Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
09:01:35 (3357077): wrapper (7.7.26015): starting
09:01:35 (3357077): wrapper: running run_atlas (--nthreads 3)
[2025-11-27 09:01:35] Arguments: --nthreads 3
[2025-11-27 09:01:35] Threads: 3
[2025-11-27 09:01:35] Checking for CVMFS
[2025-11-27 09:01:35] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 09:01:36] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 09:01:36] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 09:01:36] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 09:01:36] 2.9.2.0 3252557 22 54156 153354 1 16 35936474 36864000 0 130560 0 313030 100.000 1296 13642 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-27 09:01:36] CVMFS is ok
[2025-11-27 09:01:36] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 09:01:36] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 09:01:36] Further information can be found at the LHC@home message board.
[2025-11-27 09:01:36] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 09:01:36] Checking for apptainer binary...
[2025-11-27 09:01:36] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 09:01:36] Running /usr/bin/apptainer --version
[2025-11-27 09:01:36] apptainer version 1.4.1-1.1
[2025-11-27 09:01:36] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 09:01:36] thA335
[2025-11-27 09:01:36] apptainer works
[2025-11-27 09:01:36] Set ATHENA_PROC_NUMBER=3
[2025-11-27 09:01:36] Set ATHENA_CORE_NUMBER=3
[2025-11-27 09:01:36] Starting ATLAS job with PandaID=6896990018
[2025-11-27 09:01:36] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 09:05:51]  *** The last 200 lines of the pilot log: ***
[2025-11-27 09:05:51] 2025-11-27 08:05:02,559 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 09:05:51] 2025-11-27 08:05:02,655 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 09:05:51] 2025-11-27 08:05:02,885 | INFO     | all data control threads have been joined
[2025-11-27 09:05:51] 2025-11-27 08:05:02,998 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-27 09:05:51] 2025-11-27 08:05:02,999 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-27 09:05:51] 2025-11-27 08:05:02,999 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 09:05:51] 2025-11-27 08:05:03,000 | INFO     | will abort loop
[2025-11-27 09:05:51] 2025-11-27 08:05:03,288 | INFO     | all job control threads have been joined
[2025-11-27 09:05:51] 2025-11-27 08:05:03,562 | INFO     | [job] queue monitor thread has finished
[2025-11-27 09:05:51] 2025-11-27 08:05:03,563 | INFO     | [job] retrieve thread has finished
[2025-11-27 09:05:51] 2025-11-27 08:05:03,605 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 09:05:51] 2025-11-27 08:05:03,779 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 09:05:51] 2025-11-27 08:05:03,891 | INFO     | [data] control thread has finished
[2025-11-27 09:05:51] 2025-11-27 08:05:03,955 | INFO     | [data] copytool_in thread has finished
[2025-11-27 09:05:51] 2025-11-27 08:05:04,006 | INFO     | [job] job monitor thread has finished
[2025-11-27 09:05:51] 2025-11-27 08:05:04,039 | INFO     | all payload control threads have been joined
[2025-11-27 09:05:51] 2025-11-27 08:05:04,141 | INFO     | [payload] failed_post thread has finished
[2025-11-27 09:05:51] 2025-11-27 08:05:04,294 | INFO     | [job] control thread has finished
[2025-11-27 09:05:51] 2025-11-27 08:05:04,339 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 09:05:51] 2025-11-27 08:05:04,565 | INFO     | [data] copytool_out thread has finished
[2025-11-27 09:05:51] 2025-11-27 08:05:04,802 | INFO     | [payload] validate_post thread has finished
[2025-11-27 09:05:51] 2025-11-27 08:05:04,984 | INFO     | [job] validate thread has finished
[2025-11-27 09:05:51] 2025-11-27 08:05:05,045 | INFO     | [payload] control thread has finished
[2025-11-27 09:05:51] 2025-11-27 08:05:05,064 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 09:05:51] 2025-11-27 08:05:06,662 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 09:05:51] 2025-11-27 08:05:32,089 | INFO     | PID=3360825 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 09:05:51] 2025-11-27 08:05:32,089 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 09:05:51] 2025-11-27 08:05:32,089 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 09:05:51] 2025-11-27 08:05:32,089 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 09:05:51] 2025-11-27 08:05:45,282 | INFO     | [monitor] cgroup control has ended
[2025-11-27 09:05:51] 2025-11-27 08:05:46,830 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140395305682752)>', '<ExcThread(monitor, started 140394687883008)>']
[2025-11-27 09:05:51] 2025-11-27 08:05:47,169 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 09:05:51] 2025-11-27 08:05:47,169 | INFO     | [monitor] control thread has ended
[2025-11-27 09:05:51] 2025-11-27 08:05:51,855 | INFO     | all workflow threads have been joined
[2025-11-27 09:05:51] 2025-11-27 08:05:51,855 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 09:05:51] 2025-11-27 08:05:51,856 | INFO     | traces error code: 0
[2025-11-27 09:05:51] 2025-11-27 08:05:51,856 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 09:05:51] 2025-11-27 08:05:51,902 [wrapper] ==== pilot stdout END ====
[2025-11-27 09:05:51] 2025-11-27 08:05:51,906 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 09:05:51] 2025-11-27 08:05:51,908 [wrapper] pilotpid: 3360825
[2025-11-27 09:05:51] 2025-11-27 08:05:51,911 [wrapper] Pilot exit status: 0
[2025-11-27 09:05:51] 2025-11-27 08:05:51,918 [wrapper] pandaids: 6896990018
[2025-11-27 09:05:51] 2025-11-27 08:05:51,935 [wrapper] cleanup supervisor_pilot 3360831 3360826
[2025-11-27 09:05:51] 2025-11-27 08:05:51,938 [wrapper] Test setup, not cleaning
[2025-11-27 09:05:51] 2025-11-27 08:05:51,940 [wrapper] apfmon messages muted
[2025-11-27 09:05:51] 2025-11-27 08:05:51,943 [wrapper] ==== wrapper stdout END ====
[2025-11-27 09:05:51] 2025-11-27 08:05:51,945 [wrapper] ==== wrapper stderr END ====
[2025-11-27 09:05:51]  *** Error codes and diagnostics ***
[2025-11-27 09:05:51]     "exeErrorCode": 65,
[2025-11-27 09:05:51]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-27 09:05:51]     "pilotErrorCode": 1305,
[2025-11-27 09:05:51]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-27 09:05:51]  *** Listing of results directory ***
[2025-11-27 09:05:51] total 403640
[2025-11-27 09:05:51] -rw-r--r-- 1 boinc boinc    576529 Nov 25 13:49 pilot3.tar.gz
[2025-11-27 09:05:51] -rwx------ 1 boinc boinc     36292 Nov 25 14:04 runpilot2-wrapper.sh
[2025-11-27 09:05:51] -rw-r--r-- 1 boinc boinc      5112 Nov 25 14:04 queuedata.json
[2025-11-27 09:05:51] -rw-r--r-- 1 boinc boinc       100 Nov 27 09:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 09:05:51] -rwxr-xr-x 1 boinc boinc      7986 Nov 27 09:01 run_atlas
[2025-11-27 09:05:51] -rw-r--r-- 1 boinc boinc       105 Nov 27 09:01 job.xml
[2025-11-27 09:05:51] -rw-r--r-- 2 boinc boinc 409129904 Nov 27 09:01 EVNT.47483658._003081.pool.root.1
[2025-11-27 09:05:51] -rw-r--r-- 2 boinc boinc    590106 Nov 27 09:01 input.tar.gz
[2025-11-27 09:05:51] -rw-r--r-- 2 boinc boinc     15847 Nov 27 09:01 start_atlas.sh
[2025-11-27 09:05:51] drwxrwx--x 2 boinc boinc      4096 Nov 27 09:01 shared
[2025-11-27 09:05:51] -rw-r--r-- 1 boinc boinc         0 Nov 27 09:01 boinc_setup_complete
[2025-11-27 09:05:51] -rw-r--r-- 1 boinc boinc      6196 Nov 27 09:01 init_data.xml
[2025-11-27 09:05:51] -rw-r--r-- 1 boinc boinc         0 Nov 27 09:01 boinc_lockfile
[2025-11-27 09:05:51] -rw-r--r-- 1 boinc boinc      2783 Nov 27 09:01 pandaJob.out
[2025-11-27 09:05:51] -rw------- 1 boinc boinc    991570 Nov 27 09:01 agis_schedconf.cvmfs.json
[2025-11-27 09:05:51] -rw------- 1 boinc boinc   1516240 Nov 27 09:01 agis_ddmendpoints.agis.ALL.json
[2025-11-27 09:05:51] drwx------ 5 boinc boinc      4096 Nov 27 09:01 pilot3
[2025-11-27 09:05:51] -rw-r--r-- 1 boinc boinc       523 Nov 27 09:02 boinc_task_state.xml
[2025-11-27 09:05:51] -rw------- 1 boinc boinc       950 Nov 27 09:02 memory_monitor_summary.json
[2025-11-27 09:05:51] -rw------- 1 boinc boinc     55808 Nov 27 09:02 log.47556173._000638.job.log.tgz.1
[2025-11-27 09:05:51] -rw------- 1 boinc boinc        95 Nov 27 09:04 pilot_heartbeat.json
[2025-11-27 09:05:51] -rw------- 1 boinc boinc      8401 Nov 27 09:05 heartbeat.json
[2025-11-27 09:05:51] -rw-r--r-- 1 boinc boinc      8192 Nov 27 09:05 boinc_mmap_file
[2025-11-27 09:05:51] -rw-r--r-- 1 boinc boinc        23 Nov 27 09:05 wrapper_checkpoint.txt
[2025-11-27 09:05:51] -rw------- 1 boinc boinc      4938 Nov 27 09:05 pilotlog.txt
[2025-11-27 09:05:51] -rw------- 1 boinc boinc     93885 Nov 27 09:05 log.47556173._000638.job.log.1
[2025-11-27 09:05:51] -rw------- 1 boinc boinc       186 Nov 27 09:05 output.list
[2025-11-27 09:05:51] -rw-r--r-- 1 boinc boinc       620 Nov 27 09:05 runtime_log
[2025-11-27 09:05:51] -rw------- 1 boinc boinc    174080 Nov 27 09:05 result.tar.gz
[2025-11-27 09:05:51] -rw-r--r-- 1 boinc boinc      8744 Nov 27 09:05 runtime_log.err
[2025-11-27 09:05:51] -rw------- 1 boinc boinc       649 Nov 27 09:05 lUxMDmut7h8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmLOMKDmRfGkcn.diag
[2025-11-27 09:05:51] -rw-r--r-- 1 boinc boinc      7669 Nov 27 09:05 stderr.txt
[2025-11-27 09:05:51] No HITS result produced
[2025-11-27 09:05:51]  *** Contents of shared directory: ***
[2025-11-27 09:05:51] total 400316
[2025-11-27 09:05:51] -rw-r--r-- 2 boinc boinc 409129904 Nov 27 09:01 ATLAS.root_0
[2025-11-27 09:05:51] -rw-r--r-- 2 boinc boinc    590106 Nov 27 09:01 input.tar.gz
[2025-11-27 09:05:51] -rw-r--r-- 2 boinc boinc     15847 Nov 27 09:01 start_atlas.sh
[2025-11-27 09:05:51] -rw------- 1 boinc boinc    174080 Nov 27 09:05 result.tar.gz
09:05:53 (3357077): run_atlas exited; CPU time 32.313304
09:05:53 (3357077): called boinc_finish(0)

</stderr_txt>
]]>

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