Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
21:20:43 (5062): wrapper (7.7.26015): starting
21:20:43 (5062): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 21:20:43] Arguments: --nthreads 8
[2025-11-27 21:20:43] Threads: 8
[2025-11-27 21:20:43] Checking for CVMFS
[2025-11-27 21:20:43] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 21:20:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 21:20:43] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 21:20:44] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 21:20:44] 2.11.2.0 24877 119956 147852 153393 3 81 17688609 18432001 1885 130560 0 87530857 99.975 4966955 32033 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-27 21:20:44] CVMFS is ok
[2025-11-27 21:20:44] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 21:20:44] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 21:20:44] Further information can be found at the LHC@home message board.
[2025-11-27 21:20:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 21:20:44] Checking for apptainer binary...
[2025-11-27 21:20:44] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 21:20:44] Running /usr/bin/apptainer --version
[2025-11-27 21:20:44] apptainer version 1.3.2-1.el7
[2025-11-27 21:20:44] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 21:20:44] c-206-3.aglt2.org
[2025-11-27 21:20:44] apptainer works
[2025-11-27 21:20:44] Set ATHENA_PROC_NUMBER=8
[2025-11-27 21:20:44] Set ATHENA_CORE_NUMBER=8
[2025-11-27 21:20:44] Starting ATLAS job with PandaID=6899464671
[2025-11-27 21:20:44] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 16:43:57]  *** The last 200 lines of the pilot log: ***
[2025-11-28 16:43:57] 2025-11-28 21:43:23,894 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6899464671/memory_monitor_summary.json (trf name=prmon)
[2025-11-28 16:43:57] 2025-11-28 21:43:23,895 | INFO     | extracted standard info from prmon json
[2025-11-28 16:43:57] 2025-11-28 21:43:23,895 | INFO     | extracted standard memory fields from prmon json
[2025-11-28 16:43:57] 2025-11-28 21:43:23,895 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-28 16:43:57] 2025-11-28 21:43:23,911 | INFO     | fitting pss+swap vs Time
[2025-11-28 16:43:57] 2025-11-28 21:43:23,921 | INFO     | sum of square deviations: 463038184048.8501
[2025-11-28 16:43:57] 2025-11-28 21:43:23,929 | INFO     | monitor loop #4996: job 0:6899464671 is in state 'finished'
[2025-11-28 16:43:57] 2025-11-28 21:43:23,935 | INFO     | time since job start (69747s) is within the limit (172800.0s)
[2025-11-28 16:43:57] 2025-11-28 21:43:23,940 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 16:43:57] 2025-11-28 21:43:23,966 | INFO     | sum of deviations: 2134842939674.0378
[2025-11-28 16:43:57] 2025-11-28 21:43:23,966 | INFO     | mean x: 1764331313.6141732
[2025-11-28 16:43:57] 2025-11-28 21:43:23,966 | INFO     | mean y: 2870619.97287839
[2025-11-28 16:43:57] 2025-11-28 21:43:23,966 | INFO     | intersect: -8131599447.22501
[2025-11-28 16:43:57] 2025-11-28 21:43:23,968 | INFO     | chi2: 5.226078680715812
[2025-11-28 16:43:57] 2025-11-28 21:43:23,970 | INFO     | sum of square deviations: 456988321929.4557
[2025-11-28 16:43:57] 2025-11-28 21:43:24,003 | INFO     | sum of deviations: 2473804018564.2266
[2025-11-28 16:43:57] 2025-11-28 21:43:24,003 | INFO     | mean x: 1764331161.1168716
[2025-11-28 16:43:57] 2025-11-28 21:43:24,003 | INFO     | mean y: 2879161.3892794377
[2025-11-28 16:43:57] 2025-11-28 21:43:24,003 | INFO     | intersect: -9547932767.504519
[2025-11-28 16:43:57] 2025-11-28 21:43:24,005 | INFO     | chi2: 2.5508934837847543
[2025-11-28 16:43:57] 2025-11-28 21:43:24,005 | INFO     | current chi2=2.5508934837847543 (change=51.18914888906034 %)
[2025-11-28 16:43:57] 2025-11-28 21:43:24,007 | INFO     | sum of square deviations: 450991391035.04504
[2025-11-28 16:43:57] 2025-11-28 21:43:24,049 | INFO     | sum of deviations: 2563614255876.8364
[2025-11-28 16:43:57] 2025-11-28 21:43:24,049 | INFO     | mean x: 1764331008.619594
[2025-11-28 16:43:57] 2025-11-28 21:43:24,049 | INFO     | mean y: 2881442.6469549867
[2025-11-28 16:43:57] 2025-11-28 21:43:24,049 | INFO     | intersect: -10026277019.56253
[2025-11-28 16:43:57] 2025-11-28 21:43:24,050 | INFO     | chi2: 2.2541028863478467
[2025-11-28 16:43:57] 2025-11-28 21:43:24,050 | INFO     | current chi2=2.2541028863478467 (change=11.634770300034642 %)
[2025-11-28 16:43:57] 2025-11-28 21:43:24,050 | INFO     | right removable region: 1132
[2025-11-28 16:43:57] 2025-11-28 21:43:24,051 | INFO     | sum of square deviations: 456987893709.456
[2025-11-28 16:43:57] 2025-11-28 21:43:24,075 | INFO     | sum of deviations: 1839411087731.6497
[2025-11-28 16:43:57] 2025-11-28 21:43:24,075 | INFO     | mean x: 1764331466.1168716
[2025-11-28 16:43:57] 2025-11-28 21:43:24,075 | INFO     | mean y: 2878058.002636204
[2025-11-28 16:43:57] 2025-11-28 21:43:24,075 | INFO     | intersect: -7098690508.4341135
[2025-11-28 16:43:57] 2025-11-28 21:43:24,076 | INFO     | chi2: 3.1937350065016807
[2025-11-28 16:43:57] 2025-11-28 21:43:24,076 | INFO     | current chi2=3.1937350065016807 (change=38.88850127177501 %)
[2025-11-28 16:43:57] 2025-11-28 21:43:24,077 | INFO     | sum of square deviations: 450990742483.7538
[2025-11-28 16:43:57] 2025-11-28 21:43:24,108 | INFO     | sum of deviations: 1766900714512.138
[2025-11-28 16:43:57] 2025-11-28 21:43:24,109 | INFO     | mean x: 1764331618.6169462
[2025-11-28 16:43:57] 2025-11-28 21:43:24,109 | INFO     | mean y: 2879901.576345984
[2025-11-28 16:43:57] 2025-11-28 21:43:24,109 | INFO     | intersect: -6909454441.257617
[2025-11-28 16:43:57] 2025-11-28 21:43:24,110 | INFO     | chi2: 3.1464873043473864
[2025-11-28 16:43:57] 2025-11-28 21:43:24,110 | INFO     | current chi2=3.1464873043473864 (change=1.4793870517782244 %)
[2025-11-28 16:43:57] 2025-11-28 21:43:24,110 | INFO     | left removable region: 20
[2025-11-28 16:43:57] 2025-11-28 21:43:24,111 | INFO     | sum of square deviations: 426376015523.3675
[2025-11-28 16:43:57] 2025-11-28 21:43:24,133 | INFO     | sum of deviations: 2099685755562.912
[2025-11-28 16:43:57] 2025-11-28 21:43:24,133 | INFO     | mean x: 1764331588.122302
[2025-11-28 16:43:57] 2025-11-28 21:43:24,133 | INFO     | mean y: 2893505.8462230214
[2025-11-28 16:43:57] 2025-11-28 21:43:24,133 | INFO     | intersect: -8685545263.681751
[2025-11-28 16:43:57] 2025-11-28 21:43:24,134 | INFO     | chi2: 0.13549958186303232
[2025-11-28 16:43:57] 2025-11-28 21:43:24,134 | INFO     | current memory leak: 4.92 B/s (using 1112 data points, chi2=0.14)
[2025-11-28 16:43:57] 2025-11-28 21:43:24,135 | INFO     | could have reported an average CPU frequency of 2624 MHz (42 samples)
[2025-11-28 16:43:57] 2025-11-28 21:43:24,135 | INFO     | ..............................
[2025-11-28 16:43:57] 2025-11-28 21:43:24,136 | INFO     | . Timing measurements:
[2025-11-28 16:43:57] 2025-11-28 21:43:24,136 | INFO     | . get job = 0 s
[2025-11-28 16:43:57] 2025-11-28 21:43:24,136 | INFO     | . initial setup = 2 s
[2025-11-28 16:43:57] 2025-11-28 21:43:24,136 | INFO     | . payload setup = 5 s
[2025-11-28 16:43:57] 2025-11-28 21:43:24,136 | INFO     | . stage-in = 0 s
[2025-11-28 16:43:57] 2025-11-28 21:43:24,136 | INFO     | . payload execution = 69714 s
[2025-11-28 16:43:57] 2025-11-28 21:43:24,136 | INFO     | . stage-out = 3 s
[2025-11-28 16:43:57] 2025-11-28 21:43:24,136 | INFO     | . log creation = 0 s
[2025-11-28 16:43:57] 2025-11-28 21:43:24,136 | INFO     | ..............................
[2025-11-28 16:43:57] 2025-11-28 21:43:24,241 | INFO     | 
[2025-11-28 16:43:57] 2025-11-28 21:43:24,241 | INFO     | job summary report
[2025-11-28 16:43:57] 2025-11-28 21:43:24,241 | INFO     | --------------------------------------------------
[2025-11-28 16:43:57] 2025-11-28 21:43:24,241 | INFO     | PanDA job id: 6899464671
[2025-11-28 16:43:57] 2025-11-28 21:43:24,241 | INFO     | task id: 47556185
[2025-11-28 16:43:57] 2025-11-28 21:43:24,241 | INFO     | errors: (none)
[2025-11-28 16:43:57] 2025-11-28 21:43:24,241 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-28 16:43:57] 2025-11-28 21:43:24,242 | INFO     | pilot state: finished 
[2025-11-28 16:43:57] 2025-11-28 21:43:24,242 | INFO     | transexitcode: 0
[2025-11-28 16:43:57] 2025-11-28 21:43:24,242 | INFO     | exeerrorcode: 0
[2025-11-28 16:43:57] 2025-11-28 21:43:24,242 | INFO     | exeerrordiag: 
[2025-11-28 16:43:57] 2025-11-28 21:43:24,242 | INFO     | exitcode: 0
[2025-11-28 16:43:57] 2025-11-28 21:43:24,242 | INFO     | exitmsg: OK
[2025-11-28 16:43:57] 2025-11-28 21:43:24,242 | INFO     | cpuconsumptiontime: 536910 s
[2025-11-28 16:43:57] 2025-11-28 21:43:24,242 | INFO     | nevents: 1000
[2025-11-28 16:43:57] 2025-11-28 21:43:24,242 | INFO     | neventsw: 0
[2025-11-28 16:43:57] 2025-11-28 21:43:24,242 | INFO     | pid: 17206
[2025-11-28 16:43:57] 2025-11-28 21:43:24,243 | INFO     | pgrp: 17206
[2025-11-28 16:43:57] 2025-11-28 21:43:24,243 | INFO     | corecount: 8
[2025-11-28 16:43:57] 2025-11-28 21:43:24,243 | INFO     | event service: False
[2025-11-28 16:43:57] 2025-11-28 21:43:24,243 | INFO     | sizes: {0: 2284087, 1: 2284342, 5: 2284604, 12: 2284660, 69723: 2341204, 69727: 2350198, 69728: 2350382, 69733: 2350628}
[2025-11-28 16:43:57] 2025-11-28 21:43:24,243 | INFO     | --------------------------------------------------
[2025-11-28 16:43:57] 2025-11-28 21:43:24,243 | INFO     | 
[2025-11-28 16:43:57] 2025-11-28 21:43:24,243 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-28 16:43:57] 2025-11-28 21:43:24,271 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-28 16:43:57] 2025-11-28 21:43:24,271 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-28 16:43:57] 2025-11-28 21:43:24,271 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-28 16:43:57] 2025-11-28 21:43:24,271 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-28 16:43:57] 2025-11-28 21:43:24,272 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-28 16:43:57] 2025-11-28 21:43:24,272 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-28 16:43:57] 2025-11-28 21:43:24,272 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-28 16:43:57] 2025-11-28 21:43:24,272 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-28 16:43:57] 2025-11-28 21:43:24,272 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-28 16:43:57] 2025-11-28 21:43:24,272 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-28 16:43:57] 2025-11-28 21:43:24,273 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-28 16:43:57] 2025-11-28 21:43:24,273 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-28 16:43:57] 2025-11-28 21:43:24,273 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-28 16:43:57] 2025-11-28 21:43:24,273 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-28 16:43:57] 2025-11-28 21:43:24,273 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-28 16:43:57] 2025-11-28 21:43:24,274 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-28 16:43:57] 2025-11-28 21:43:24,274 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-28 16:43:57] 2025-11-28 21:43:24,274 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-28 16:43:57] 2025-11-28 21:43:24,274 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-28 16:43:57] 2025-11-28 21:43:24,275 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-28 16:43:57] 2025-11-28 21:43:24,275 | INFO     | job 6899464671 has completed (purged errors)
[2025-11-28 16:43:57] 2025-11-28 21:43:24,275 | INFO     | overall cleanup function is called
[2025-11-28 16:43:57] 2025-11-28 21:43:25,292 | INFO     | --- collectZombieJob: --- 10, [17206]
[2025-11-28 16:43:57] 2025-11-28 21:43:25,292 | INFO     | zombie collector waiting for pid 17206
[2025-11-28 16:43:57] 2025-11-28 21:43:25,292 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-28 16:43:57] 2025-11-28 21:43:25,293 | INFO     | collected zombie processes
[2025-11-28 16:43:57] 2025-11-28 21:43:25,293 | INFO     | will attempt to kill all subprocesses of pid=17206
[2025-11-28 16:43:57] 2025-11-28 21:43:25,455 | INFO     | process IDs to be killed: [17206] (in reverse order)
[2025-11-28 16:43:57] 2025-11-28 21:43:25,503 | WARNING  | found no corresponding commands to process id(s)
[2025-11-28 16:43:57] 2025-11-28 21:43:25,504 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-28 16:43:57] 2025-11-28 21:43:25,509 | INFO     | did not find any defunct processes belonging to 17206
[2025-11-28 16:43:57] 2025-11-28 21:43:25,514 | INFO     | did not find any defunct processes belonging to 17206
[2025-11-28 16:43:57] 2025-11-28 21:43:25,516 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 16:43:57] 2025-11-28 21:43:25,516 | INFO     | ready for new job
[2025-11-28 16:43:57] 2025-11-28 21:43:25,516 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 16:43:57] 2025-11-28 21:43:25,649 | INFO     | ***************************************
[2025-11-28 16:43:57] 2025-11-28 21:43:25,649 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 16:43:57] 2025-11-28 21:43:25,649 | INFO     | ***************************************
[2025-11-28 16:43:57] 2025-11-28 21:43:25,650 | INFO     | 
[2025-11-28 16:43:57] 2025-11-28 21:43:25,651 | INFO     | architecture information:
[2025-11-28 16:43:57] 2025-11-28 21:43:25,651 | INFO     | executing command: cat /etc/os-release
[2025-11-28 16:43:57] 2025-11-28 21:43:25,698 | INFO     | cat /etc/os-release:
[2025-11-28 16:43:57] NAME="CentOS Linux"
[2025-11-28 16:43:57] VERSION="7 (Core)"
[2025-11-28 16:43:57] ID="centos"
[2025-11-28 16:43:57] ID_LIKE="rhel fedora"
[2025-11-28 16:43:57] VERSION_ID="7"
[2025-11-28 16:43:57] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 16:43:57] ANSI_COLOR="0;31"
[2025-11-28 16:43:57] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 16:43:57] HOME_URL="https://www.centos.org/"
[2025-11-28 16:43:57] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 16:43:57] 
[2025-11-28 16:43:57] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 16:43:57] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 16:43:57] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 16:43:57] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 16:43:57] 
[2025-11-28 16:43:57] 2025-11-28 21:43:25,699 | INFO     | ***************************************
[2025-11-28 16:43:57] 2025-11-28 21:43:26,201 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-28 16:43:57] 2025-11-28 21:43:26,217 | INFO     | sufficient remaining disk space (25947013120 B)
[2025-11-28 16:43:57] 2025-11-28 21:43:26,217 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 16:43:57] 2025-11-28 21:43:26,217 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 16:43:57] 2025-11-28 21:43:26,218 | INFO     | update_server=False
[2025-11-28 16:43:57] 2025-11-28 21:43:26,218 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 16:43:57] 2025-11-28 21:43:26,218 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 16:43:57] 2025-11-28 21:43:26,218 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 16:43:57] 2025-11-28 21:43:26,469 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-28 16:43:57] 2025-11-28 21:43:26,469 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-28 16:43:57] 2025-11-28 21:43:26,469 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 16:43:57] 2025-11-28 21:43:26,469 | INFO     | will abort loop
[2025-11-28 16:43:57] 2025-11-28 21:43:26,687 | INFO     | all job control threads have been joined
[2025-11-28 16:43:57] 2025-11-28 21:43:27,068 | INFO     | all data control threads have been joined
[2025-11-28 16:43:57] 2025-11-28 21:43:27,224 | INFO     | [job] queue monitor thread has finished
[2025-11-28 16:43:57] 2025-11-28 21:43:27,224 | INFO     | [job] retrieve thread has finished
[2025-11-28 16:43:57] 2025-11-28 21:43:27,438 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 16:43:57] 2025-11-28 21:43:27,475 | INFO     | [job] job monitor thread has finished
[2025-11-28 16:43:57] 2025-11-28 21:43:27,621 | INFO     | all payload control threads have been joined
[2025-11-28 16:43:57] 2025-11-28 21:43:27,693 | INFO     | [job] control thread has finished
[2025-11-28 16:43:57] 2025-11-28 21:43:27,969 | INFO     | [payload] validate_post thread has finished
[2025-11-28 16:43:57] 2025-11-28 21:43:28,074 | INFO     | [data] control thread has finished
[2025-11-28 16:43:57] 2025-11-28 21:43:28,183 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 16:43:57] 2025-11-28 21:43:28,224 | INFO     | [data] copytool_out thread has finished
[2025-11-28 16:43:57] 2025-11-28 21:43:28,259 | INFO     | [job] validate thread has finished
[2025-11-28 16:43:57] 2025-11-28 21:43:28,332 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 16:43:57] 2025-11-28 21:43:28,361 | INFO     | [data] copytool_in thread has finished
[2025-11-28 16:43:57] 2025-11-28 21:43:28,598 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 16:43:57] 2025-11-28 21:43:28,625 | INFO     | [payload] control thread has finished
[2025-11-28 16:43:57] 2025-11-28 21:43:28,813 | INFO     | [payload] failed_post thread has finished
[2025-11-28 16:43:57] 2025-11-28 21:43:29,675 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 16:43:57] 2025-11-28 21:43:33,684 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 16:43:57] 2025-11-28 21:43:51,157 | INFO     | [monitor] cgroup control has ended
[2025-11-28 16:43:57] 2025-11-28 21:43:51,393 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139991878207296)>', '<ExcThread(monitor, started 139991296501504)>']
[2025-11-28 16:43:57] 2025-11-28 21:43:56,419 | INFO     | all workflow threads have been joined
[2025-11-28 16:43:57] 2025-11-28 21:43:56,419 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 16:43:57] 2025-11-28 21:43:56,420 | INFO     | traces error code: 0
[2025-11-28 16:43:57] 2025-11-28 21:43:56,420 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 16:43:57] 2025-11-28 21:43:57,175 | INFO     | PID=9324 has CPU usage=4.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-28 16:43:57] 2025-11-28 21:43:57,176 | INFO     | .. there are 3 such processes running
[2025-11-28 16:43:57] 2025-11-28 21:43:57,177 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 16:43:57] 2025-11-28 21:43:57,177 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 16:43:57] 2025-11-28 21:43:57,177 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 16:43:57] 2025-11-28 21:43:57,177 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 16:43:57] 2025-11-28 21:43:57,177 | INFO     | [monitor] control thread has ended
[2025-11-28 16:43:57] 2025-11-28 21:43:57,305 [wrapper] ==== pilot stdout END ====
[2025-11-28 16:43:57] 2025-11-28 21:43:57,308 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 16:43:57] 2025-11-28 21:43:57,310 [wrapper] pilotpid: 9324
[2025-11-28 16:43:57] 2025-11-28 21:43:57,312 [wrapper] Pilot exit status: 0
[2025-11-28 16:43:57] 2025-11-28 21:43:57,320 [wrapper] pandaids: 6899464671
[2025-11-28 16:43:57] 2025-11-28 21:43:57,350 [wrapper] cleanup supervisor_pilot 26042 9325
[2025-11-28 16:43:57] 2025-11-28 21:43:57,353 [wrapper] Test setup, not cleaning
[2025-11-28 16:43:57] 2025-11-28 21:43:57,355 [wrapper] apfmon messages muted
[2025-11-28 16:43:57] 2025-11-28 21:43:57,357 [wrapper] ==== wrapper stdout END ====
[2025-11-28 16:43:57] 2025-11-28 21:43:57,359 [wrapper] ==== wrapper stderr END ====
[2025-11-28 16:43:57]  *** Error codes and diagnostics ***
[2025-11-28 16:43:57]     "exeErrorCode": 0,
[2025-11-28 16:43:57]     "exeErrorDiag": "",
[2025-11-28 16:43:57]     "pilotErrorCode": 0,
[2025-11-28 16:43:57]     "pilotErrorDiag": "",
[2025-11-28 16:43:57]  *** Listing of results directory ***
[2025-11-28 16:43:57] total 1317456
[2025-11-28 16:43:57] -rw-r--r-- 1 boincer umatlas    576529 Nov 27 03:46 pilot3.tar.gz
[2025-11-28 16:43:57] -rwx------ 1 boincer umatlas     36292 Nov 27 03:49 runpilot2-wrapper.sh
[2025-11-28 16:43:57] -rw-r--r-- 1 boincer umatlas      5112 Nov 27 03:53 queuedata.json
[2025-11-28 16:43:57] -rw-r--r-- 1 boincer umatlas       100 Nov 27 21:20 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 16:43:57] -rwxr-xr-x 1 boincer umatlas      7986 Nov 27 21:20 run_atlas
[2025-11-28 16:43:57] -rw-r--r-- 1 boincer umatlas       105 Nov 27 21:20 job.xml
[2025-11-28 16:43:57] -rw-r--r-- 2 boincer umatlas 409651108 Nov 27 21:20 EVNT.47483658._004323.pool.root.1
[2025-11-28 16:43:57] -rw-r--r-- 2 boincer umatlas     15847 Nov 27 21:20 start_atlas.sh
[2025-11-28 16:43:57] drwxrwx--x 2 boincer umatlas      4096 Nov 27 21:20 shared
[2025-11-28 16:43:57] -rw-r--r-- 2 boincer umatlas    590114 Nov 27 21:20 input.tar.gz
[2025-11-28 16:43:57] -rw-r--r-- 1 boincer umatlas         0 Nov 27 21:20 boinc_lockfile
[2025-11-28 16:43:57] -rw-r--r-- 1 boincer umatlas      2786 Nov 27 21:20 pandaJob.out
[2025-11-28 16:43:57] -rw------- 1 boincer umatlas        57 Nov 27 21:20 setup.sh.local
[2025-11-28 16:43:57] -rw------- 1 boincer umatlas    991842 Nov 27 21:20 agis_schedconf.cvmfs.json
[2025-11-28 16:43:57] drwx------ 5 boincer umatlas      4096 Nov 27 21:20 pilot3
[2025-11-28 16:43:57] -rw-r--r-- 1 boincer umatlas       533 Nov 28 16:31 boinc_task_state.xml
[2025-11-28 16:43:57] -rw-r--r-- 1 boincer umatlas      5953 Nov 28 16:36 init_data.xml
[2025-11-28 16:43:57] -rw------- 1 boincer umatlas 911540912 Nov 28 16:42 HITS.47556185._000868.pool.root.1
[2025-11-28 16:43:57] -rw------- 1 boincer umatlas      1068 Nov 28 16:43 memory_monitor_summary.json
[2025-11-28 16:43:57] -rw------- 1 boincer umatlas   1516240 Nov 28 16:43 agis_ddmendpoints.agis.ALL.json
[2025-11-28 16:43:57] -rw------- 1 boincer umatlas   2321481 Nov 28 16:43 log.47556185._000868.job.log.tgz.1
[2025-11-28 16:43:57] -rw------- 1 boincer umatlas      8675 Nov 28 16:43 heartbeat.json
[2025-11-28 16:43:57] -rw-r--r-- 1 boincer umatlas      8192 Nov 28 16:43 boinc_mmap_file
[2025-11-28 16:43:57] -rw-r--r-- 1 boincer umatlas        29 Nov 28 16:43 wrapper_checkpoint.txt
[2025-11-28 16:43:57] -rw------- 1 boincer umatlas        95 Nov 28 16:43 pilot_heartbeat.json
[2025-11-28 16:43:57] -rw------- 1 boincer umatlas       819 Nov 28 16:43 pilotlog.txt
[2025-11-28 16:43:57] -rw------- 1 boincer umatlas   9660086 Nov 28 16:43 log.47556185._000868.job.log.1
[2025-11-28 16:43:57] -rw------- 1 boincer umatlas       353 Nov 28 16:43 output.list
[2025-11-28 16:43:57] -rw-r--r-- 1 boincer umatlas       620 Nov 28 16:43 runtime_log
[2025-11-28 16:43:57] -rw------- 1 boincer umatlas  12001280 Nov 28 16:43 result.tar.gz
[2025-11-28 16:43:57] -rw------- 1 boincer umatlas       667 Nov 28 16:43 YPlMDmJsmi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmriKKDmxygtNm.diag
[2025-11-28 16:43:57] -rw-r--r-- 1 boincer umatlas      9338 Nov 28 16:43 runtime_log.err
[2025-11-28 16:43:57] -rw-r--r-- 1 boincer umatlas     21303 Nov 28 16:43 stderr.txt
[2025-11-28 16:43:57] HITS file was successfully produced:
[2025-11-28 16:43:57] -rw------- 1 boincer umatlas 911540912 Nov 28 16:42 shared/HITS.pool.root.1
[2025-11-28 16:43:57]  *** Contents of shared directory: ***
[2025-11-28 16:43:57] total 1302556
[2025-11-28 16:43:57] -rw-r--r-- 2 boincer umatlas 409651108 Nov 27 21:20 ATLAS.root_0
[2025-11-28 16:43:57] -rw-r--r-- 2 boincer umatlas     15847 Nov 27 21:20 start_atlas.sh
[2025-11-28 16:43:57] -rw-r--r-- 2 boincer umatlas    590114 Nov 27 21:20 input.tar.gz
[2025-11-28 16:43:57] -rw------- 1 boincer umatlas 911540912 Nov 28 16:42 HITS.pool.root.1
[2025-11-28 16:43:57] -rw------- 1 boincer umatlas  12001280 Nov 28 16:43 result.tar.gz
16:43:59 (5062): run_atlas exited; CPU time 535593.462228
16:43:59 (5062): called boinc_finish(0)

</stderr_txt>
]]>

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