Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
10:09:22 (25062): wrapper (7.7.26015): starting
10:09:22 (25062): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 10:09:22] Arguments: --nthreads 8
[2025-11-27 10:09:22] Threads: 8
[2025-11-27 10:09:22] Checking for CVMFS
[2025-11-27 10:09:22] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 10:09:22] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 10:09:22] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 10:09:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 10:09:22] 2.11.2.0 24877 119284 148292 153369 2 59 17529268 18432000 1885 130560 0 86920617 99.975 4933923 31992 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-27 10:09:22] CVMFS is ok
[2025-11-27 10:09:22] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 10:09:22] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 10:09:22] Further information can be found at the LHC@home message board.
[2025-11-27 10:09:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 10:09:22] Checking for apptainer binary...
[2025-11-27 10:09:22] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 10:09:22] Running /usr/bin/apptainer --version
[2025-11-27 10:09:23] apptainer version 1.3.2-1.el7
[2025-11-27 10:09:23] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 10:09:23] c-206-3.aglt2.org
[2025-11-27 10:09:23] apptainer works
[2025-11-27 10:09:23] Set ATHENA_PROC_NUMBER=8
[2025-11-27 10:09:23] Set ATHENA_CORE_NUMBER=8
[2025-11-27 10:09:23] Starting ATLAS job with PandaID=6898378280
[2025-11-27 10:09:23] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 05:34:37]  *** The last 200 lines of the pilot log: ***
[2025-11-28 05:34:37] 2025-11-28 10:33:45,242 | INFO     | time since job start (69850s) is within the limit (172800.0s)
[2025-11-28 05:34:37] 2025-11-28 10:33:46,823 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-28 05:34:37] 2025-11-28 10:33:46,830 | INFO     | found 12 cores (6 cores per socket, 2 sockets) HT, CPU MHz: 2488.9583333333335
[2025-11-28 05:34:37] 2025-11-28 10:33:46,834 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6898378280/memory_monitor_summary.json (trf name=prmon)
[2025-11-28 05:34:37] 2025-11-28 10:33:46,835 | INFO     | extracted standard info from prmon json
[2025-11-28 05:34:37] 2025-11-28 10:33:46,835 | INFO     | extracted standard memory fields from prmon json
[2025-11-28 05:34:37] 2025-11-28 10:33:46,836 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-28 05:34:37] 2025-11-28 10:33:46,866 | INFO     | fitting pss+swap vs Time
[2025-11-28 05:34:37] 2025-11-28 10:33:46,868 | INFO     | sum of square deviations: 465472718822.99896
[2025-11-28 05:34:37] 2025-11-28 10:33:46,914 | INFO     | sum of deviations: 2209066992474.268
[2025-11-28 05:34:37] 2025-11-28 10:33:46,914 | INFO     | mean x: 1764291093.5991266
[2025-11-28 05:34:37] 2025-11-28 10:33:46,914 | INFO     | mean y: 2858311.0681222705
[2025-11-28 05:34:37] 2025-11-28 10:33:46,915 | INFO     | intersect: -8370215045.070291
[2025-11-28 05:34:37] 2025-11-28 10:33:46,916 | INFO     | chi2: 6.400229134113492
[2025-11-28 05:34:37] 2025-11-28 10:33:46,918 | INFO     | sum of square deviations: 459401614216.19604
[2025-11-28 05:34:37] 2025-11-28 10:33:46,962 | INFO     | sum of deviations: 2560889607014.7964
[2025-11-28 05:34:37] 2025-11-28 10:33:46,963 | INFO     | mean x: 1764290941.1017544
[2025-11-28 05:34:37] 2025-11-28 10:33:46,963 | INFO     | mean y: 2867143.803508772
[2025-11-28 05:34:37] 2025-11-28 10:33:46,963 | INFO     | intersect: -9832001073.90279
[2025-11-28 05:34:37] 2025-11-28 10:33:46,965 | INFO     | chi2: 3.5918900316029476
[2025-11-28 05:34:37] 2025-11-28 10:33:46,965 | INFO     | current chi2=3.5918900316029476 (change=43.87872752151916 %)
[2025-11-28 05:34:37] 2025-11-28 10:33:46,967 | INFO     | sum of square deviations: 453383533859.37823
[2025-11-28 05:34:37] 2025-11-28 10:33:47,012 | INFO     | sum of deviations: 2737344378505.786
[2025-11-28 05:34:37] 2025-11-28 10:33:47,012 | INFO     | mean x: 1764290788.6044054
[2025-11-28 05:34:37] 2025-11-28 10:33:47,013 | INFO     | mean y: 2871614.32246696
[2025-11-28 05:34:37] 2025-11-28 10:33:47,013 | INFO     | intersect: -10649194708.25757
[2025-11-28 05:34:37] 2025-11-28 10:33:47,014 | INFO     | chi2: 2.796865065624855
[2025-11-28 05:34:37] 2025-11-28 10:33:47,014 | INFO     | current chi2=2.796865065624855 (change=22.13388937253455 %)
[2025-11-28 05:34:37] 2025-11-28 10:33:47,015 | INFO     | right removable region: 1134
[2025-11-28 05:34:37] 2025-11-28 10:33:47,016 | INFO     | sum of square deviations: 459401195756.1961
[2025-11-28 05:34:37] 2025-11-28 10:33:47,046 | INFO     | sum of deviations: 1901484357102.6396
[2025-11-28 05:34:37] 2025-11-28 10:33:47,046 | INFO     | monitor loop #5003: job 0:6898378280 is in state 'finished'
[2025-11-28 05:34:37] 2025-11-28 10:33:47,047 | INFO     | mean x: 1764291246.1017544
[2025-11-28 05:34:37] 2025-11-28 10:33:47,047 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 05:34:37] 2025-11-28 10:33:47,047 | INFO     | mean y: 2866028.88245614
[2025-11-28 05:34:37] 2025-11-28 10:33:47,047 | INFO     | intersect: -7299623030.410253
[2025-11-28 05:34:37] 2025-11-28 10:33:47,048 | INFO     | chi2: 4.273012559896091
[2025-11-28 05:34:37] 2025-11-28 10:33:47,048 | INFO     | current chi2=4.273012559896091 (change=33.23656902968125 %)
[2025-11-28 05:34:37] 2025-11-28 10:33:47,049 | INFO     | sum of square deviations: 453382905559.99646
[2025-11-28 05:34:37] 2025-11-28 10:33:47,072 | INFO     | sum of deviations: 1804706359647.202
[2025-11-28 05:34:37] 2025-11-28 10:33:47,073 | INFO     | mean x: 1764291398.601762
[2025-11-28 05:34:37] 2025-11-28 10:33:47,073 | INFO     | mean y: 2868480.898678414
[2025-11-28 05:34:37] 2025-11-28 10:33:47,073 | INFO     | intersect: -7019954541.938277
[2025-11-28 05:34:37] 2025-11-28 10:33:47,074 | INFO     | chi2: 4.166148430422099
[2025-11-28 05:34:37] 2025-11-28 10:33:47,074 | INFO     | current chi2=4.166148430422099 (change=2.5009083866720703 %)
[2025-11-28 05:34:37] 2025-11-28 10:33:47,074 | INFO     | left removable region: 20
[2025-11-28 05:34:37] 2025-11-28 10:33:47,075 | INFO     | sum of square deviations: 428680251033.8575
[2025-11-28 05:34:37] 2025-11-28 10:33:47,097 | INFO     | sum of deviations: 2216778955884.064
[2025-11-28 05:34:37] 2025-11-28 10:33:47,097 | INFO     | mean x: 1764291368.1086175
[2025-11-28 05:34:37] 2025-11-28 10:33:47,098 | INFO     | mean y: 2886383.462298025
[2025-11-28 05:34:37] 2025-11-28 10:33:47,098 | INFO     | intersect: -9120566277.206669
[2025-11-28 05:34:37] 2025-11-28 10:33:47,099 | INFO     | chi2: 0.3796154492683501
[2025-11-28 05:34:37] 2025-11-28 10:33:47,099 | INFO     | current memory leak: 5.17 B/s (using 1114 data points, chi2=0.38)
[2025-11-28 05:34:37] 2025-11-28 10:33:47,100 | INFO     | could have reported an average CPU frequency of 2622 MHz (42 samples)
[2025-11-28 05:34:37] 2025-11-28 10:33:47,100 | INFO     | ..............................
[2025-11-28 05:34:37] 2025-11-28 10:33:47,100 | INFO     | . Timing measurements:
[2025-11-28 05:34:37] 2025-11-28 10:33:47,100 | INFO     | . get job = 0 s
[2025-11-28 05:34:37] 2025-11-28 10:33:47,100 | INFO     | . initial setup = 2 s
[2025-11-28 05:34:37] 2025-11-28 10:33:47,100 | INFO     | . payload setup = 5 s
[2025-11-28 05:34:37] 2025-11-28 10:33:47,100 | INFO     | . stage-in = 0 s
[2025-11-28 05:34:37] 2025-11-28 10:33:47,100 | INFO     | . payload execution = 69818 s
[2025-11-28 05:34:37] 2025-11-28 10:33:47,100 | INFO     | . stage-out = 3 s
[2025-11-28 05:34:37] 2025-11-28 10:33:47,101 | INFO     | . log creation = 0 s
[2025-11-28 05:34:37] 2025-11-28 10:33:47,101 | INFO     | ..............................
[2025-11-28 05:34:37] 2025-11-28 10:33:47,182 | INFO     | 
[2025-11-28 05:34:37] 2025-11-28 10:33:47,182 | INFO     | job summary report
[2025-11-28 05:34:37] 2025-11-28 10:33:47,182 | INFO     | --------------------------------------------------
[2025-11-28 05:34:37] 2025-11-28 10:33:47,182 | INFO     | PanDA job id: 6898378280
[2025-11-28 05:34:37] 2025-11-28 10:33:47,183 | INFO     | task id: 47556161
[2025-11-28 05:34:37] 2025-11-28 10:33:47,183 | INFO     | errors: (none)
[2025-11-28 05:34:37] 2025-11-28 10:33:47,183 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-28 05:34:37] 2025-11-28 10:33:47,183 | INFO     | pilot state: finished 
[2025-11-28 05:34:37] 2025-11-28 10:33:47,183 | INFO     | transexitcode: 0
[2025-11-28 05:34:37] 2025-11-28 10:33:47,183 | INFO     | exeerrorcode: 0
[2025-11-28 05:34:37] 2025-11-28 10:33:47,183 | INFO     | exeerrordiag: 
[2025-11-28 05:34:37] 2025-11-28 10:33:47,183 | INFO     | exitcode: 0
[2025-11-28 05:34:37] 2025-11-28 10:33:47,183 | INFO     | exitmsg: OK
[2025-11-28 05:34:37] 2025-11-28 10:33:47,183 | INFO     | cpuconsumptiontime: 539297 s
[2025-11-28 05:34:37] 2025-11-28 10:33:47,184 | INFO     | nevents: 1000
[2025-11-28 05:34:37] 2025-11-28 10:33:47,184 | INFO     | neventsw: 0
[2025-11-28 05:34:37] 2025-11-28 10:33:47,184 | INFO     | pid: 2970
[2025-11-28 05:34:37] 2025-11-28 10:33:47,184 | INFO     | pgrp: 2970
[2025-11-28 05:34:37] 2025-11-28 10:33:47,184 | INFO     | corecount: 8
[2025-11-28 05:34:37] 2025-11-28 10:33:47,184 | INFO     | event service: False
[2025-11-28 05:34:37] 2025-11-28 10:33:47,184 | INFO     | sizes: {0: 2284089, 1: 2284344, 2: 2284344, 5: 2284634, 12: 2284690, 69827: 2341263, 69828: 2341390, 69832: 2350496, 69836: 2350686}
[2025-11-28 05:34:37] 2025-11-28 10:33:47,184 | INFO     | --------------------------------------------------
[2025-11-28 05:34:37] 2025-11-28 10:33:47,184 | INFO     | 
[2025-11-28 05:34:37] 2025-11-28 10:33:47,185 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-28 05:34:37] 2025-11-28 10:33:47,198 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-28 05:34:37] 2025-11-28 10:33:47,198 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-28 05:34:37] 2025-11-28 10:33:47,198 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-28 05:34:37] 2025-11-28 10:33:47,198 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-28 05:34:37] 2025-11-28 10:33:47,198 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-28 05:34:37] 2025-11-28 10:33:47,199 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-28 05:34:37] 2025-11-28 10:33:47,199 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-28 05:34:37] 2025-11-28 10:33:47,199 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-28 05:34:37] 2025-11-28 10:33:47,199 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-28 05:34:37] 2025-11-28 10:33:47,199 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-28 05:34:37] 2025-11-28 10:33:47,199 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-28 05:34:37] 2025-11-28 10:33:47,199 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-28 05:34:37] 2025-11-28 10:33:47,199 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-28 05:34:37] 2025-11-28 10:33:47,200 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-28 05:34:37] 2025-11-28 10:33:47,200 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-28 05:34:37] 2025-11-28 10:33:47,200 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-28 05:34:37] 2025-11-28 10:33:47,200 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-28 05:34:37] 2025-11-28 10:33:47,200 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-28 05:34:37] 2025-11-28 10:33:47,200 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-28 05:34:37] 2025-11-28 10:33:47,200 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-28 05:34:37] 2025-11-28 10:33:47,200 | INFO     | job 6898378280 has completed (purged errors)
[2025-11-28 05:34:37] 2025-11-28 10:33:47,201 | INFO     | overall cleanup function is called
[2025-11-28 05:34:37] 2025-11-28 10:33:48,213 | INFO     | --- collectZombieJob: --- 10, [2970]
[2025-11-28 05:34:37] 2025-11-28 10:33:48,214 | INFO     | zombie collector waiting for pid 2970
[2025-11-28 05:34:37] 2025-11-28 10:33:48,214 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-28 05:34:37] 2025-11-28 10:33:48,214 | INFO     | collected zombie processes
[2025-11-28 05:34:37] 2025-11-28 10:33:48,214 | INFO     | will attempt to kill all subprocesses of pid=2970
[2025-11-28 05:34:37] 2025-11-28 10:33:48,378 | INFO     | process IDs to be killed: [2970] (in reverse order)
[2025-11-28 05:34:37] 2025-11-28 10:33:48,423 | WARNING  | found no corresponding commands to process id(s)
[2025-11-28 05:34:37] 2025-11-28 10:33:48,424 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-28 05:34:37] 2025-11-28 10:33:48,429 | INFO     | did not find any defunct processes belonging to 2970
[2025-11-28 05:34:37] 2025-11-28 10:33:48,434 | INFO     | did not find any defunct processes belonging to 2970
[2025-11-28 05:34:37] 2025-11-28 10:33:48,435 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 05:34:37] 2025-11-28 10:33:48,436 | INFO     | ready for new job
[2025-11-28 05:34:37] 2025-11-28 10:33:48,436 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 05:34:37] 2025-11-28 10:33:48,441 | INFO     | ***************************************
[2025-11-28 05:34:37] 2025-11-28 10:33:48,441 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 05:34:37] 2025-11-28 10:33:48,441 | INFO     | ***************************************
[2025-11-28 05:34:37] 2025-11-28 10:33:48,441 | INFO     | 
[2025-11-28 05:34:37] 2025-11-28 10:33:48,443 | INFO     | architecture information:
[2025-11-28 05:34:37] 2025-11-28 10:33:48,443 | INFO     | executing command: cat /etc/os-release
[2025-11-28 05:34:37] 2025-11-28 10:33:48,458 | INFO     | cat /etc/os-release:
[2025-11-28 05:34:37] NAME="CentOS Linux"
[2025-11-28 05:34:37] VERSION="7 (Core)"
[2025-11-28 05:34:37] ID="centos"
[2025-11-28 05:34:37] ID_LIKE="rhel fedora"
[2025-11-28 05:34:37] VERSION_ID="7"
[2025-11-28 05:34:37] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 05:34:37] ANSI_COLOR="0;31"
[2025-11-28 05:34:37] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 05:34:37] HOME_URL="https://www.centos.org/"
[2025-11-28 05:34:37] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 05:34:37] 
[2025-11-28 05:34:37] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 05:34:37] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 05:34:37] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 05:34:37] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 05:34:37] 
[2025-11-28 05:34:37] 2025-11-28 10:33:48,459 | INFO     | ***************************************
[2025-11-28 05:34:37] 2025-11-28 10:33:48,962 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-28 05:34:37] 2025-11-28 10:33:48,977 | INFO     | sufficient remaining disk space (25686966272 B)
[2025-11-28 05:34:37] 2025-11-28 10:33:48,977 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 05:34:37] 2025-11-28 10:33:48,978 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 05:34:37] 2025-11-28 10:33:48,978 | INFO     | update_server=False
[2025-11-28 05:34:37] 2025-11-28 10:33:48,978 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 05:34:37] 2025-11-28 10:33:48,978 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 05:34:37] 2025-11-28 10:33:48,979 | INFO     | aborting loop
[2025-11-28 05:34:37] 2025-11-28 10:33:48,979 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 05:34:37] 2025-11-28 10:33:48,979 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 05:34:37] 2025-11-28 10:33:48,979 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 05:34:37] 2025-11-28 10:33:49,186 | INFO     | all data control threads have been joined
[2025-11-28 05:34:37] 2025-11-28 10:33:49,980 | INFO     | [job] retrieve thread has finished
[2025-11-28 05:34:37] 2025-11-28 10:33:49,980 | INFO     | [job] job monitor thread has finished
[2025-11-28 05:34:37] 2025-11-28 10:33:49,981 | INFO     | [job] queue monitor thread has finished
[2025-11-28 05:34:37] 2025-11-28 10:33:50,097 | INFO     | [payload] failed_post thread has finished
[2025-11-28 05:34:37] 2025-11-28 10:33:50,154 | INFO     | all job control threads have been joined
[2025-11-28 05:34:37] 2025-11-28 10:33:50,191 | INFO     | [data] control thread has finished
[2025-11-28 05:34:37] 2025-11-28 10:33:50,400 | INFO     | all payload control threads have been joined
[2025-11-28 05:34:37] 2025-11-28 10:33:50,503 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 05:34:37] 2025-11-28 10:33:50,639 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 05:34:37] 2025-11-28 10:33:50,675 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 05:34:37] 2025-11-28 10:33:50,676 | INFO     | [data] copytool_in thread has finished
[2025-11-28 05:34:37] 2025-11-28 10:33:50,734 | INFO     | [job] validate thread has finished
[2025-11-28 05:34:37] 2025-11-28 10:33:50,878 | INFO     | [payload] validate_post thread has finished
[2025-11-28 05:34:37] 2025-11-28 10:33:50,982 | INFO     | [data] copytool_out thread has finished
[2025-11-28 05:34:37] 2025-11-28 10:33:51,160 | INFO     | [job] control thread has finished
[2025-11-28 05:34:37] 2025-11-28 10:33:51,296 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 05:34:37] 2025-11-28 10:33:51,405 | INFO     | [payload] control thread has finished
[2025-11-28 05:34:37] 2025-11-28 10:33:52,988 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 05:34:37] 2025-11-28 10:34:18,480 | INFO     | PID=28903 has CPU usage=8.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-28 05:34:37] 2025-11-28 10:34:18,480 | INFO     | .. there are 3 such processes running
[2025-11-28 05:34:37] 2025-11-28 10:34:18,480 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 05:34:37] 2025-11-28 10:34:18,480 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 05:34:37] 2025-11-28 10:34:18,481 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 05:34:37] 2025-11-28 10:34:31,238 | INFO     | [monitor] cgroup control has ended
[2025-11-28 05:34:37] 2025-11-28 10:34:32,244 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140272803440448)>', '<ExcThread(monitor, started 140272289707776)>']
[2025-11-28 05:34:37] 2025-11-28 10:34:32,549 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 05:34:37] 2025-11-28 10:34:32,549 | INFO     | [monitor] control thread has ended
[2025-11-28 05:34:37] 2025-11-28 10:34:37,269 | INFO     | all workflow threads have been joined
[2025-11-28 05:34:37] 2025-11-28 10:34:37,269 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 05:34:37] 2025-11-28 10:34:37,270 | INFO     | traces error code: 0
[2025-11-28 05:34:37] 2025-11-28 10:34:37,270 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 05:34:37] 2025-11-28 10:34:37,384 [wrapper] ==== pilot stdout END ====
[2025-11-28 05:34:37] 2025-11-28 10:34:37,386 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 05:34:37] 2025-11-28 10:34:37,389 [wrapper] pilotpid: 28903
[2025-11-28 05:34:37] 2025-11-28 10:34:37,392 [wrapper] Pilot exit status: 0
[2025-11-28 05:34:37] 2025-11-28 10:34:37,400 [wrapper] pandaids: 6898378280
[2025-11-28 05:34:37] 2025-11-28 10:34:37,440 [wrapper] cleanup supervisor_pilot 25155 28904
[2025-11-28 05:34:37] 2025-11-28 10:34:37,443 [wrapper] Test setup, not cleaning
[2025-11-28 05:34:37] 2025-11-28 10:34:37,446 [wrapper] apfmon messages muted
[2025-11-28 05:34:37] 2025-11-28 10:34:37,448 [wrapper] ==== wrapper stdout END ====
[2025-11-28 05:34:37] 2025-11-28 10:34:37,450 [wrapper] ==== wrapper stderr END ====
[2025-11-28 05:34:37]  *** Error codes and diagnostics ***
[2025-11-28 05:34:37]     "exeErrorCode": 0,
[2025-11-28 05:34:37]     "exeErrorDiag": "",
[2025-11-28 05:34:37]     "pilotErrorCode": 0,
[2025-11-28 05:34:37]     "pilotErrorDiag": "",
[2025-11-28 05:34:37]  *** Listing of results directory ***
[2025-11-28 05:34:37] total 1331052
[2025-11-28 05:34:37] -rw-r--r-- 1 boincer umatlas    576529 Nov 26 11:12 pilot3.tar.gz
[2025-11-28 05:34:37] -rw-r--r-- 1 boincer umatlas      5112 Nov 26 11:35 queuedata.json
[2025-11-28 05:34:37] -rwx------ 1 boincer umatlas     36292 Nov 26 11:35 runpilot2-wrapper.sh
[2025-11-28 05:34:37] -rw-r--r-- 1 boincer umatlas       100 Nov 27 10:09 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 05:34:37] -rwxr-xr-x 1 boincer umatlas      7986 Nov 27 10:09 run_atlas
[2025-11-28 05:34:37] -rw-r--r-- 1 boincer umatlas       105 Nov 27 10:09 job.xml
[2025-11-28 05:34:37] -rw-r--r-- 2 boincer umatlas 409225891 Nov 27 10:09 EVNT.47483658._002599.pool.root.1
[2025-11-28 05:34:37] -rw-r--r-- 2 boincer umatlas     15847 Nov 27 10:09 start_atlas.sh
[2025-11-28 05:34:37] drwxrwx--x 2 boincer umatlas      4096 Nov 27 10:09 shared
[2025-11-28 05:34:37] -rw-r--r-- 2 boincer umatlas    590105 Nov 27 10:09 input.tar.gz
[2025-11-28 05:34:37] -rw-r--r-- 1 boincer umatlas         0 Nov 27 10:09 boinc_lockfile
[2025-11-28 05:34:37] -rw-r--r-- 1 boincer umatlas      2787 Nov 27 10:09 pandaJob.out
[2025-11-28 05:34:37] -rw------- 1 boincer umatlas        57 Nov 27 10:09 setup.sh.local
[2025-11-28 05:34:37] -rw------- 1 boincer umatlas    991580 Nov 27 10:09 agis_schedconf.cvmfs.json
[2025-11-28 05:34:37] drwx------ 5 boincer umatlas      4096 Nov 27 10:09 pilot3
[2025-11-28 05:34:37] -rw-r--r-- 1 boincer umatlas       533 Nov 28 05:18 boinc_task_state.xml
[2025-11-28 05:34:37] -rw-r--r-- 1 boincer umatlas      5953 Nov 28 05:30 init_data.xml
[2025-11-28 05:34:37] -rw------- 1 boincer umatlas 925820340 Nov 28 05:33 HITS.47556161._005819.pool.root.1
[2025-11-28 05:34:37] -rw------- 1 boincer umatlas        95 Nov 28 05:33 pilot_heartbeat.json
[2025-11-28 05:34:37] -rw------- 1 boincer umatlas      1068 Nov 28 05:33 memory_monitor_summary.json
[2025-11-28 05:34:37] -rw------- 1 boincer umatlas   1516240 Nov 28 05:33 agis_ddmendpoints.agis.ALL.json
[2025-11-28 05:34:37] -rw------- 1 boincer umatlas   2325351 Nov 28 05:33 log.47556161._005819.job.log.tgz.1
[2025-11-28 05:34:37] -rw------- 1 boincer umatlas      8659 Nov 28 05:33 heartbeat.json
[2025-11-28 05:34:37] -rw-r--r-- 1 boincer umatlas      8192 Nov 28 05:34 boinc_mmap_file
[2025-11-28 05:34:37] -rw-r--r-- 1 boincer umatlas        29 Nov 28 05:34 wrapper_checkpoint.txt
[2025-11-28 05:34:37] -rw------- 1 boincer umatlas      4821 Nov 28 05:34 pilotlog.txt
[2025-11-28 05:34:37] -rw------- 1 boincer umatlas   9691187 Nov 28 05:34 log.47556161._005819.job.log.1
[2025-11-28 05:34:37] -rw------- 1 boincer umatlas       353 Nov 28 05:34 output.list
[2025-11-28 05:34:37] -rw-r--r-- 1 boincer umatlas       620 Nov 28 05:34 runtime_log
[2025-11-28 05:34:37] -rw------- 1 boincer umatlas  12032000 Nov 28 05:34 result.tar.gz
[2025-11-28 05:34:37] -rw-r--r-- 1 boincer umatlas      9338 Nov 28 05:34 runtime_log.err
[2025-11-28 05:34:37] -rw------- 1 boincer umatlas       667 Nov 28 05:34 CiVKDmnfXi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmT2JKDmJZsPAn.diag
[2025-11-28 05:34:37] -rw-r--r-- 1 boincer umatlas     21305 Nov 28 05:34 stderr.txt
[2025-11-28 05:34:37] HITS file was successfully produced:
[2025-11-28 05:34:37] -rw------- 1 boincer umatlas 925820340 Nov 28 05:33 shared/HITS.pool.root.1
[2025-11-28 05:34:37]  *** Contents of shared directory: ***
[2025-11-28 05:34:37] total 1316112
[2025-11-28 05:34:37] -rw-r--r-- 2 boincer umatlas 409225891 Nov 27 10:09 ATLAS.root_0
[2025-11-28 05:34:37] -rw-r--r-- 2 boincer umatlas     15847 Nov 27 10:09 start_atlas.sh
[2025-11-28 05:34:37] -rw-r--r-- 2 boincer umatlas    590105 Nov 27 10:09 input.tar.gz
[2025-11-28 05:34:37] -rw------- 1 boincer umatlas 925820340 Nov 28 05:33 HITS.pool.root.1
[2025-11-28 05:34:37] -rw------- 1 boincer umatlas  12032000 Nov 28 05:34 result.tar.gz
05:34:39 (25062): run_atlas exited; CPU time 538320.474027
05:34:39 (25062): called boinc_finish(0)

</stderr_txt>
]]>

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