Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
03:16:20 (13583): wrapper (7.7.26015): starting
03:16:20 (13583): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 03:16:20] Arguments: --nthreads 8
[2025-11-27 03:16:20] Threads: 8
[2025-11-27 03:16:20] Checking for CVMFS
[2025-11-27 03:16:20] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 03:16:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 03:16:20] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 03:16:21] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 03:16:21] 2.11.2.0 2840 68823 82808 153354 1 81 10566294 20275200 1 130560 0 18123942 99.824 4571169 26881 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-27 03:16:21] CVMFS is ok
[2025-11-27 03:16:21] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 03:16:21] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 03:16:21] Further information can be found at the LHC@home message board.
[2025-11-27 03:16:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 03:16:21] Checking for apptainer binary...
[2025-11-27 03:16:21] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 03:16:21] Running /usr/bin/apptainer --version
[2025-11-27 03:16:21] apptainer version 1.3.2-1.el7
[2025-11-27 03:16:21] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 03:16:22] c-204-39.aglt2.org
[2025-11-27 03:16:22] apptainer works
[2025-11-27 03:16:22] Set ATHENA_PROC_NUMBER=8
[2025-11-27 03:16:22] Set ATHENA_CORE_NUMBER=8
[2025-11-27 03:16:22] Starting ATLAS job with PandaID=6892540350
[2025-11-27 03:16:22] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
11:49:22 (15107): wrapper (7.7.26015): starting
11:49:22 (15107): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 11:49:22] Arguments: --nthreads 8
[2025-11-27 11:49:22] Threads: 8
[2025-11-27 11:49:22] This job has been restarted, cleaning up previous attempt
[2025-11-27 11:49:22] Checking for CVMFS
[2025-11-27 11:49:22] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 11:49:22] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 11:49:22] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 11:49:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 11:49:22] 2.11.2.0 2840 69336 78884 153373 1 56 11264656 20275200 1 130560 0 18303939 99.826 4597460 26927 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-27 11:49:22] CVMFS is ok
[2025-11-27 11:49:22] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 11:49:22] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 11:49:22] Further information can be found at the LHC@home message board.
[2025-11-27 11:49:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 11:49:22] Checking for apptainer binary...
[2025-11-27 11:49:22] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 11:49:22] Running /usr/bin/apptainer --version
[2025-11-27 11:49:23] apptainer version 1.3.2-1.el7
[2025-11-27 11:49:23] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 11:49:24] c-204-39.aglt2.org
[2025-11-27 11:49:24] apptainer works
[2025-11-27 11:49:24] Set ATHENA_PROC_NUMBER=8
[2025-11-27 11:49:24] Set ATHENA_CORE_NUMBER=8
[2025-11-27 11:49:25] Starting ATLAS job with PandaID=6892540350
[2025-11-27 11:49:25] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 00:24:14]  *** The last 200 lines of the pilot log: ***
[2025-11-28 00:24:14] 2025-11-28 05:23:38,560 | INFO     | time since job start (45236s) is within the limit (172800.0s)
[2025-11-28 00:24:14] 2025-11-28 05:23:39,519 | INFO     | monitor loop #3331: job 0:6892540350 is in state 'finished'
[2025-11-28 00:24:14] 2025-11-28 05:23:39,519 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 00:24:14] 2025-11-28 05:23:40,211 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-28 00:24:14] 2025-11-28 05:23:40,215 | INFO     | found 8 cores (4 cores per socket, 2 sockets) , CPU MHz: 1695.875
[2025-11-28 00:24:14] 2025-11-28 05:23:40,217 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6892540350/memory_monitor_summary.json (trf name=prmon)
[2025-11-28 00:24:14] 2025-11-28 05:23:40,218 | INFO     | extracted standard info from prmon json
[2025-11-28 00:24:14] 2025-11-28 05:23:40,218 | INFO     | extracted standard memory fields from prmon json
[2025-11-28 00:24:14] 2025-11-28 05:23:40,218 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-28 00:24:14] 2025-11-28 05:23:40,231 | INFO     | fitting pss+swap vs Time
[2025-11-28 00:24:14] 2025-11-28 05:23:40,232 | INFO     | sum of square deviations: 126162375347.64365
[2025-11-28 00:24:14] 2025-11-28 05:23:40,244 | INFO     | sum of deviations: 800890249590.2422
[2025-11-28 00:24:14] 2025-11-28 05:23:40,244 | INFO     | mean x: 1764284785.5465586
[2025-11-28 00:24:14] 2025-11-28 05:23:40,245 | INFO     | mean y: 2859937.3697705804
[2025-11-28 00:24:14] 2025-11-28 05:23:40,245 | INFO     | intersect: -11196980572.537378
[2025-11-28 00:24:14] 2025-11-28 05:23:40,246 | INFO     | chi2: 5.9545573651909525
[2025-11-28 00:24:14] 2025-11-28 05:23:40,247 | INFO     | sum of square deviations: 123625781541.14005
[2025-11-28 00:24:14] 2025-11-28 05:23:40,258 | INFO     | sum of deviations: 1026273175260.5935
[2025-11-28 00:24:14] 2025-11-28 05:23:40,259 | INFO     | mean x: 1764284633.0502717
[2025-11-28 00:24:14] 2025-11-28 05:23:40,259 | INFO     | mean y: 2873482.28125
[2025-11-28 00:24:14] 2025-11-28 05:23:40,259 | INFO     | intersect: -14643246201.268991
[2025-11-28 00:24:14] 2025-11-28 05:23:40,260 | INFO     | chi2: 3.2153343629234663
[2025-11-28 00:24:14] 2025-11-28 05:23:40,260 | INFO     | current chi2=3.2153343629234663 (change=46.00212634242787 %)
[2025-11-28 00:24:14] 2025-11-28 05:23:40,261 | INFO     | sum of square deviations: 121123420934.61572
[2025-11-28 00:24:14] 2025-11-28 05:23:40,273 | INFO     | sum of deviations: 1136966207025.2668
[2025-11-28 00:24:14] 2025-11-28 05:23:40,273 | INFO     | mean x: 1764284480.5540357
[2025-11-28 00:24:14] 2025-11-28 05:23:40,273 | INFO     | mean y: 2880224.7400820795
[2025-11-28 00:24:14] 2025-11-28 05:23:40,273 | INFO     | intersect: -16558176410.639278
[2025-11-28 00:24:14] 2025-11-28 05:23:40,274 | INFO     | chi2: 2.462978092994892
[2025-11-28 00:24:14] 2025-11-28 05:23:40,274 | INFO     | current chi2=2.462978092994892 (change=23.39900567120218 %)
[2025-11-28 00:24:14] 2025-11-28 05:23:40,274 | INFO     | right removable region: 730
[2025-11-28 00:24:14] 2025-11-28 05:23:40,275 | INFO     | sum of square deviations: 123625534491.14001
[2025-11-28 00:24:14] 2025-11-28 05:23:40,288 | INFO     | sum of deviations: 602218227144.825
[2025-11-28 00:24:14] 2025-11-28 05:23:40,288 | INFO     | mean x: 1764284938.0502717
[2025-11-28 00:24:14] 2025-11-28 05:23:40,288 | INFO     | mean y: 2871861.626358696
[2025-11-28 00:24:14] 2025-11-28 05:23:40,288 | INFO     | intersect: -8591505925.65106
[2025-11-28 00:24:14] 2025-11-28 05:23:40,289 | INFO     | chi2: 3.8120851093426698
[2025-11-28 00:24:14] 2025-11-28 05:23:40,289 | INFO     | current chi2=3.8120851093426698 (change=35.98037812806557 %)
[2025-11-28 00:24:14] 2025-11-28 05:23:40,290 | INFO     | sum of square deviations: 121122971608.72198
[2025-11-28 00:24:14] 2025-11-28 05:23:40,302 | INFO     | sum of deviations: 555676341227.6129
[2025-11-28 00:24:14] 2025-11-28 05:23:40,302 | INFO     | mean x: 1764285090.5526676
[2025-11-28 00:24:14] 2025-11-28 05:23:40,302 | INFO     | mean y: 2874696.659370725
[2025-11-28 00:24:14] 2025-11-28 05:23:40,302 | INFO     | intersect: -8091143068.754653
[2025-11-28 00:24:14] 2025-11-28 05:23:40,303 | INFO     | chi2: 3.7586612751828223
[2025-11-28 00:24:14] 2025-11-28 05:23:40,303 | INFO     | current chi2=3.7586612751828223 (change=1.4014334052751372 %)
[2025-11-28 00:24:14] 2025-11-28 05:23:40,303 | INFO     | left removable region: 20
[2025-11-28 00:24:14] 2025-11-28 05:23:40,304 | INFO     | sum of square deviations: 110981404982.39586
[2025-11-28 00:24:14] 2025-11-28 05:23:40,315 | INFO     | sum of deviations: 848656174041.596
[2025-11-28 00:24:14] 2025-11-28 05:23:40,315 | INFO     | mean x: 1764285060.0605633
[2025-11-28 00:24:14] 2025-11-28 05:23:40,315 | INFO     | mean y: 2899858.614084507
[2025-11-28 00:24:14] 2025-11-28 05:23:40,315 | INFO     | intersect: -13488291834.510056
[2025-11-28 00:24:14] 2025-11-28 05:23:40,316 | INFO     | chi2: 0.17426329277306518
[2025-11-28 00:24:14] 2025-11-28 05:23:40,316 | INFO     | current memory leak: 7.65 B/s (using 710 data points, chi2=0.17)
[2025-11-28 00:24:14] 2025-11-28 05:23:40,317 | INFO     | could have reported an average CPU frequency of 2173 MHz (28 samples)
[2025-11-28 00:24:14] 2025-11-28 05:23:40,317 | INFO     | ..............................
[2025-11-28 00:24:14] 2025-11-28 05:23:40,317 | INFO     | . Timing measurements:
[2025-11-28 00:24:14] 2025-11-28 05:23:40,317 | INFO     | . get job = 0 s
[2025-11-28 00:24:14] 2025-11-28 05:23:40,318 | INFO     | . initial setup = 2 s
[2025-11-28 00:24:14] 2025-11-28 05:23:40,318 | INFO     | . payload setup = 8 s
[2025-11-28 00:24:14] 2025-11-28 05:23:40,318 | INFO     | . stage-in = 0 s
[2025-11-28 00:24:14] 2025-11-28 05:23:40,318 | INFO     | . payload execution = 45195 s
[2025-11-28 00:24:14] 2025-11-28 05:23:40,318 | INFO     | . stage-out = 3 s
[2025-11-28 00:24:14] 2025-11-28 05:23:40,318 | INFO     | . log creation = 0 s
[2025-11-28 00:24:14] 2025-11-28 05:23:40,318 | INFO     | ..............................
[2025-11-28 00:24:14] 2025-11-28 05:23:40,565 | INFO     | time since job start (45238s) is within the limit (172800.0s)
[2025-11-28 00:24:14] 2025-11-28 05:23:40,840 | INFO     | 
[2025-11-28 00:24:14] 2025-11-28 05:23:40,840 | INFO     | job summary report
[2025-11-28 00:24:14] 2025-11-28 05:23:40,840 | INFO     | --------------------------------------------------
[2025-11-28 00:24:14] 2025-11-28 05:23:40,841 | INFO     | PanDA job id: 6892540350
[2025-11-28 00:24:14] 2025-11-28 05:23:40,841 | INFO     | task id: 47493029
[2025-11-28 00:24:14] 2025-11-28 05:23:40,841 | INFO     | errors: (none)
[2025-11-28 00:24:14] 2025-11-28 05:23:40,841 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-28 00:24:14] 2025-11-28 05:23:40,841 | INFO     | pilot state: finished 
[2025-11-28 00:24:14] 2025-11-28 05:23:40,842 | INFO     | transexitcode: 0
[2025-11-28 00:24:14] 2025-11-28 05:23:40,842 | INFO     | exeerrorcode: 0
[2025-11-28 00:24:14] 2025-11-28 05:23:40,842 | INFO     | exeerrordiag: 
[2025-11-28 00:24:14] 2025-11-28 05:23:40,842 | INFO     | exitcode: 0
[2025-11-28 00:24:14] 2025-11-28 05:23:40,842 | INFO     | exitmsg: OK
[2025-11-28 00:24:14] 2025-11-28 05:23:40,842 | INFO     | cpuconsumptiontime: 346852 s
[2025-11-28 00:24:14] 2025-11-28 05:23:40,843 | INFO     | nevents: 1000
[2025-11-28 00:24:14] 2025-11-28 05:23:40,843 | INFO     | neventsw: 0
[2025-11-28 00:24:14] 2025-11-28 05:23:40,843 | INFO     | pid: 26215
[2025-11-28 00:24:14] 2025-11-28 05:23:40,843 | INFO     | pgrp: 26215
[2025-11-28 00:24:14] 2025-11-28 05:23:40,843 | INFO     | corecount: 8
[2025-11-28 00:24:14] 2025-11-28 05:23:40,843 | INFO     | event service: False
[2025-11-28 00:24:14] 2025-11-28 05:23:40,844 | INFO     | sizes: {0: 2284133, 1: 2284332, 7: 2284594, 11: 2284622, 45207: 2330678, 45208: 2330677, 45212: 2339911, 45220: 2340101}
[2025-11-28 00:24:14] 2025-11-28 05:23:40,844 | INFO     | --------------------------------------------------
[2025-11-28 00:24:14] 2025-11-28 05:23:40,844 | INFO     | 
[2025-11-28 00:24:14] 2025-11-28 05:23:40,844 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-28 00:24:14] 2025-11-28 05:23:40,872 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-28 00:24:14] 2025-11-28 05:23:40,873 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-28 00:24:14] 2025-11-28 05:23:40,873 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-28 00:24:14] 2025-11-28 05:23:40,873 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-28 00:24:14] 2025-11-28 05:23:40,874 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-28 00:24:14] 2025-11-28 05:23:40,874 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-28 00:24:14] 2025-11-28 05:23:40,874 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-28 00:24:14] 2025-11-28 05:23:40,874 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-28 00:24:14] 2025-11-28 05:23:40,875 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-28 00:24:14] 2025-11-28 05:23:40,875 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-28 00:24:14] 2025-11-28 05:23:40,875 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-28 00:24:14] 2025-11-28 05:23:40,875 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-28 00:24:14] 2025-11-28 05:23:40,875 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-28 00:24:14] 2025-11-28 05:23:40,875 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-28 00:24:14] 2025-11-28 05:23:40,876 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-28 00:24:14] 2025-11-28 05:23:40,876 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-28 00:24:14] 2025-11-28 05:23:40,876 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-28 00:24:14] 2025-11-28 05:23:40,876 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-28 00:24:14] 2025-11-28 05:23:40,876 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-28 00:24:14] 2025-11-28 05:23:40,876 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-28 00:24:14] 2025-11-28 05:23:40,877 | INFO     | job 6892540350 has completed (purged errors)
[2025-11-28 00:24:14] 2025-11-28 05:23:40,877 | INFO     | overall cleanup function is called
[2025-11-28 00:24:14] 2025-11-28 05:23:41,891 | INFO     | --- collectZombieJob: --- 10, [26215]
[2025-11-28 00:24:14] 2025-11-28 05:23:41,891 | INFO     | zombie collector waiting for pid 26215
[2025-11-28 00:24:14] 2025-11-28 05:23:41,892 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-28 00:24:14] 2025-11-28 05:23:41,892 | INFO     | collected zombie processes
[2025-11-28 00:24:14] 2025-11-28 05:23:41,892 | INFO     | will attempt to kill all subprocesses of pid=26215
[2025-11-28 00:24:14] 2025-11-28 05:23:41,981 | INFO     | process IDs to be killed: [26215] (in reverse order)
[2025-11-28 00:24:14] 2025-11-28 05:23:42,038 | WARNING  | found no corresponding commands to process id(s)
[2025-11-28 00:24:14] 2025-11-28 05:23:42,039 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-28 00:24:14] 2025-11-28 05:23:42,043 | INFO     | did not find any defunct processes belonging to 26215
[2025-11-28 00:24:14] 2025-11-28 05:23:42,047 | INFO     | did not find any defunct processes belonging to 26215
[2025-11-28 00:24:14] 2025-11-28 05:23:42,049 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 00:24:14] 2025-11-28 05:23:42,049 | INFO     | ready for new job
[2025-11-28 00:24:14] 2025-11-28 05:23:42,049 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 00:24:14] 2025-11-28 05:23:42,053 | INFO     | ***************************************
[2025-11-28 00:24:14] 2025-11-28 05:23:42,053 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 00:24:14] 2025-11-28 05:23:42,053 | INFO     | ***************************************
[2025-11-28 00:24:14] 2025-11-28 05:23:42,053 | INFO     | 
[2025-11-28 00:24:14] 2025-11-28 05:23:42,053 | INFO     | architecture information:
[2025-11-28 00:24:14] 2025-11-28 05:23:42,054 | INFO     | executing command: cat /etc/os-release
[2025-11-28 00:24:14] 2025-11-28 05:23:42,073 | INFO     | cat /etc/os-release:
[2025-11-28 00:24:14] NAME="CentOS Linux"
[2025-11-28 00:24:14] VERSION="7 (Core)"
[2025-11-28 00:24:14] ID="centos"
[2025-11-28 00:24:14] ID_LIKE="rhel fedora"
[2025-11-28 00:24:14] VERSION_ID="7"
[2025-11-28 00:24:14] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 00:24:14] ANSI_COLOR="0;31"
[2025-11-28 00:24:14] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 00:24:14] HOME_URL="https://www.centos.org/"
[2025-11-28 00:24:14] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 00:24:14] 
[2025-11-28 00:24:14] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 00:24:14] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 00:24:14] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 00:24:14] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 00:24:14] 
[2025-11-28 00:24:14] 2025-11-28 05:23:42,073 | INFO     | ***************************************
[2025-11-28 00:24:14] 2025-11-28 05:23:42,577 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-28 00:24:14] 2025-11-28 05:23:42,596 | INFO     | sufficient remaining disk space (17450401792 B)
[2025-11-28 00:24:14] 2025-11-28 05:23:42,597 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 00:24:14] 2025-11-28 05:23:42,597 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 00:24:14] 2025-11-28 05:23:42,597 | INFO     | update_server=False
[2025-11-28 00:24:14] 2025-11-28 05:23:42,597 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 00:24:14] 2025-11-28 05:23:42,598 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 00:24:14] 2025-11-28 05:23:42,598 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 00:24:14] 2025-11-28 05:23:43,027 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 00:24:14] 2025-11-28 05:23:43,028 | INFO     | aborting loop
[2025-11-28 00:24:14] 2025-11-28 05:23:43,196 | INFO     | all payload control threads have been joined
[2025-11-28 00:24:14] 2025-11-28 05:23:43,603 | INFO     | [job] retrieve thread has finished
[2025-11-28 00:24:14] 2025-11-28 05:23:43,632 | INFO     | all data control threads have been joined
[2025-11-28 00:24:14] 2025-11-28 05:23:43,659 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 00:24:14] 2025-11-28 05:23:43,704 | INFO     | all job control threads have been joined
[2025-11-28 00:24:14] 2025-11-28 05:23:43,809 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 00:24:14] 2025-11-28 05:23:44,030 | INFO     | [job] job monitor thread has finished
[2025-11-28 00:24:14] 2025-11-28 05:23:44,201 | INFO     | [payload] control thread has finished
[2025-11-28 00:24:14] 2025-11-28 05:23:44,397 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 00:24:14] 2025-11-28 05:23:44,463 | INFO     | [payload] validate_post thread has finished
[2025-11-28 00:24:14] 2025-11-28 05:23:44,477 | INFO     | [job] validate thread has finished
[2025-11-28 00:24:14] 2025-11-28 05:23:44,595 | INFO     | [payload] failed_post thread has finished
[2025-11-28 00:24:14] 2025-11-28 05:23:44,604 | INFO     | [data] copytool_out thread has finished
[2025-11-28 00:24:14] 2025-11-28 05:23:44,638 | INFO     | [data] control thread has finished
[2025-11-28 00:24:14] 2025-11-28 05:23:44,710 | INFO     | [job] control thread has finished
[2025-11-28 00:24:14] 2025-11-28 05:23:44,852 | INFO     | [data] copytool_in thread has finished
[2025-11-28 00:24:14] 2025-11-28 05:23:44,882 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 00:24:14] 2025-11-28 05:23:45,426 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 00:24:14] 2025-11-28 05:23:46,431 | INFO     | [job] queue monitor thread has finished
[2025-11-28 00:24:14] 2025-11-28 05:23:46,603 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 00:24:14] 2025-11-28 05:23:56,952 | INFO     | [monitor] cgroup control has ended
[2025-11-28 00:24:14] 2025-11-28 05:23:58,270 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140378000168768)>', '<ExcThread(monitor, started 140376954357504)>']
[2025-11-28 00:24:14] 2025-11-28 05:24:03,273 | INFO     | all workflow threads have been joined
[2025-11-28 00:24:14] 2025-11-28 05:24:03,273 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 00:24:14] 2025-11-28 05:24:03,274 | INFO     | traces error code: 0
[2025-11-28 00:24:14] 2025-11-28 05:24:03,274 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 00:24:14] 2025-11-28 05:24:13,780 | INFO     | PID=18811 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-28 00:24:14] 2025-11-28 05:24:13,781 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 00:24:14] 2025-11-28 05:24:13,781 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 00:24:14] 2025-11-28 05:24:13,781 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 00:24:14] 2025-11-28 05:24:13,781 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 00:24:14] 2025-11-28 05:24:13,781 | INFO     | [monitor] control thread has ended
[2025-11-28 00:24:14] 2025-11-28 05:24:13,884 [wrapper] ==== pilot stdout END ====
[2025-11-28 00:24:14] 2025-11-28 05:24:13,890 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 00:24:14] 2025-11-28 05:24:13,894 [wrapper] pilotpid: 18811
[2025-11-28 00:24:14] 2025-11-28 05:24:13,899 [wrapper] Pilot exit status: 0
[2025-11-28 00:24:14] 2025-11-28 05:24:13,917 [wrapper] pandaids: 6892540350 6892540350
[2025-11-28 00:24:14] 2025-11-28 05:24:13,965 [wrapper] cleanup supervisor_pilot 25884 18812
[2025-11-28 00:24:14] 2025-11-28 05:24:13,970 [wrapper] Test setup, not cleaning
[2025-11-28 00:24:14] 2025-11-28 05:24:13,975 [wrapper] apfmon messages muted
[2025-11-28 00:24:14] 2025-11-28 05:24:13,980 [wrapper] ==== wrapper stdout END ====
[2025-11-28 00:24:14] 2025-11-28 05:24:13,985 [wrapper] ==== wrapper stderr END ====
[2025-11-28 00:24:14]  *** Error codes and diagnostics ***
[2025-11-28 00:24:14]     "exeErrorCode": 0,
[2025-11-28 00:24:14]     "exeErrorDiag": "",
[2025-11-28 00:24:14]     "pilotErrorCode": 0,
[2025-11-28 00:24:14]     "pilotErrorDiag": "",
[2025-11-28 00:24:14]  *** Listing of results directory ***
[2025-11-28 00:24:14] total 1703108
[2025-11-28 00:24:14] drwx------ 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-28 00:24:14] -rw-r--r-- 1 boincer umatlas    576529 Nov 19 02:27 pilot3.tar.gz
[2025-11-28 00:24:14] -rwx------ 1 boincer umatlas     36292 Nov 19 02:33 runpilot2-wrapper.sh
[2025-11-28 00:24:14] -rw-r--r-- 1 boincer umatlas      5112 Nov 19 02:33 queuedata.json
[2025-11-28 00:24:14] -rw-r--r-- 1 boincer umatlas       100 Nov 27 03:16 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 00:24:14] -rwxr-xr-x 1 boincer umatlas      7986 Nov 27 03:16 run_atlas
[2025-11-28 00:24:14] -rw-r--r-- 1 boincer umatlas       105 Nov 27 03:16 job.xml
[2025-11-28 00:24:14] -rw-r--r-- 3 boincer umatlas 408408596 Nov 27 03:16 EVNT.47493027._000232.pool.root.1
[2025-11-28 00:24:14] -rw-r--r-- 3 boincer umatlas 408408596 Nov 27 03:16 ATLAS.root_0
[2025-11-28 00:24:14] -rw-r--r-- 2 boincer umatlas    590083 Nov 27 03:16 input.tar.gz
[2025-11-28 00:24:14] -rw-r--r-- 2 boincer umatlas     15120 Nov 27 03:16 start_atlas.sh
[2025-11-28 00:24:14] drwxrwx--x 2 boincer umatlas      4096 Nov 27 03:16 shared
[2025-11-28 00:24:14] -rw-r--r-- 1 boincer umatlas         0 Nov 27 03:16 boinc_lockfile
[2025-11-28 00:24:14] -rw-r--r-- 1 boincer umatlas      2773 Nov 27 11:49 pandaJob.out
[2025-11-28 00:24:14] -rw------- 1 boincer umatlas    991572 Nov 27 11:49 agis_schedconf.cvmfs.json
[2025-11-28 00:24:14] -rw-r--r-- 1 boincer umatlas       532 Nov 28 00:09 boinc_task_state.xml
[2025-11-28 00:24:14] -rw------- 1 boincer umatlas 906796933 Nov 28 00:22 HITS.47493029._002272.pool.root.1
[2025-11-28 00:24:14] -rw-r--r-- 1 boincer umatlas      5913 Nov 28 00:23 init_data.xml
[2025-11-28 00:24:14] -rw------- 1 boincer umatlas      1063 Nov 28 00:23 memory_monitor_summary.json
[2025-11-28 00:24:14] -rw------- 1 boincer umatlas   1516240 Nov 28 00:23 agis_ddmendpoints.agis.ALL.json
[2025-11-28 00:24:14] -rw------- 1 boincer umatlas   1987415 Nov 28 00:23 log.47493029._002272.job.log.tgz.1
[2025-11-28 00:24:14] -rw------- 1 boincer umatlas      8677 Nov 28 00:23 heartbeat.json
[2025-11-28 00:24:14] -rw-r--r-- 1 boincer umatlas      8192 Nov 28 00:23 boinc_mmap_file
[2025-11-28 00:24:14] -rw-r--r-- 1 boincer umatlas        29 Nov 28 00:23 wrapper_checkpoint.txt
[2025-11-28 00:24:14] -rw------- 1 boincer umatlas        96 Nov 28 00:24 pilot_heartbeat.json
[2025-11-28 00:24:14] -rw------- 1 boincer umatlas       745 Nov 28 00:24 pilotlog.txt
[2025-11-28 00:24:14] -rw------- 1 boincer umatlas   6231098 Nov 28 00:24 log.47493029._002272.job.log.1
[2025-11-28 00:24:14] -rw------- 1 boincer umatlas       353 Nov 28 00:24 output.list
[2025-11-28 00:24:14] -rw-r--r-- 1 boincer umatlas       620 Nov 28 00:24 runtime_log
[2025-11-28 00:24:14] -rw------- 1 boincer umatlas   8243200 Nov 28 00:24 result.tar.gz
[2025-11-28 00:24:14] -rw-r--r-- 1 boincer umatlas      8789 Nov 28 00:24 runtime_log.err
[2025-11-28 00:24:14] -rw------- 1 boincer umatlas       793 Nov 28 00:24 9uNKDm8rrf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmZuGKDm9CMYcm.diag
[2025-11-28 00:24:14] -rw-r--r-- 1 boincer umatlas     23466 Nov 28 00:24 stderr.txt
[2025-11-28 00:24:14] HITS file was successfully produced:
[2025-11-28 00:24:14] -rw------- 1 boincer umatlas 906796933 Nov 28 00:22 shared/HITS.pool.root.1
[2025-11-28 00:24:14]  *** Contents of shared directory: ***
[2025-11-28 00:24:14] total 1293040
[2025-11-28 00:24:14] -rw-r--r-- 3 boincer umatlas 408408596 Nov 27 03:16 ATLAS.root_0
[2025-11-28 00:24:14] -rw-r--r-- 2 boincer umatlas    590083 Nov 27 03:16 input.tar.gz
[2025-11-28 00:24:14] -rw-r--r-- 2 boincer umatlas     15120 Nov 27 03:16 start_atlas.sh
[2025-11-28 00:24:14] -rw------- 1 boincer umatlas 906796933 Nov 28 00:22 HITS.pool.root.1
[2025-11-28 00:24:14] -rw------- 1 boincer umatlas   8243200 Nov 28 00:24 result.tar.gz
00:24:15 (15107): run_atlas exited; CPU time 343011.100581
00:24:15 (15107): called boinc_finish(0)

</stderr_txt>
]]>

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