Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
14:21:07 (14741): wrapper (7.7.26015): starting
14:21:07 (14741): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 14:21:07] Arguments: --nthreads 8
[2025-11-27 14:21:07] Threads: 8
[2025-11-27 14:21:07] Checking for CVMFS
[2025-11-27 14:21:07] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 14:21:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 14:21:07] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 14:21:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 14:21:07] 2.11.2.0 2951 26421 78796 153381 0 71 10662346 20275200 1 130560 0 4948331 99.729 1698335 30796 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-27 14:21:07] CVMFS is ok
[2025-11-27 14:21:07] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 14:21:07] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 14:21:07] Further information can be found at the LHC@home message board.
[2025-11-27 14:21:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 14:21:07] Checking for apptainer binary...
[2025-11-27 14:21:07] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 14:21:07] Running /usr/bin/apptainer --version
[2025-11-27 14:21:07] apptainer version 1.3.2-1.el7
[2025-11-27 14:21:07] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 14:21:09] c-204-23.aglt2.org
[2025-11-27 14:21:09] apptainer works
[2025-11-27 14:21:09] Set ATHENA_PROC_NUMBER=8
[2025-11-27 14:21:09] Set ATHENA_CORE_NUMBER=8
[2025-11-27 14:21:09] Starting ATLAS job with PandaID=6898489540
[2025-11-27 14:21:09] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
17:50:23 (30997): wrapper (7.7.26015): starting
17:50:23 (30997): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 17:50:23] Arguments: --nthreads 8
[2025-11-27 17:50:23] Threads: 8
[2025-11-27 17:50:23] This job has been restarted, cleaning up previous attempt
[2025-11-27 17:50:23] Checking for CVMFS
[2025-11-27 17:50:24] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 17:50:24] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 17:50:24] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 17:50:24] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 17:50:24] 2.11.2.0 2951 26630 80092 153387 3 58 12918855 20275201 1 130560 0 5064743 99.734 1709116 30837 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-27 17:50:24] CVMFS is ok
[2025-11-27 17:50:24] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 17:50:24] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 17:50:24] Further information can be found at the LHC@home message board.
[2025-11-27 17:50:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 17:50:24] Checking for apptainer binary...
[2025-11-27 17:50:24] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 17:50:24] Running /usr/bin/apptainer --version
[2025-11-27 17:50:24] apptainer version 1.3.2-1.el7
[2025-11-27 17:50:24] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 17:50:26] c-204-23.aglt2.org
[2025-11-27 17:50:26] apptainer works
[2025-11-27 17:50:26] Set ATHENA_PROC_NUMBER=8
[2025-11-27 17:50:26] Set ATHENA_CORE_NUMBER=8
[2025-11-27 17:50:26] Starting ATLAS job with PandaID=6898489540
[2025-11-27 17:50:26] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 06:05:12]  *** The last 200 lines of the pilot log: ***
[2025-11-28 06:05:12] 2025-11-28 11:04:37,296 | INFO     | monitor loop #3235: job 0:6898489540 is in state 'finished'
[2025-11-28 06:05:12] 2025-11-28 11:04:37,302 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 06:05:12] 2025-11-28 11:04:38,828 | INFO     | time since job start (44035s) is within the limit (172800.0s)
[2025-11-28 06:05:12] 2025-11-28 11:04:39,531 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-28 06:05:12] 2025-11-28 11:04:39,535 | INFO     | found 8 cores (4 cores per socket, 2 sockets) , CPU MHz: 1695.875
[2025-11-28 06:05:12] 2025-11-28 11:04:39,537 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6898489540/memory_monitor_summary.json (trf name=prmon)
[2025-11-28 06:05:12] 2025-11-28 11:04:39,538 | INFO     | extracted standard info from prmon json
[2025-11-28 06:05:12] 2025-11-28 11:04:39,538 | INFO     | extracted standard memory fields from prmon json
[2025-11-28 06:05:12] 2025-11-28 11:04:39,538 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-28 06:05:12] 2025-11-28 11:04:39,552 | INFO     | fitting pss+swap vs Time
[2025-11-28 06:05:12] 2025-11-28 11:04:39,553 | INFO     | sum of square deviations: 116704609105.73006
[2025-11-28 06:05:12] 2025-11-28 11:04:39,564 | INFO     | sum of deviations: 777440324129.4274
[2025-11-28 06:05:12] 2025-11-28 11:04:39,564 | INFO     | mean x: 1764305867.1454294
[2025-11-28 06:05:12] 2025-11-28 11:04:39,564 | INFO     | mean y: 3242734.5387811633
[2025-11-28 06:05:12] 2025-11-28 11:04:39,564 | INFO     | intersect: -11749870837.645294
[2025-11-28 06:05:12] 2025-11-28 11:04:39,565 | INFO     | chi2: 7.204715326196686
[2025-11-28 06:05:12] 2025-11-28 11:04:39,566 | INFO     | sum of square deviations: 114296882831.13249
[2025-11-28 06:05:12] 2025-11-28 11:04:39,576 | INFO     | sum of deviations: 1083881589693.2996
[2025-11-28 06:05:12] 2025-11-28 11:04:39,577 | INFO     | mean x: 1764305714.6499302
[2025-11-28 06:05:12] 2025-11-28 11:04:39,577 | INFO     | mean y: 3262144.9972106
[2025-11-28 06:05:12] 2025-11-28 11:04:39,577 | INFO     | intersect: -16727714547.736027
[2025-11-28 06:05:12] 2025-11-28 11:04:39,578 | INFO     | chi2: 3.3218739880968533
[2025-11-28 06:05:12] 2025-11-28 11:04:39,578 | INFO     | current chi2=3.3218739880968533 (change=53.893057009228905 %)
[2025-11-28 06:05:12] 2025-11-28 11:04:39,579 | INFO     | sum of square deviations: 111922506019.00499
[2025-11-28 06:05:12] 2025-11-28 11:04:39,591 | INFO     | sum of deviations: 1181957128916.0295
[2025-11-28 06:05:12] 2025-11-28 11:04:39,591 | INFO     | mean x: 1764305562.1544943
[2025-11-28 06:05:12] 2025-11-28 11:04:39,592 | INFO     | mean y: 3268436.7724719103
[2025-11-28 06:05:12] 2025-11-28 11:04:39,592 | INFO     | intersect: -18628672635.210026
[2025-11-28 06:05:12] 2025-11-28 11:04:39,592 | INFO     | chi2: 2.7838385024241528
[2025-11-28 06:05:12] 2025-11-28 11:04:39,593 | INFO     | current chi2=2.7838385024241528 (change=16.196745800732444 %)
[2025-11-28 06:05:12] 2025-11-28 11:04:39,593 | INFO     | right removable region: 711
[2025-11-28 06:05:12] 2025-11-28 11:04:39,593 | INFO     | sum of square deviations: 114296598571.13252
[2025-11-28 06:05:12] 2025-11-28 11:04:39,606 | INFO     | sum of deviations: 543021853067.346
[2025-11-28 06:05:12] 2025-11-28 11:04:39,606 | INFO     | mean x: 1764306019.6499302
[2025-11-28 06:05:12] 2025-11-28 11:04:39,607 | INFO     | mean y: 3257555.9177126917
[2025-11-28 06:05:12] 2025-11-28 11:04:39,607 | INFO     | intersect: -8378940480.990023
[2025-11-28 06:05:12] 2025-11-28 11:04:39,608 | INFO     | chi2: 4.720147896848235
[2025-11-28 06:05:12] 2025-11-28 11:04:39,608 | INFO     | current chi2=4.720147896848235 (change=34.485296321347306 %)
[2025-11-28 06:05:12] 2025-11-28 11:04:39,608 | INFO     | sum of square deviations: 111921937499.0051
[2025-11-28 06:05:12] 2025-11-28 11:04:39,621 | INFO     | sum of deviations: 496509426913.3202
[2025-11-28 06:05:12] 2025-11-28 11:04:39,621 | INFO     | mean x: 1764306172.1544943
[2025-11-28 06:05:12] 2025-11-28 11:04:39,621 | INFO     | mean y: 3260541.3061797754
[2025-11-28 06:05:12] 2025-11-28 11:04:39,622 | INFO     | intersect: -7823575430.3624525
[2025-11-28 06:05:12] 2025-11-28 11:04:39,622 | INFO     | chi2: 4.677106896362849
[2025-11-28 06:05:12] 2025-11-28 11:04:39,622 | INFO     | current chi2=4.677106896362849 (change=0.9118570313045743 %)
[2025-11-28 06:05:12] 2025-11-28 11:04:39,622 | INFO     | left removable region: 20
[2025-11-28 06:05:12] 2025-11-28 11:04:39,623 | INFO     | sum of square deviations: 102308170717.77666
[2025-11-28 06:05:12] 2025-11-28 11:04:39,633 | INFO     | sum of deviations: 843674614046.3975
[2025-11-28 06:05:12] 2025-11-28 11:04:39,633 | INFO     | mean x: 1764306141.6657019
[2025-11-28 06:05:12] 2025-11-28 11:04:39,633 | INFO     | mean y: 3292217.5947901593
[2025-11-28 06:05:12] 2025-11-28 11:04:39,633 | INFO     | intersect: -14545890830.899145
[2025-11-28 06:05:12] 2025-11-28 11:04:39,634 | INFO     | chi2: 0.14888255196022387
[2025-11-28 06:05:12] 2025-11-28 11:04:39,634 | INFO     | current memory leak: 8.25 B/s (using 691 data points, chi2=0.15)
[2025-11-28 06:05:12] 2025-11-28 11:04:39,635 | INFO     | could have reported an average CPU frequency of 2138 MHz (28 samples)
[2025-11-28 06:05:12] 2025-11-28 11:04:39,635 | INFO     | ..............................
[2025-11-28 06:05:12] 2025-11-28 11:04:39,635 | INFO     | . Timing measurements:
[2025-11-28 06:05:12] 2025-11-28 11:04:39,635 | INFO     | . get job = 0 s
[2025-11-28 06:05:12] 2025-11-28 11:04:39,635 | INFO     | . initial setup = 2 s
[2025-11-28 06:05:12] 2025-11-28 11:04:39,636 | INFO     | . payload setup = 9 s
[2025-11-28 06:05:12] 2025-11-28 11:04:39,636 | INFO     | . stage-in = 0 s
[2025-11-28 06:05:12] 2025-11-28 11:04:39,636 | INFO     | . payload execution = 43991 s
[2025-11-28 06:05:12] 2025-11-28 11:04:39,636 | INFO     | . stage-out = 3 s
[2025-11-28 06:05:12] 2025-11-28 11:04:39,636 | INFO     | . log creation = 0 s
[2025-11-28 06:05:12] 2025-11-28 11:04:39,636 | INFO     | ..............................
[2025-11-28 06:05:12] 2025-11-28 11:04:39,724 | INFO     | 
[2025-11-28 06:05:12] 2025-11-28 11:04:39,724 | INFO     | job summary report
[2025-11-28 06:05:12] 2025-11-28 11:04:39,725 | INFO     | --------------------------------------------------
[2025-11-28 06:05:12] 2025-11-28 11:04:39,725 | INFO     | PanDA job id: 6898489540
[2025-11-28 06:05:12] 2025-11-28 11:04:39,725 | INFO     | task id: 47556161
[2025-11-28 06:05:12] 2025-11-28 11:04:39,725 | INFO     | errors: (none)
[2025-11-28 06:05:12] 2025-11-28 11:04:39,725 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-28 06:05:12] 2025-11-28 11:04:39,725 | INFO     | pilot state: finished 
[2025-11-28 06:05:12] 2025-11-28 11:04:39,726 | INFO     | transexitcode: 0
[2025-11-28 06:05:12] 2025-11-28 11:04:39,726 | INFO     | exeerrorcode: 0
[2025-11-28 06:05:12] 2025-11-28 11:04:39,726 | INFO     | exeerrordiag: 
[2025-11-28 06:05:12] 2025-11-28 11:04:39,726 | INFO     | exitcode: 0
[2025-11-28 06:05:12] 2025-11-28 11:04:39,726 | INFO     | exitmsg: OK
[2025-11-28 06:05:12] 2025-11-28 11:04:39,726 | INFO     | cpuconsumptiontime: 341101 s
[2025-11-28 06:05:12] 2025-11-28 11:04:39,727 | INFO     | nevents: 1000
[2025-11-28 06:05:12] 2025-11-28 11:04:39,727 | INFO     | neventsw: 0
[2025-11-28 06:05:12] 2025-11-28 11:04:39,727 | INFO     | pid: 8824
[2025-11-28 06:05:12] 2025-11-28 11:04:39,727 | INFO     | pgrp: 8824
[2025-11-28 06:05:12] 2025-11-28 11:04:39,727 | INFO     | corecount: 8
[2025-11-28 06:05:12] 2025-11-28 11:04:39,727 | INFO     | event service: False
[2025-11-28 06:05:12] 2025-11-28 11:04:39,728 | INFO     | sizes: {0: 2284145, 1: 2284344, 7: 2284606, 11: 2284634, 44004: 2330223, 44008: 2339217, 44011: 2339401, 44019: 2339647}
[2025-11-28 06:05:12] 2025-11-28 11:04:39,728 | INFO     | --------------------------------------------------
[2025-11-28 06:05:12] 2025-11-28 11:04:39,728 | INFO     | 
[2025-11-28 06:05:12] 2025-11-28 11:04:39,728 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-28 06:05:12] 2025-11-28 11:04:39,757 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-28 06:05:12] 2025-11-28 11:04:39,757 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-28 06:05:12] 2025-11-28 11:04:39,758 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-28 06:05:12] 2025-11-28 11:04:39,758 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-28 06:05:12] 2025-11-28 11:04:39,758 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-28 06:05:12] 2025-11-28 11:04:39,758 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-28 06:05:12] 2025-11-28 11:04:39,758 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-28 06:05:12] 2025-11-28 11:04:39,758 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-28 06:05:12] 2025-11-28 11:04:39,759 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-28 06:05:12] 2025-11-28 11:04:39,759 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-28 06:05:12] 2025-11-28 11:04:39,759 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-28 06:05:12] 2025-11-28 11:04:39,759 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-28 06:05:12] 2025-11-28 11:04:39,759 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-28 06:05:12] 2025-11-28 11:04:39,760 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-28 06:05:12] 2025-11-28 11:04:39,760 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-28 06:05:12] 2025-11-28 11:04:39,760 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-28 06:05:12] 2025-11-28 11:04:39,760 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-28 06:05:12] 2025-11-28 11:04:39,760 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-28 06:05:12] 2025-11-28 11:04:39,760 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-28 06:05:12] 2025-11-28 11:04:39,761 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-28 06:05:12] 2025-11-28 11:04:39,761 | INFO     | job 6898489540 has completed (purged errors)
[2025-11-28 06:05:12] 2025-11-28 11:04:39,761 | INFO     | overall cleanup function is called
[2025-11-28 06:05:12] 2025-11-28 11:04:40,777 | INFO     | --- collectZombieJob: --- 10, [8824]
[2025-11-28 06:05:12] 2025-11-28 11:04:40,777 | INFO     | zombie collector waiting for pid 8824
[2025-11-28 06:05:12] 2025-11-28 11:04:40,777 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-28 06:05:12] 2025-11-28 11:04:40,777 | INFO     | collected zombie processes
[2025-11-28 06:05:12] 2025-11-28 11:04:40,777 | INFO     | will attempt to kill all subprocesses of pid=8824
[2025-11-28 06:05:12] 2025-11-28 11:04:40,866 | INFO     | process IDs to be killed: [8824] (in reverse order)
[2025-11-28 06:05:12] 2025-11-28 11:04:40,928 | WARNING  | found no corresponding commands to process id(s)
[2025-11-28 06:05:12] 2025-11-28 11:04:40,929 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-28 06:05:12] 2025-11-28 11:04:40,933 | INFO     | did not find any defunct processes belonging to 8824
[2025-11-28 06:05:12] 2025-11-28 11:04:40,937 | INFO     | did not find any defunct processes belonging to 8824
[2025-11-28 06:05:12] 2025-11-28 11:04:40,940 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 06:05:12] 2025-11-28 11:04:40,940 | INFO     | ready for new job
[2025-11-28 06:05:12] 2025-11-28 11:04:40,940 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 06:05:12] 2025-11-28 11:04:40,943 | INFO     | ***************************************
[2025-11-28 06:05:12] 2025-11-28 11:04:40,944 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 06:05:12] 2025-11-28 11:04:40,944 | INFO     | ***************************************
[2025-11-28 06:05:12] 2025-11-28 11:04:40,944 | INFO     | 
[2025-11-28 06:05:12] 2025-11-28 11:04:40,944 | INFO     | architecture information:
[2025-11-28 06:05:12] 2025-11-28 11:04:40,945 | INFO     | executing command: cat /etc/os-release
[2025-11-28 06:05:12] 2025-11-28 11:04:40,964 | INFO     | cat /etc/os-release:
[2025-11-28 06:05:12] NAME="CentOS Linux"
[2025-11-28 06:05:12] VERSION="7 (Core)"
[2025-11-28 06:05:12] ID="centos"
[2025-11-28 06:05:12] ID_LIKE="rhel fedora"
[2025-11-28 06:05:12] VERSION_ID="7"
[2025-11-28 06:05:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 06:05:12] ANSI_COLOR="0;31"
[2025-11-28 06:05:12] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 06:05:12] HOME_URL="https://www.centos.org/"
[2025-11-28 06:05:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 06:05:12] 
[2025-11-28 06:05:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 06:05:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 06:05:12] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 06:05:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 06:05:12] 
[2025-11-28 06:05:12] 2025-11-28 11:04:40,964 | INFO     | ***************************************
[2025-11-28 06:05:12] 2025-11-28 11:04:41,467 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-28 06:05:12] 2025-11-28 11:04:41,488 | INFO     | sufficient remaining disk space (17439916032 B)
[2025-11-28 06:05:12] 2025-11-28 11:04:41,488 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 06:05:12] 2025-11-28 11:04:41,489 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 06:05:12] 2025-11-28 11:04:41,489 | INFO     | update_server=False
[2025-11-28 06:05:12] 2025-11-28 11:04:41,489 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 06:05:12] 2025-11-28 11:04:41,490 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 06:05:12] 2025-11-28 11:04:41,490 | INFO     | aborting loop
[2025-11-28 06:05:12] 2025-11-28 11:04:41,490 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 06:05:12] 2025-11-28 11:04:41,540 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 06:05:12] 2025-11-28 11:04:41,593 | INFO     | all job control threads have been joined
[2025-11-28 06:05:12] 2025-11-28 11:04:42,046 | INFO     | all data control threads have been joined
[2025-11-28 06:05:12] 2025-11-28 11:04:42,495 | INFO     | [job] retrieve thread has finished
[2025-11-28 06:05:12] 2025-11-28 11:04:42,496 | INFO     | [job] queue monitor thread has finished
[2025-11-28 06:05:12] 2025-11-28 11:04:42,497 | INFO     | [job] job monitor thread has finished
[2025-11-28 06:05:12] 2025-11-28 11:04:42,569 | INFO     | [job] validate thread has finished
[2025-11-28 06:05:12] 2025-11-28 11:04:42,598 | INFO     | [job] control thread has finished
[2025-11-28 06:05:12] 2025-11-28 11:04:42,624 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 06:05:12] 2025-11-28 11:04:42,755 | INFO     | all payload control threads have been joined
[2025-11-28 06:05:12] 2025-11-28 11:04:43,057 | INFO     | [data] control thread has finished
[2025-11-28 06:05:12] 2025-11-28 11:04:43,064 | INFO     | [payload] validate_post thread has finished
[2025-11-28 06:05:12] 2025-11-28 11:04:43,067 | INFO     | [data] copytool_in thread has finished
[2025-11-28 06:05:12] 2025-11-28 11:04:43,170 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 06:05:12] 2025-11-28 11:04:43,364 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 06:05:12] 2025-11-28 11:04:43,541 | INFO     | [data] copytool_out thread has finished
[2025-11-28 06:05:12] 2025-11-28 11:04:43,760 | INFO     | [payload] control thread has finished
[2025-11-28 06:05:12] 2025-11-28 11:04:43,844 | INFO     | [payload] failed_post thread has finished
[2025-11-28 06:05:12] 2025-11-28 11:04:43,918 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 06:05:12] 2025-11-28 11:04:46,628 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 06:05:12] 2025-11-28 11:04:51,842 | INFO     | job.realtimelogging is not enabled
[2025-11-28 06:05:12] 2025-11-28 11:04:52,848 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 06:05:12] 2025-11-28 11:04:56,077 | INFO     | [monitor] cgroup control has ended
[2025-11-28 06:05:12] 2025-11-28 11:04:57,149 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140280343938880)>', '<ExcThread(monitor, started 140279889762048)>']
[2025-11-28 06:05:12] 2025-11-28 11:05:02,169 | INFO     | all workflow threads have been joined
[2025-11-28 06:05:12] 2025-11-28 11:05:02,169 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 06:05:12] 2025-11-28 11:05:02,170 | INFO     | traces error code: 0
[2025-11-28 06:05:12] 2025-11-28 11:05:02,170 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 06:05:12] 2025-11-28 11:05:12,045 | INFO     | PID=2314 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-28 06:05:12] 2025-11-28 11:05:12,047 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 06:05:12] 2025-11-28 11:05:12,047 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 06:05:12] 2025-11-28 11:05:12,047 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 06:05:12] 2025-11-28 11:05:12,047 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 06:05:12] 2025-11-28 11:05:12,047 | INFO     | [monitor] control thread has ended
[2025-11-28 06:05:12] 2025-11-28 11:05:12,164 [wrapper] ==== pilot stdout END ====
[2025-11-28 06:05:12] 2025-11-28 11:05:12,169 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 06:05:12] 2025-11-28 11:05:12,173 [wrapper] pilotpid: 2314
[2025-11-28 06:05:12] 2025-11-28 11:05:12,178 [wrapper] Pilot exit status: 0
[2025-11-28 06:05:12] 2025-11-28 11:05:12,194 [wrapper] pandaids: 6898489540 6898489540
[2025-11-28 06:05:12] 2025-11-28 11:05:12,239 [wrapper] cleanup supervisor_pilot 31882 2315
[2025-11-28 06:05:12] 2025-11-28 11:05:12,244 [wrapper] Test setup, not cleaning
[2025-11-28 06:05:12] 2025-11-28 11:05:12,248 [wrapper] apfmon messages muted
[2025-11-28 06:05:12] 2025-11-28 11:05:12,253 [wrapper] ==== wrapper stdout END ====
[2025-11-28 06:05:12] 2025-11-28 11:05:12,258 [wrapper] ==== wrapper stderr END ====
[2025-11-28 06:05:12]  *** Error codes and diagnostics ***
[2025-11-28 06:05:12]     "exeErrorCode": 0,
[2025-11-28 06:05:12]     "exeErrorDiag": "",
[2025-11-28 06:05:12]     "pilotErrorCode": 0,
[2025-11-28 06:05:12]     "pilotErrorDiag": "",
[2025-11-28 06:05:12]  *** Listing of results directory ***
[2025-11-28 06:05:12] total 1715060
[2025-11-28 06:05:12] drwx------ 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-28 06:05:12] -rw-r--r-- 1 boincer umatlas    576529 Nov 26 11:12 pilot3.tar.gz
[2025-11-28 06:05:12] -rwx------ 1 boincer umatlas     36292 Nov 26 11:36 runpilot2-wrapper.sh
[2025-11-28 06:05:12] -rw-r--r-- 1 boincer umatlas      5112 Nov 26 11:37 queuedata.json
[2025-11-28 06:05:12] -rw-r--r-- 1 boincer umatlas       100 Nov 27 14:21 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 06:05:12] -rwxr-xr-x 1 boincer umatlas      7986 Nov 27 14:21 run_atlas
[2025-11-28 06:05:12] -rw-r--r-- 1 boincer umatlas       105 Nov 27 14:21 job.xml
[2025-11-28 06:05:12] -rw-r--r-- 3 boincer umatlas 410738423 Nov 27 14:21 EVNT.47483658._002646.pool.root.1
[2025-11-28 06:05:12] -rw-r--r-- 3 boincer umatlas 410738423 Nov 27 14:21 ATLAS.root_0
[2025-11-28 06:05:12] -rw-r--r-- 2 boincer umatlas    590111 Nov 27 14:21 input.tar.gz
[2025-11-28 06:05:12] -rw-r--r-- 2 boincer umatlas     15847 Nov 27 14:21 start_atlas.sh
[2025-11-28 06:05:12] drwxrwx--x 2 boincer umatlas      4096 Nov 27 14:21 shared
[2025-11-28 06:05:12] -rw-r--r-- 1 boincer umatlas         0 Nov 27 14:21 boinc_lockfile
[2025-11-28 06:05:12] -rw-r--r-- 1 boincer umatlas      2787 Nov 27 17:50 pandaJob.out
[2025-11-28 06:05:12] -rw------- 1 boincer umatlas        57 Nov 27 17:50 setup.sh.local
[2025-11-28 06:05:12] -rw------- 1 boincer umatlas    991532 Nov 27 17:50 agis_schedconf.cvmfs.json
[2025-11-28 06:05:12] -rw-r--r-- 1 boincer umatlas       532 Nov 28 05:51 boinc_task_state.xml
[2025-11-28 06:05:12] -rw-r--r-- 1 boincer umatlas      5913 Nov 28 06:01 init_data.xml
[2025-11-28 06:05:12] -rw------- 1 boincer umatlas 914771284 Nov 28 06:03 HITS.47556161._006283.pool.root.1
[2025-11-28 06:05:12] -rw------- 1 boincer umatlas      1062 Nov 28 06:04 memory_monitor_summary.json
[2025-11-28 06:05:12] -rw------- 1 boincer umatlas   1516240 Nov 28 06:04 agis_ddmendpoints.agis.ALL.json
[2025-11-28 06:05:12] -rw------- 1 boincer umatlas   1973755 Nov 28 06:04 log.47556161._006283.job.log.tgz.1
[2025-11-28 06:05:12] -rw------- 1 boincer umatlas      8673 Nov 28 06:04 heartbeat.json
[2025-11-28 06:05:12] -rw-r--r-- 1 boincer umatlas      8192 Nov 28 06:04 boinc_mmap_file
[2025-11-28 06:05:12] -rw-r--r-- 1 boincer umatlas        29 Nov 28 06:04 wrapper_checkpoint.txt
[2025-11-28 06:05:12] -rw------- 1 boincer umatlas        96 Nov 28 06:05 pilot_heartbeat.json
[2025-11-28 06:05:12] -rw------- 1 boincer umatlas       744 Nov 28 06:05 pilotlog.txt
[2025-11-28 06:05:12] -rw------- 1 boincer umatlas   6053418 Nov 28 06:05 log.47556161._006283.job.log.1
[2025-11-28 06:05:12] -rw------- 1 boincer umatlas       353 Nov 28 06:05 output.list
[2025-11-28 06:05:12] -rw-r--r-- 1 boincer umatlas       620 Nov 28 06:05 runtime_log
[2025-11-28 06:05:12] -rw------- 1 boincer umatlas   8048640 Nov 28 06:05 result.tar.gz
[2025-11-28 06:05:12] -rw-r--r-- 1 boincer umatlas      9428 Nov 28 06:05 runtime_log.err
[2025-11-28 06:05:12] -rw------- 1 boincer umatlas       793 Nov 28 06:05 NzIODm2fXi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmIDNKDm5u4wnm.diag
[2025-11-28 06:05:12] -rw-r--r-- 1 boincer umatlas     23434 Nov 28 06:05 stderr.txt
[2025-11-28 06:05:12] HITS file was successfully produced:
[2025-11-28 06:05:12] -rw------- 1 boincer umatlas 914771284 Nov 28 06:03 shared/HITS.pool.root.1
[2025-11-28 06:05:12]  *** Contents of shared directory: ***
[2025-11-28 06:05:12] total 1302908
[2025-11-28 06:05:12] -rw-r--r-- 3 boincer umatlas 410738423 Nov 27 14:21 ATLAS.root_0
[2025-11-28 06:05:12] -rw-r--r-- 2 boincer umatlas    590111 Nov 27 14:21 input.tar.gz
[2025-11-28 06:05:12] -rw-r--r-- 2 boincer umatlas     15847 Nov 27 14:21 start_atlas.sh
[2025-11-28 06:05:12] -rw------- 1 boincer umatlas 914771284 Nov 28 06:03 HITS.pool.root.1
[2025-11-28 06:05:12] -rw------- 1 boincer umatlas   8048640 Nov 28 06:05 result.tar.gz
06:05:13 (30997): run_atlas exited; CPU time 338826.560770
06:05:13 (30997): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN