.3.2-1.el7
[2025-11-27 21:14:38] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 21:14:39] c-206-29.aglt2.org
[2025-11-27 21:14:39] apptainer works
[2025-11-27 21:14:39] Set ATHENA_PROC_NUMBER=8
[2025-11-27 21:14:39] Set ATHENA_CORE_NUMBER=8
[2025-11-27 21:14:39] Starting ATLAS job with PandaID=6898214380
[2025-11-27 21:14:39] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 17:10:16]  *** The last 200 lines of the pilot log: ***
[2025-11-28 17:10:16] 2025-11-28 22:09:43,653 | INFO     | sum of deviations: 2377200012369.2407
[2025-11-28 17:10:16] 2025-11-28 22:09:43,654 | INFO     | mean x: 1764331924.6306384
[2025-11-28 17:10:16] 2025-11-28 22:09:43,654 | INFO     | mean y: 2873317.454468085
[2025-11-28 17:10:16] 2025-11-28 22:09:43,654 | INFO     | intersect: -8334982104.071249
[2025-11-28 17:10:16] 2025-11-28 22:09:43,656 | INFO     | chi2: 5.89652285561654
[2025-11-28 17:10:16] 2025-11-28 22:09:43,658 | INFO     | sum of square deviations: 496633299501.2
[2025-11-28 17:10:16] 2025-11-28 22:09:43,715 | INFO     | sum of deviations: 2715288620262.7324
[2025-11-28 17:10:16] 2025-11-28 22:09:43,715 | INFO     | mean x: 1764331772.1333334
[2025-11-28 17:10:16] 2025-11-28 22:09:43,715 | INFO     | mean y: 2881378.552991453
[2025-11-28 17:10:16] 2025-11-28 22:09:43,716 | INFO     | intersect: -9643410942.266396
[2025-11-28 17:10:16] 2025-11-28 22:09:43,718 | INFO     | chi2: 3.4799315718869686
[2025-11-28 17:10:16] 2025-11-28 22:09:43,718 | INFO     | current chi2=3.4799315718869686 (change=40.98332768146106 %)
[2025-11-28 17:10:16] 2025-11-28 22:09:43,720 | INFO     | sum of square deviations: 490293601981.68567
[2025-11-28 17:10:16] 2025-11-28 22:09:43,768 | INFO     | sum of deviations: 2912414911883.107
[2025-11-28 17:10:16] 2025-11-28 22:09:43,768 | INFO     | mean x: 1764331619.6360514
[2025-11-28 17:10:16] 2025-11-28 22:09:43,769 | INFO     | mean y: 2886119.7879828326
[2025-11-28 17:10:16] 2025-11-28 22:09:43,769 | INFO     | intersect: -10477498893.938652
[2025-11-28 17:10:16] 2025-11-28 22:09:43,771 | INFO     | chi2: 2.574109245638992
[2025-11-28 17:10:16] 2025-11-28 22:09:43,771 | INFO     | current chi2=2.574109245638992 (change=26.029889023271824 %)
[2025-11-28 17:10:16] 2025-11-28 22:09:43,773 | INFO     | sum of square deviations: 484007949761.2061
[2025-11-28 17:10:16] 2025-11-28 22:09:43,820 | INFO     | sum of deviations: 2932966616372.07
[2025-11-28 17:10:16] 2025-11-28 22:09:43,821 | INFO     | mean x: 1764331467.137069
[2025-11-28 17:10:16] 2025-11-28 22:09:43,821 | INFO     | mean y: 2886615.6913793106
[2025-11-28 17:10:16] 2025-11-28 22:09:43,821 | INFO     | intersect: -10688518961.181522
[2025-11-28 17:10:16] 2025-11-28 22:09:43,823 | INFO     | chi2: 2.479706232370221
[2025-11-28 17:10:16] 2025-11-28 22:09:43,823 | INFO     | current chi2=2.479706232370221 (change=3.6674050811443455 %)
[2025-11-28 17:10:16] 2025-11-28 22:09:43,824 | INFO     | right removable region: 1159
[2025-11-28 17:10:16] 2025-11-28 22:09:43,825 | INFO     | sum of square deviations: 496632918922.4645
[2025-11-28 17:10:16] 2025-11-28 22:09:43,874 | INFO     | sum of deviations: 2060390915866.479
[2025-11-28 17:10:16] 2025-11-28 22:09:43,875 | INFO     | mean x: 1764332077.1324787
[2025-11-28 17:10:16] 2025-11-28 22:09:43,875 | INFO     | mean y: 2880865.345299145
[2025-11-28 17:10:16] 2025-11-28 22:09:43,875 | INFO     | intersect: -7316838882.960659
[2025-11-28 17:10:16] 2025-11-28 22:09:43,877 | INFO     | chi2: 3.7703156512512503
[2025-11-28 17:10:16] 2025-11-28 22:09:43,878 | INFO     | current chi2=3.7703156512512503 (change=36.058661289509644 %)
[2025-11-28 17:10:16] 2025-11-28 22:09:43,879 | INFO     | sum of square deviations: 490293055301.0184
[2025-11-28 17:10:16] 2025-11-28 22:09:43,911 | INFO     | sum of deviations: 1965897845085.4973
[2025-11-28 17:10:16] 2025-11-28 22:09:43,912 | INFO     | mean x: 1764332229.6317596
[2025-11-28 17:10:16] 2025-11-28 22:09:43,912 | INFO     | mean y: 2883137.889270386
[2025-11-28 17:10:16] 2025-11-28 22:09:43,912 | INFO     | intersect: -7071451060.294431
[2025-11-28 17:10:16] 2025-11-28 22:09:43,913 | INFO     | chi2: 3.678974623070033
[2025-11-28 17:10:16] 2025-11-28 22:09:43,913 | INFO     | current chi2=3.678974623070033 (change=2.4226361034494293 %)
[2025-11-28 17:10:16] 2025-11-28 22:09:43,914 | INFO     | left removable region: 20
[2025-11-28 17:10:16] 2025-11-28 22:09:43,915 | INFO     | sum of square deviations: 458194180632.9712
[2025-11-28 17:10:16] 2025-11-28 22:09:43,939 | INFO     | sum of deviations: 2384885064890.5894
[2025-11-28 17:10:16] 2025-11-28 22:09:43,939 | INFO     | mean x: 1764332046.6382792
[2025-11-28 17:10:16] 2025-11-28 22:09:43,939 | INFO     | mean y: 2899889.7295873575
[2025-11-28 17:10:16] 2025-11-28 22:09:43,940 | INFO     | intersect: -9180388168.889406
[2025-11-28 17:10:16] 2025-11-28 22:09:43,941 | INFO     | chi2: 0.2020471415976474
[2025-11-28 17:10:16] 2025-11-28 22:09:43,942 | INFO     | current memory leak: 5.20 B/s (using 1139 data points, chi2=0.20)
[2025-11-28 17:10:16] 2025-11-28 22:09:43,943 | INFO     | could have reported an average CPU frequency of 2635 MHz (42 samples)
[2025-11-28 17:10:16] 2025-11-28 22:09:43,944 | INFO     | ..............................
[2025-11-28 17:10:16] 2025-11-28 22:09:43,944 | INFO     | . Timing measurements:
[2025-11-28 17:10:16] 2025-11-28 22:09:43,944 | INFO     | . get job = 0 s
[2025-11-28 17:10:16] 2025-11-28 22:09:43,944 | INFO     | . initial setup = 2 s
[2025-11-28 17:10:16] 2025-11-28 22:09:43,944 | INFO     | . payload setup = 5 s
[2025-11-28 17:10:16] 2025-11-28 22:09:43,945 | INFO     | . stage-in = 0 s
[2025-11-28 17:10:16] 2025-11-28 22:09:43,945 | INFO     | . payload execution = 71656 s
[2025-11-28 17:10:16] 2025-11-28 22:09:43,945 | INFO     | . stage-out = 4 s
[2025-11-28 17:10:16] 2025-11-28 22:09:43,945 | INFO     | . log creation = 0 s
[2025-11-28 17:10:16] 2025-11-28 22:09:43,946 | INFO     | ..............................
[2025-11-28 17:10:16] 2025-11-28 22:09:44,033 | INFO     | 
[2025-11-28 17:10:16] 2025-11-28 22:09:44,034 | INFO     | job summary report
[2025-11-28 17:10:16] 2025-11-28 22:09:44,034 | INFO     | --------------------------------------------------
[2025-11-28 17:10:16] 2025-11-28 22:09:44,034 | INFO     | PanDA job id: 6898214380
[2025-11-28 17:10:16] 2025-11-28 22:09:44,034 | INFO     | task id: 47556161
[2025-11-28 17:10:16] 2025-11-28 22:09:44,034 | INFO     | errors: (none)
[2025-11-28 17:10:16] 2025-11-28 22:09:44,035 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-28 17:10:16] 2025-11-28 22:09:44,035 | INFO     | pilot state: finished 
[2025-11-28 17:10:16] 2025-11-28 22:09:44,035 | INFO     | transexitcode: 0
[2025-11-28 17:10:16] 2025-11-28 22:09:44,035 | INFO     | exeerrorcode: 0
[2025-11-28 17:10:16] 2025-11-28 22:09:44,036 | INFO     | exeerrordiag: 
[2025-11-28 17:10:16] 2025-11-28 22:09:44,036 | INFO     | exitcode: 0
[2025-11-28 17:10:16] 2025-11-28 22:09:44,036 | INFO     | exitmsg: OK
[2025-11-28 17:10:16] 2025-11-28 22:09:44,036 | INFO     | cpuconsumptiontime: 554665 s
[2025-11-28 17:10:16] 2025-11-28 22:09:44,036 | INFO     | nevents: 1000
[2025-11-28 17:10:16] 2025-11-28 22:09:44,037 | INFO     | neventsw: 0
[2025-11-28 17:10:16] 2025-11-28 22:09:44,038 | INFO     | pid: 30113
[2025-11-28 17:10:16] 2025-11-28 22:09:44,038 | INFO     | pgrp: 30113
[2025-11-28 17:10:16] 2025-11-28 22:09:44,038 | INFO     | corecount: 8
[2025-11-28 17:10:16] 2025-11-28 22:09:44,038 | INFO     | event service: False
[2025-11-28 17:10:16] 2025-11-28 22:09:44,038 | INFO     | sizes: {0: 2284093, 1: 2284292, 5: 2284554, 12: 2284610, 71664: 2341689, 71665: 2341688, 71670: 2350866, 71672: 2350922, 71677: 2351168}
[2025-11-28 17:10:16] 2025-11-28 22:09:44,038 | INFO     | --------------------------------------------------
[2025-11-28 17:10:16] 2025-11-28 22:09:44,039 | INFO     | 
[2025-11-28 17:10:16] 2025-11-28 22:09:44,039 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-28 17:10:16] 2025-11-28 22:09:44,068 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-28 17:10:16] 2025-11-28 22:09:44,068 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-28 17:10:16] 2025-11-28 22:09:44,068 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-28 17:10:16] 2025-11-28 22:09:44,069 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-28 17:10:16] 2025-11-28 22:09:44,069 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-28 17:10:16] 2025-11-28 22:09:44,069 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-28 17:10:16] 2025-11-28 22:09:44,069 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-28 17:10:16] 2025-11-28 22:09:44,069 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-28 17:10:16] 2025-11-28 22:09:44,069 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-28 17:10:16] 2025-11-28 22:09:44,070 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-28 17:10:16] 2025-11-28 22:09:44,070 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-28 17:10:16] 2025-11-28 22:09:44,070 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-28 17:10:16] 2025-11-28 22:09:44,070 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-28 17:10:16] 2025-11-28 22:09:44,070 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-28 17:10:16] 2025-11-28 22:09:44,071 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-28 17:10:16] 2025-11-28 22:09:44,071 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-28 17:10:16] 2025-11-28 22:09:44,071 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-28 17:10:16] 2025-11-28 22:09:44,071 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-28 17:10:16] 2025-11-28 22:09:44,071 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-28 17:10:16] 2025-11-28 22:09:44,071 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-28 17:10:16] 2025-11-28 22:09:44,072 | INFO     | job 6898214380 has completed (purged errors)
[2025-11-28 17:10:16] 2025-11-28 22:09:44,072 | INFO     | overall cleanup function is called
[2025-11-28 17:10:16] 2025-11-28 22:09:44,157 | INFO     | PID=23449 has CPU usage=18.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-28 17:10:16] 2025-11-28 22:09:44,157 | INFO     | .. there are 3 such processes running
[2025-11-28 17:10:16] 2025-11-28 22:09:45,093 | INFO     | --- collectZombieJob: --- 10, [30113]
[2025-11-28 17:10:16] 2025-11-28 22:09:45,094 | INFO     | zombie collector waiting for pid 30113
[2025-11-28 17:10:16] 2025-11-28 22:09:45,094 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-28 17:10:16] 2025-11-28 22:09:45,094 | INFO     | collected zombie processes
[2025-11-28 17:10:16] 2025-11-28 22:09:45,094 | INFO     | will attempt to kill all subprocesses of pid=30113
[2025-11-28 17:10:16] 2025-11-28 22:09:45,246 | INFO     | process IDs to be killed: [30113] (in reverse order)
[2025-11-28 17:10:16] 2025-11-28 22:09:45,305 | WARNING  | found no corresponding commands to process id(s)
[2025-11-28 17:10:16] 2025-11-28 22:09:45,305 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-28 17:10:16] 2025-11-28 22:09:45,308 | INFO     | did not find any defunct processes belonging to 30113
[2025-11-28 17:10:16] 2025-11-28 22:09:45,311 | INFO     | did not find any defunct processes belonging to 30113
[2025-11-28 17:10:16] 2025-11-28 22:09:45,312 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 17:10:16] 2025-11-28 22:09:45,312 | INFO     | ready for new job
[2025-11-28 17:10:16] 2025-11-28 22:09:45,312 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 17:10:16] 2025-11-28 22:09:45,316 | INFO     | ***************************************
[2025-11-28 17:10:16] 2025-11-28 22:09:45,316 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 17:10:16] 2025-11-28 22:09:45,316 | INFO     | ***************************************
[2025-11-28 17:10:16] 2025-11-28 22:09:45,316 | INFO     | 
[2025-11-28 17:10:16] 2025-11-28 22:09:45,317 | INFO     | architecture information:
[2025-11-28 17:10:16] 2025-11-28 22:09:45,320 | INFO     | executing command: cat /etc/os-release
[2025-11-28 17:10:16] 2025-11-28 22:09:45,329 | INFO     | cat /etc/os-release:
[2025-11-28 17:10:16] NAME="CentOS Linux"
[2025-11-28 17:10:16] VERSION="7 (Core)"
[2025-11-28 17:10:16] ID="centos"
[2025-11-28 17:10:16] ID_LIKE="rhel fedora"
[2025-11-28 17:10:16] VERSION_ID="7"
[2025-11-28 17:10:16] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 17:10:16] ANSI_COLOR="0;31"
[2025-11-28 17:10:16] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 17:10:16] HOME_URL="https://www.centos.org/"
[2025-11-28 17:10:16] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 17:10:16] 
[2025-11-28 17:10:16] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 17:10:16] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 17:10:16] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 17:10:16] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 17:10:16] 
[2025-11-28 17:10:16] 2025-11-28 22:09:45,329 | INFO     | ***************************************
[2025-11-28 17:10:16] 2025-11-28 22:09:45,833 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-28 17:10:16] 2025-11-28 22:09:45,849 | INFO     | sufficient remaining disk space (25003294720 B)
[2025-11-28 17:10:16] 2025-11-28 22:09:45,849 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 17:10:16] 2025-11-28 22:09:45,849 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 17:10:16] 2025-11-28 22:09:45,849 | INFO     | update_server=False
[2025-11-28 17:10:16] 2025-11-28 22:09:45,849 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 17:10:16] 2025-11-28 22:09:45,850 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 17:10:16] 2025-11-28 22:09:45,851 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 17:10:16] 2025-11-28 22:09:46,076 | INFO     | all payload control threads have been joined
[2025-11-28 17:10:16] 2025-11-28 22:09:46,123 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-28 17:10:16] 2025-11-28 22:09:46,123 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-28 17:10:16] 2025-11-28 22:09:46,124 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 17:10:16] 2025-11-28 22:09:46,124 | INFO     | will abort loop
[2025-11-28 17:10:16] 2025-11-28 22:09:46,588 | INFO     | all data control threads have been joined
[2025-11-28 17:10:16] 2025-11-28 22:09:46,855 | INFO     | [job] retrieve thread has finished
[2025-11-28 17:10:16] 2025-11-28 22:09:46,855 | INFO     | [job] queue monitor thread has finished
[2025-11-28 17:10:16] 2025-11-28 22:09:46,871 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 17:10:16] 2025-11-28 22:09:46,913 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 17:10:16] 2025-11-28 22:09:46,913 | INFO     | [job] validate thread has finished
[2025-11-28 17:10:16] 2025-11-28 22:09:46,978 | INFO     | all job control threads have been joined
[2025-11-28 17:10:16] 2025-11-28 22:09:47,024 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 17:10:16] 2025-11-28 22:09:47,041 | INFO     | [payload] validate_post thread has finished
[2025-11-28 17:10:16] 2025-11-28 22:09:47,078 | INFO     | [payload] control thread has finished
[2025-11-28 17:10:16] 2025-11-28 22:09:47,129 | INFO     | [job] job monitor thread has finished
[2025-11-28 17:10:16] 2025-11-28 22:09:47,312 | INFO     | [data] copytool_in thread has finished
[2025-11-28 17:10:16] 2025-11-28 22:09:47,356 | INFO     | [payload] failed_post thread has finished
[2025-11-28 17:10:16] 2025-11-28 22:09:47,451 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 17:10:16] 2025-11-28 22:09:47,594 | INFO     | [data] control thread has finished
[2025-11-28 17:10:16] 2025-11-28 22:09:47,857 | INFO     | [data] copytool_out thread has finished
[2025-11-28 17:10:16] 2025-11-28 22:09:47,983 | INFO     | [job] control thread has finished
[2025-11-28 17:10:16] 2025-11-28 22:09:48,968 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 17:10:16] 2025-11-28 22:09:49,376 | INFO     | [monitor] cgroup control has ended
[2025-11-28 17:10:16] 2025-11-28 22:09:52,977 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 17:10:16] 2025-11-28 22:09:54,924 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140567746012992)>', '<ExcThread(monitor, started 140567090554624)>']
[2025-11-28 17:10:16] 2025-11-28 22:09:59,934 | INFO     | all workflow threads have been joined
[2025-11-28 17:10:16] 2025-11-28 22:09:59,934 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 17:10:16] 2025-11-28 22:09:59,935 | INFO     | traces error code: 0
[2025-11-28 17:10:16] 2025-11-28 22:09:59,935 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 17:10:16] 2025-11-28 22:10:16,370 | INFO     | PID=23449 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-28 17:10:16] 2025-11-28 22:10:16,370 | INFO     | .. there are 3 such processes running
[2025-11-28 17:10:16] 2025-11-28 22:10:16,370 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 17:10:16] 2025-11-28 22:10:16,370 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 17:10:16] 2025-11-28 22:10:16,370 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 17:10:16] 2025-11-28 22:10:16,370 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 17:10:16] 2025-11-28 22:10:16,370 | INFO     | [monitor] control thread has ended
[2025-11-28 17:10:16] 2025-11-28 22:10:16,492 [wrapper] ==== pilot stdout END ====
[2025-11-28 17:10:16] 2025-11-28 22:10:16,495 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 17:10:16] 2025-11-28 22:10:16,497 [wrapper] pilotpid: 23449
[2025-11-28 17:10:16] 2025-11-28 22:10:16,500 [wrapper] Pilot exit status: 0
[2025-11-28 17:10:16] 2025-11-28 22:10:16,511 [wrapper] pandaids: 6898214380
[2025-11-28 17:10:16] 2025-11-28 22:10:16,542 [wrapper] cleanup supervisor_pilot 14461 23450
[2025-11-28 17:10:16] 2025-11-28 22:10:16,544 [wrapper] Test setup, not cleaning
[2025-11-28 17:10:16] 2025-11-28 22:10:16,546 [wrapper] apfmon messages muted
[2025-11-28 17:10:16] 2025-11-28 22:10:16,549 [wrapper] ==== wrapper stdout END ====
[2025-11-28 17:10:16] 2025-11-28 22:10:16,552 [wrapper] ==== wrapper stderr END ====
[2025-11-28 17:10:16]  *** Error codes and diagnostics ***
[2025-11-28 17:10:16]     "exeErrorCode": 0,
[2025-11-28 17:10:16]     "exeErrorDiag": "",
[2025-11-28 17:10:16]     "pilotErrorCode": 0,
[2025-11-28 17:10:16]     "pilotErrorDiag": "",
[2025-11-28 17:10:16]  *** Listing of results directory ***
[2025-11-28 17:10:16] total 1326836
[2025-11-28 17:10:16] -rw-r--r-- 1 boincer umatlas    576529 Nov 25 22:33 pilot3.tar.gz
[2025-11-28 17:10:16] -rwx------ 1 boincer umatlas     36292 Nov 25 23:28 runpilot2-wrapper.sh
[2025-11-28 17:10:16] -rw-r--r-- 1 boincer umatlas      5112 Nov 25 23:28 queuedata.json
[2025-11-28 17:10:16] -rw-r--r-- 1 boincer umatlas       100 Nov 27 21:14 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 17:10:16] -rwxr-xr-x 1 boincer umatlas      7986 Nov 27 21:14 run_atlas
[2025-11-28 17:10:16] -rw-r--r-- 1 boincer umatlas       105 Nov 27 21:14 job.xml
[2025-11-28 17:10:16] -rw-r--r-- 2 boincer umatlas 408504015 Nov 27 21:14 EVNT.47483658._002499.pool.root.1
[2025-11-28 17:10:16] -rw-r--r-- 2 boincer umatlas     15847 Nov 27 21:14 start_atlas.sh
[2025-11-28 17:10:16] drwxrwx--x 2 boincer umatlas      4096 Nov 27 21:14 shared
[2025-11-28 17:10:16] -rw-r--r-- 2 boincer umatlas    590111 Nov 27 21:14 input.tar.gz
[2025-11-28 17:10:16] -rw-r--r-- 1 boincer umatlas         0 Nov 27 21:14 boinc_lockfile
[2025-11-28 17:10:16] -rw-r--r-- 1 boincer umatlas      2785 Nov 27 21:14 pandaJob.out
[2025-11-28 17:10:16] -rw------- 1 boincer umatlas        57 Nov 27 21:14 setup.sh.local
[2025-11-28 17:10:16] -rw------- 1 boincer umatlas    991866 Nov 27 21:14 agis_schedconf.cvmfs.json
[2025-11-28 17:10:16] drwx------ 5 boincer umatlas      4096 Nov 27 21:14 pilot3
[2025-11-28 17:10:16] -rw-r--r-- 1 boincer umatlas       533 Nov 28 16:56 boinc_task_state.xml
[2025-11-28 17:10:16] -rw-r--r-- 1 boincer umatlas      5954 Nov 28 17:01 init_data.xml
[2025-11-28 17:10:16] -rw------- 1 boincer umatlas 921728593 Nov 28 17:08 HITS.47556161._004818.pool.root.1
[2025-11-28 17:10:16] -rw------- 1 boincer umatlas      1068 Nov 28 17:09 memory_monitor_summary.json
[2025-11-28 17:10:16] -rw------- 1 boincer umatlas   1516240 Nov 28 17:09 agis_ddmendpoints.agis.ALL.json
[2025-11-28 17:10:16] -rw------- 1 boincer umatlas   2341571 Nov 28 17:09 log.47556161._004818.job.log.tgz.1
[2025-11-28 17:10:16] -rw------- 1 boincer umatlas        95 Nov 28 17:09 pilot_heartbeat.json
[2025-11-28 17:10:16] -rw------- 1 boincer umatlas      8665 Nov 28 17:09 heartbeat.json
[2025-11-28 17:10:16] -rw-r--r-- 1 boincer umatlas      8192 Nov 28 17:10 boinc_mmap_file
[2025-11-28 17:10:16] -rw-r--r-- 1 boincer umatlas        29 Nov 28 17:10 wrapper_checkpoint.txt
[2025-11-28 17:10:16] -rw------- 1 boincer umatlas       820 Nov 28 17:10 pilotlog.txt
[2025-11-28 17:10:16] -rw------- 1 boincer umatlas   9923198 Nov 28 17:10 log.47556161._004818.job.log.1
[2025-11-28 17:10:16] -rw------- 1 boincer umatlas       353 Nov 28 17:10 output.list
[2025-11-28 17:10:16] -rw-r--r-- 1 boincer umatlas       620 Nov 28 17:10 runtime_log
[2025-11-28 17:10:16] -rw------- 1 boincer umatlas  12288000 Nov 28 17:10 result.tar.gz
[2025-11-28 17:10:16] -rw-r--r-- 1 boincer umatlas      9343 Nov 28 17:10 runtime_log.err
[2025-11-28 17:10:16] -rw------- 1 boincer umatlas       668 Nov 28 17:10 5tzNDmtJMi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmNwJKDmcGk7vm.diag
[2025-11-28 17:10:16] -rw-r--r-- 1 boincer umatlas     21263 Nov 28 17:10 stderr.txt
[2025-11-28 17:10:16] HITS file was successfully produced:
[2025-11-28 17:10:16] -rw------- 1 boincer umatlas 921728593 Nov 28 17:08 shared/HITS.pool.root.1
[2025-11-28 17:10:16]  *** Contents of shared directory: ***
[2025-11-28 17:10:16] total 1311660
[2025-11-28 17:10:16] -rw-r--r-- 2 boincer umatlas 408504015 Nov 27 21:14 ATLAS.root_0
[2025-11-28 17:10:16] -rw-r--r-- 2 boincer umatlas     15847 Nov 27 21:14 start_atlas.sh
[2025-11-28 17:10:16] -rw-r--r-- 2 boincer umatlas    590111 Nov 27 21:14 input.tar.gz
[2025-11-28 17:10:16] -rw------- 1 boincer umatlas 921728593 Nov 28 17:08 HITS.pool.root.1
[2025-11-28 17:10:16] -rw------- 1 boincer umatlas  12288000 Nov 28 17:10 result.tar.gz
17:10:18 (19768): run_atlas exited; CPU time 553606.245142
17:10:18 (19768): called boinc_finish(0)

</stderr_txt>
]]>

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