Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
09:22:01 (3436520): wrapper (7.7.26015): starting
09:22:01 (3436520): wrapper: running run_atlas (--nthreads 12)
[2025-11-27 09:22:02] Arguments: --nthreads 12
[2025-11-27 09:22:02] Threads: 12
[2025-11-27 09:22:02] Checking for CVMFS
[2025-11-27 09:22:02] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 09:22:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 09:22:03] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 09:22:04] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 09:22:04] 2.11.5.0 2081521 30076 216440 153377 1 125 23335214 45568001 30770 130560 0 197262539 99.797 124157907 20046 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-11-27 09:22:04] CVMFS is ok
[2025-11-27 09:22:04] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 09:22:04] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 09:22:04] Further information can be found at the LHC@home message board.
[2025-11-27 09:22:04] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 09:22:04] Checking for apptainer binary...
[2025-11-27 09:22:04] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 09:22:04] Running /usr/bin/apptainer --version
[2025-11-27 09:22:05] apptainer version 1.4.1-1.el9
[2025-11-27 09:22:05] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 09:22:06] wns0041.triumf.lcg
[2025-11-27 09:22:06] apptainer works
[2025-11-27 09:22:06] Set ATHENA_PROC_NUMBER=12
[2025-11-27 09:22:06] Set ATHENA_CORE_NUMBER=12
[2025-11-27 09:22:06] Starting ATLAS job with PandaID=6894239599
[2025-11-27 09:22:06] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 09:32:43]  *** The last 200 lines of the pilot log: ***
[2025-11-27 09:32:43] 2025-11-27 17:32:06,176 | INFO     | could have reported an average CPU frequency of 1371 MHz (4 samples)
[2025-11-27 09:32:43] 2025-11-27 17:32:06,176 | INFO     | ..............................
[2025-11-27 09:32:43] 2025-11-27 17:32:06,176 | INFO     | . Timing measurements:
[2025-11-27 09:32:43] 2025-11-27 17:32:06,176 | INFO     | . get job = 0 s
[2025-11-27 09:32:43] 2025-11-27 17:32:06,176 | INFO     | . initial setup = 4 s
[2025-11-27 09:32:43] 2025-11-27 17:32:06,176 | INFO     | . payload setup = 42 s
[2025-11-27 09:32:43] 2025-11-27 17:32:06,176 | INFO     | . stage-in = 0 s
[2025-11-27 09:32:43] 2025-11-27 17:32:06,176 | INFO     | . payload execution = 225 s
[2025-11-27 09:32:43] 2025-11-27 17:32:06,176 | INFO     | . stage-out = 1 s
[2025-11-27 09:32:43] 2025-11-27 17:32:06,177 | INFO     | . log creation = 0 s
[2025-11-27 09:32:43] 2025-11-27 17:32:06,177 | INFO     | ..............................
[2025-11-27 09:32:43] 2025-11-27 17:32:06,177 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-27 09:32:43] 2025-11-27 17:32:06,177 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6894239599/pilotlog.txt
[2025-11-27 09:32:43] 2025-11-27 17:32:06,340 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-27 09:32:43] - Log from pilotlog.txt -
[2025-11-27 09:32:43] 2025-11-27 17:32:06,168 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6894239599/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 09:32:43] 2025-11-27 17:32:06,169 | INFO     | extracted standard info from prmon json
[2025-11-27 09:32:43] 2025-11-27 17:32:06,169 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 09:32:43] 2025-11-27 17:32:06,169 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 09:32:43] 2025-11-27 17:32:06,170 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-27 09:32:43] 2025-11-27 17:32:06,170 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-27 09:32:43] 2025-11-27 17:32:06,175 | WARNING  | wrong length of table data, x=[1764264374.0, 1764264435.0, 1764264496.0], y=[2682.0, 398891.0, 370304.0] (must be same and length>=4)
[2025-11-27 09:32:43] 2025-11-27 17:32:06,176 | INFO     | could have reported an average CPU frequency of 1371 MHz (4 samples)
[2025-11-27 09:32:43] 2025-11-27 17:32:06,176 | INFO     | ..............................
[2025-11-27 09:32:43] 2025-11-27 17:32:06,176 | INFO     | . Timing measurements:
[2025-11-27 09:32:43] 2025-11-27 17:32:06,176 | INFO     | . get job = 0 s
[2025-11-27 09:32:43] 2025-11-27 17:32:06,176 | INFO     | . initial setup = 4 s
[2025-11-27 09:32:43] 2025-11-27 17:32:06,176 | INFO     | . payload setup = 42 s
[2025-11-27 09:32:43] 2025-11-27 17:32:06,176 | INFO     | . stage-in = 0 s
[2025-11-27 09:32:43] 2025-11-27 17:32:06,176 | INFO     | . payload execution = 225 s
[2025-11-27 09:32:43] 2025-11-27 17:32:06,176 | INFO     | . stage-out = 1 s
[2025-11-27 09:32:43] 2025-11-27 17:32:06,177 | INFO     | . log creation = 0 s
[2025-11-27 09:32:43] 2025-11-27 17:32:06,177 | INFO     | ..............................
[2025-11-27 09:32:43] 2025-11-27 17:32:06,177 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-27 09:32:43] 2025-11-27 17:32:06,177 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6894239599/pilotlog.txt
[2025-11-27 09:32:43] 2025-11-27 17:32:06,341 | WARNING  | 
[2025-11-27 09:32:43] [begin log extracts]
[2025-11-27 09:32:43] - Log from pilotlog.txt -
[2025-11-27 09:32:43] 2025-11-27 17:32:06,168 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6894239599/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 09:32:43] 2025-11-27 17:32:06,169 | INFO     | extracted standard info from prmon json
[2025-11-27 09:32:43] 2025-11-27 17:32:06,169 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 09:32:43] 2025-11-27 17:32:06,169 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 09:32:43] 2025-11-27 17:32:06,170 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-27 09:32:43] 2025-11-27 17:32:06,170 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-27 09:32:43] 2025-11-27 17:32:06,175 | WARNING  | wrong length of table data, x=[1764264374.0, 1764264435.0, 1764264496.0], y=[2682.0, 398891.0, 370304.0] (must be same and length>=4)
[2025-11-27 09:32:43] 2025-11-27 17:32:06,176 | INFO     | could have reported an average CPU frequency of 1371 MHz (4 samples)
[2025-11-27 09:32:43] 2025-11-27 17:32:06,176 | INFO     | ..............................
[2025-11-27 09:32:43] 2025-11-27 17:32:06,176 | INFO     | . Timing measurements:
[2025-11-27 09:32:43] 2025-11-27 17:32:06,176 | INFO     | . get job = 0 s
[2025-11-27 09:32:43] 2025-11-27 17:32:06,176 | INFO     | . initial setup = 4 s
[2025-11-27 09:32:43] 2025-11-27 17:32:06,176 | INFO     | . payload setup = 42 s
[2025-11-27 09:32:43] 2025-11-27 17:32:06,176 | INFO     | . stage-in = 0 s
[2025-11-27 09:32:43] 2025-11-27 17:32:06,176 | INFO     | . payload execution = 225 s
[2025-11-27 09:32:43] 2025-11-27 17:32:06,176 | INFO     | . stage-out = 1 s
[2025-11-27 09:32:43] 2025-11-27 17:32:06,177 | INFO     | . log creation = 0 s
[2025-11-27 09:32:43] 2025-11-27 17:32:06,177 | INFO     | ..............................
[2025-11-27 09:32:43] 2025-11-27 17:32:06,177 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-27 09:32:43] 2025-11-27 17:32:06,177 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6894239599/pilotlog.txt
[2025-11-27 09:32:43] [end log extracts]
[2025-11-27 09:32:43] 2025-11-27 17:32:06,341 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-27 09:32:43] 2025-11-27 17:32:06,342 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-27 09:32:43] 2025-11-27 17:32:06,632 | INFO     | 
[2025-11-27 09:32:43] 2025-11-27 17:32:06,632 | INFO     | job summary report
[2025-11-27 09:32:43] 2025-11-27 17:32:06,632 | INFO     | --------------------------------------------------
[2025-11-27 09:32:43] 2025-11-27 17:32:06,632 | INFO     | PanDA job id: 6894239599
[2025-11-27 09:32:43] 2025-11-27 17:32:06,632 | INFO     | task id: 47533962
[2025-11-27 09:32:43] 2025-11-27 17:32:06,633 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-27 09:29:08,627 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-27 09:32:43] 2025-11-27 17:32:06,633 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-27 09:32:43] 2025-11-27 17:32:06,633 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 09:32:43] 2025-11-27 17:32:06,633 | INFO     | pilot state: failed 
[2025-11-27 09:32:43] 2025-11-27 17:32:06,633 | INFO     | transexitcode: 65
[2025-11-27 09:32:43] 2025-11-27 17:32:06,633 | INFO     | exeerrorcode: 65
[2025-11-27 09:32:43] 2025-11-27 17:32:06,633 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2025-11-27 09:32:43] 2025-11-27 17:32:06,634 | INFO     | exitcode: 65
[2025-11-27 09:32:43] 2025-11-27 17:32:06,634 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2025-11-27 09:32:43] 2025-11-27 17:32:06,634 | INFO     | cpuconsumptiontime: 74 s
[2025-11-27 09:32:43] 2025-11-27 17:32:06,635 | INFO     | nevents: 0
[2025-11-27 09:32:43] 2025-11-27 17:32:06,635 | INFO     | neventsw: 0
[2025-11-27 09:32:43] 2025-11-27 17:32:06,635 | INFO     | pid: 3448014
[2025-11-27 09:32:43] 2025-11-27 17:32:06,635 | INFO     | pgrp: 3448014
[2025-11-27 09:32:43] 2025-11-27 17:32:06,635 | INFO     | corecount: 12
[2025-11-27 09:32:43] 2025-11-27 17:32:06,635 | INFO     | event service: False
[2025-11-27 09:32:43] 2025-11-27 17:32:06,635 | INFO     | sizes: {0: 2284141, 1: 2284340, 2: 2284340, 3: 2284368, 14: 2284396, 26: 2284424, 37: 2284580, 39: 2284870, 48: 2284898, 269: 2310374, 270: 2310378, 272: 2315004, 
[2025-11-27 09:32:43] 2025-11-27 17:32:06,635 | INFO     | --------------------------------------------------
[2025-11-27 09:32:43] 2025-11-27 17:32:06,635 | INFO     | 
[2025-11-27 09:32:43] 2025-11-27 17:32:06,635 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-27 09:32:43] 2025-11-27 17:32:06,903 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 09:32:43] 2025-11-27 17:32:06,904 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 09:32:43] 2025-11-27 17:32:06,904 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 09:32:43] 2025-11-27 17:32:06,904 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 09:32:43] 2025-11-27 17:32:06,904 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 09:32:43] 2025-11-27 17:32:06,904 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 09:32:43] 2025-11-27 17:32:06,904 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 09:32:43] 2025-11-27 17:32:06,904 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 09:32:43] 2025-11-27 17:32:06,905 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 09:32:43] 2025-11-27 17:32:06,905 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 09:32:43] 2025-11-27 17:32:06,905 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 09:32:43] 2025-11-27 17:32:06,905 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 09:32:43] 2025-11-27 17:32:06,905 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 09:32:43] 2025-11-27 17:32:06,905 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 09:32:43] 2025-11-27 17:32:06,905 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 09:32:43] 2025-11-27 17:32:06,905 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 09:32:43] 2025-11-27 17:32:06,905 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 09:32:43] 2025-11-27 17:32:06,905 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 09:32:43] 2025-11-27 17:32:06,905 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 09:32:43] 2025-11-27 17:32:06,906 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 09:32:43] 2025-11-27 17:32:06,906 | INFO     | job 6894239599 has completed (purged errors)
[2025-11-27 09:32:43] 2025-11-27 17:32:06,906 | INFO     | overall cleanup function is called
[2025-11-27 09:32:43] 2025-11-27 17:32:07,074 | INFO     | PID=3440650 has CPU usage=3.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 09:32:43] 2025-11-27 17:32:07,074 | INFO     | .. there are 42 such processes running
[2025-11-27 09:32:43] 2025-11-27 17:32:07,926 | INFO     | --- collectZombieJob: --- 10, [3448014]
[2025-11-27 09:32:43] 2025-11-27 17:32:07,926 | INFO     | zombie collector waiting for pid 3448014
[2025-11-27 09:32:43] 2025-11-27 17:32:07,926 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 09:32:43] 2025-11-27 17:32:07,926 | INFO     | collected zombie processes
[2025-11-27 09:32:43] 2025-11-27 17:32:07,926 | INFO     | will attempt to kill all subprocesses of pid=3448014
[2025-11-27 09:32:43] 2025-11-27 17:32:08,800 | INFO     | process IDs to be killed: [3448014] (in reverse order)
[2025-11-27 09:32:43] 2025-11-27 17:32:09,073 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 09:32:43] 2025-11-27 17:32:09,073 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 09:32:43] 2025-11-27 17:32:09,178 | INFO     | did not find any defunct processes belonging to 3448014
[2025-11-27 09:32:43] 2025-11-27 17:32:09,226 | INFO     | did not find any defunct processes belonging to 3448014
[2025-11-27 09:32:43] 2025-11-27 17:32:09,227 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 09:32:43] 2025-11-27 17:32:09,228 | INFO     | ready for new job
[2025-11-27 09:32:43] 2025-11-27 17:32:09,228 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 09:32:43] 2025-11-27 17:32:09,230 | INFO     | ***************************************
[2025-11-27 09:32:43] 2025-11-27 17:32:09,230 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 09:32:43] 2025-11-27 17:32:09,230 | INFO     | ***************************************
[2025-11-27 09:32:43] 2025-11-27 17:32:09,230 | INFO     | 
[2025-11-27 09:32:43] 2025-11-27 17:32:09,233 | INFO     | architecture information:
[2025-11-27 09:32:43] 2025-11-27 17:32:09,234 | INFO     | executing command: cat /etc/os-release
[2025-11-27 09:32:43] 2025-11-27 17:32:09,253 | INFO     | cat /etc/os-release:
[2025-11-27 09:32:43] NAME="CentOS Linux"
[2025-11-27 09:32:43] VERSION="7 (Core)"
[2025-11-27 09:32:43] ID="centos"
[2025-11-27 09:32:43] ID_LIKE="rhel fedora"
[2025-11-27 09:32:43] VERSION_ID="7"
[2025-11-27 09:32:43] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 09:32:43] ANSI_COLOR="0;31"
[2025-11-27 09:32:43] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 09:32:43] HOME_URL="https://www.centos.org/"
[2025-11-27 09:32:43] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 09:32:43] 
[2025-11-27 09:32:43] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 09:32:43] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 09:32:43] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 09:32:43] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 09:32:43] 
[2025-11-27 09:32:43] 2025-11-27 17:32:09,254 | INFO     | ***************************************
[2025-11-27 09:32:43] 2025-11-27 17:32:09,757 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-27 09:32:43] 2025-11-27 17:32:09,914 | INFO     | sufficient remaining disk space (1792413794304 B)
[2025-11-27 09:32:43] 2025-11-27 17:32:09,914 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 09:32:43] 2025-11-27 17:32:09,914 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 09:32:43] 2025-11-27 17:32:09,914 | INFO     | update_server=False
[2025-11-27 09:32:43] 2025-11-27 17:32:09,914 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 09:32:43] 2025-11-27 17:32:09,916 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 09:32:43] 2025-11-27 17:32:09,916 | INFO     | aborting loop
[2025-11-27 09:32:43] 2025-11-27 17:32:09,931 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 09:32:43] 2025-11-27 17:32:10,290 | INFO     | all data control threads have been joined
[2025-11-27 09:32:43] 2025-11-27 17:32:10,920 | INFO     | [job] retrieve thread has finished
[2025-11-27 09:32:43] 2025-11-27 17:32:10,922 | INFO     | [job] job monitor thread has finished
[2025-11-27 09:32:43] 2025-11-27 17:32:11,107 | INFO     | all job control threads have been joined
[2025-11-27 09:32:43] 2025-11-27 17:32:11,283 | INFO     | [payload] failed_post thread has finished
[2025-11-27 09:32:43] 2025-11-27 17:32:11,296 | INFO     | [data] control thread has finished
[2025-11-27 09:32:43] 2025-11-27 17:32:11,310 | INFO     | all payload control threads have been joined
[2025-11-27 09:32:43] 2025-11-27 17:32:11,319 | INFO     | [data] copytool_in thread has finished
[2025-11-27 09:32:43] 2025-11-27 17:32:11,376 | INFO     | [payload] validate_post thread has finished
[2025-11-27 09:32:43] 2025-11-27 17:32:11,476 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 09:32:43] 2025-11-27 17:32:11,641 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 09:32:43] 2025-11-27 17:32:11,732 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 09:32:43] 2025-11-27 17:32:11,938 | INFO     | [data] copytool_out thread has finished
[2025-11-27 09:32:43] 2025-11-27 17:32:11,979 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 09:32:43] 2025-11-27 17:32:12,113 | INFO     | [job] control thread has finished
[2025-11-27 09:32:43] 2025-11-27 17:32:12,222 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 09:32:43] 2025-11-27 17:32:12,223 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 09:32:43] 2025-11-27 17:32:12,238 | INFO     | [job] validate thread has finished
[2025-11-27 09:32:43] 2025-11-27 17:32:12,316 | INFO     | [payload] control thread has finished
[2025-11-27 09:32:43] 2025-11-27 17:32:12,647 | INFO     | [job] queue monitor thread has finished
[2025-11-27 09:32:43] 2025-11-27 17:32:16,232 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 09:32:43] 2025-11-27 17:32:22,618 | INFO     | [monitor] cgroup control has ended
[2025-11-27 09:32:43] 2025-11-27 17:32:23,740 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140610169677632)>', '<ExcThread(monitor, started 140608882591488)>']
[2025-11-27 09:32:43] 2025-11-27 17:32:28,766 | INFO     | all workflow threads have been joined
[2025-11-27 09:32:43] 2025-11-27 17:32:28,766 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 09:32:43] 2025-11-27 17:32:28,767 | INFO     | traces error code: 0
[2025-11-27 09:32:43] 2025-11-27 17:32:28,767 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 09:32:43] 2025-11-27 17:32:41,434 | INFO     | PID=3440650 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 09:32:43] 2025-11-27 17:32:41,434 | INFO     | .. there are 42 such processes running
[2025-11-27 09:32:43] 2025-11-27 17:32:41,442 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 09:32:43] 2025-11-27 17:32:41,442 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 09:32:43] 2025-11-27 17:32:41,443 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 09:32:43] 2025-11-27 17:32:41,443 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 09:32:43] 2025-11-27 17:32:41,443 | INFO     | [monitor] control thread has ended
[2025-11-27 09:32:43] 2025-11-27 17:32:41,878 [wrapper] ==== pilot stdout END ====
[2025-11-27 09:32:43] 2025-11-27 17:32:41,920 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 09:32:43] 2025-11-27 17:32:41,980 [wrapper] pilotpid: 3440650
[2025-11-27 09:32:43] 2025-11-27 17:32:42,021 [wrapper] Pilot exit status: 0
[2025-11-27 09:32:43] 2025-11-27 17:32:42,188 [wrapper] pandaids: 6894239599
[2025-11-27 09:32:43] 2025-11-27 17:32:42,758 [wrapper] cleanup supervisor_pilot 3440656 3440651
[2025-11-27 09:32:43] 2025-11-27 17:32:42,790 [wrapper] Test setup, not cleaning
[2025-11-27 09:32:43] 2025-11-27 17:32:42,802 [wrapper] apfmon messages muted
[2025-11-27 09:32:43] 2025-11-27 17:32:42,827 [wrapper] ==== wrapper stdout END ====
[2025-11-27 09:32:43] 2025-11-27 17:32:42,909 [wrapper] ==== wrapper stderr END ====
[2025-11-27 09:32:43]  *** Error codes and diagnostics ***
[2025-11-27 09:32:43]     "exeErrorCode": 65,
[2025-11-27 09:32:43]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2025-11-27 09:32:43]     "pilotErrorCode": 1305,
[2025-11-27 09:32:43]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2025-11-27 09:32:43]  *** Listing of results directory ***
[2025-11-27 09:32:43] total 405500
[2025-11-27 09:32:43] -rw-r--r--. 1 boinc boinc    576529 Nov 26 17:09 pilot3.tar.gz
[2025-11-27 09:32:43] -rwx------. 1 boinc boinc     36292 Nov 26 17:28 runpilot2-wrapper.sh
[2025-11-27 09:32:43] -rw-r--r--. 1 boinc boinc      5112 Nov 26 17:31 queuedata.json
[2025-11-27 09:32:43] -rw-r--r--. 1 boinc boinc       100 Nov 27 09:22 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 09:32:43] -rwxr-xr-x. 1 boinc boinc      7986 Nov 27 09:22 run_atlas
[2025-11-27 09:32:43] -rw-r--r--. 1 boinc boinc       105 Nov 27 09:22 job.xml
[2025-11-27 09:32:43] -rw-r--r--. 1 boinc boinc      6596 Nov 27 09:22 init_data.xml
[2025-11-27 09:32:43] -rw-r--r--. 2 boinc boinc 410975696 Nov 27 09:22 EVNT.47493127._001017.pool.root.1
[2025-11-27 09:32:43] -rw-r--r--. 2 boinc boinc     15847 Nov 27 09:22 start_atlas.sh
[2025-11-27 09:32:43] drwxrwx--x. 2 boinc boinc      4096 Nov 27 09:22 shared
[2025-11-27 09:32:43] -rw-r--r--. 2 boinc boinc    590112 Nov 27 09:22 input.tar.gz
[2025-11-27 09:32:43] -rw-r--r--. 1 boinc boinc         0 Nov 27 09:22 boinc_lockfile
[2025-11-27 09:32:43] -rw-r--r--. 1 boinc boinc      2787 Nov 27 09:22 pandaJob.out
[2025-11-27 09:32:43] -rw-------. 1 boinc boinc    991231 Nov 27 09:23 agis_schedconf.cvmfs.json
[2025-11-27 09:32:43] -rw-------. 1 boinc boinc   1516240 Nov 27 09:23 agis_ddmendpoints.agis.ALL.json
[2025-11-27 09:32:43] drwx------. 5 boinc boinc      4096 Nov 27 09:23 pilot3
[2025-11-27 09:32:43] -rw-r--r--. 1 boinc boinc       525 Nov 27 09:28 boinc_task_state.xml
[2025-11-27 09:32:43] -rw-------. 1 boinc boinc      1000 Nov 27 09:29 memory_monitor_summary.json
[2025-11-27 09:32:43] -rw-------. 1 boinc boinc     50913 Nov 27 09:29 log.47533962._000166.job.log.tgz.1
[2025-11-27 09:32:43] -rw-------. 1 boinc boinc     10340 Nov 27 09:32 heartbeat.json
[2025-11-27 09:32:43] -rw-------. 1 boinc boinc        95 Nov 27 09:32 pilot_heartbeat.json
[2025-11-27 09:32:43] -rw-------. 1 boinc boinc       823 Nov 27 09:32 pilotlog.txt
[2025-11-27 09:32:43] -rw-r--r--. 1 boinc boinc      8192 Nov 27 09:32 boinc_mmap_file
[2025-11-27 09:32:43] -rw-r--r--. 1 boinc boinc        23 Nov 27 09:32 wrapper_checkpoint.txt
[2025-11-27 09:32:43] -rw-------. 1 boinc boinc    124782 Nov 27 09:32 log.47533962._000166.job.log.1
[2025-11-27 09:32:43] -rw-------. 1 boinc boinc       186 Nov 27 09:32 output.list
[2025-11-27 09:32:43] -rw-r--r--. 1 boinc boinc       620 Nov 27 09:32 runtime_log
[2025-11-27 09:32:43] -rw-------. 1 boinc boinc    194560 Nov 27 09:32 result.tar.gz
[2025-11-27 09:32:43] -rw-r--r--. 1 boinc boinc      8636 Nov 27 09:32 runtime_log.err
[2025-11-27 09:32:43] -rw-------. 1 boinc boinc       646 Nov 27 09:32 NKnLDmczfi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm5SKKDmTMHOMm.diag
[2025-11-27 09:32:43] -rw-r--r--. 1 boinc boinc     22637 Nov 27 09:32 stderr.txt
[2025-11-27 09:32:43] No HITS result produced
[2025-11-27 09:32:43]  *** Contents of shared directory: ***
[2025-11-27 09:32:43] total 402136
[2025-11-27 09:32:43] -rw-r--r--. 2 boinc boinc 410975696 Nov 27 09:22 ATLAS.root_0
[2025-11-27 09:32:43] -rw-r--r--. 2 boinc boinc     15847 Nov 27 09:22 start_atlas.sh
[2025-11-27 09:32:43] -rw-r--r--. 2 boinc boinc    590112 Nov 27 09:22 input.tar.gz
[2025-11-27 09:32:43] -rw-------. 1 boinc boinc    194560 Nov 27 09:32 result.tar.gz
09:32:45 (3436520): run_atlas exited; CPU time 89.625091
09:32:45 (3436520): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN