Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
20:29:35 (3274796): wrapper (7.7.26015): starting
20:29:35 (3274796): wrapper: running run_atlas (--nthreads 12)
[2025-11-26 20:29:35] Arguments: --nthreads 12
[2025-11-26 20:29:35] Threads: 12
[2025-11-26 20:29:35] Checking for CVMFS
[2025-11-26 20:29:36] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 20:29:37] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 20:29:37] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 20:29:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 20:29:38] 2.11.5.0 4091557 29060 225240 153347 0 294 27337078 45568000 31263 130560 0 218058473 99.753 152005486 21754 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-11-26 20:29:38] CVMFS is ok
[2025-11-26 20:29:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 20:29:38] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 20:29:38] Further information can be found at the LHC@home message board.
[2025-11-26 20:29:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 20:29:38] Checking for apptainer binary...
[2025-11-26 20:29:38] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 20:29:38] Running /usr/bin/apptainer --version
[2025-11-26 20:29:38] apptainer version 1.4.1-1.el9
[2025-11-26 20:29:38] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 20:29:38] wns0073.triumf.lcg
[2025-11-26 20:29:38] apptainer works
[2025-11-26 20:29:39] Set ATHENA_PROC_NUMBER=12
[2025-11-26 20:29:39] Set ATHENA_CORE_NUMBER=12
[2025-11-26 20:29:39] Starting ATLAS job with PandaID=6898178283
[2025-11-26 20:29:39] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 20:37:23]  *** The last 200 lines of the pilot log: ***
[2025-11-26 20:37:23] 2025-11-27 04:36:39,631 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-26 20:37:23] 2025-11-27 04:36:39,632 | WARNING  | wrong length of table data, x=[1764217902.0, 1764217963.0, 1764218024.0], y=[2416.0, 610964.0, 518598.0] (must be same and length>=4)
[2025-11-26 20:37:23] 2025-11-27 04:36:39,633 | INFO     | could have reported an average CPU frequency of 1340 MHz (4 samples)
[2025-11-26 20:37:23] 2025-11-27 04:36:39,633 | INFO     | ..............................
[2025-11-26 20:37:23] 2025-11-27 04:36:39,633 | INFO     | . Timing measurements:
[2025-11-26 20:37:23] 2025-11-27 04:36:39,634 | INFO     | . get job = 0 s
[2025-11-26 20:37:23] 2025-11-27 04:36:39,634 | INFO     | . initial setup = 3 s
[2025-11-26 20:37:23] 2025-11-27 04:36:39,634 | INFO     | . payload setup = 23 s
[2025-11-26 20:37:23] 2025-11-27 04:36:39,634 | INFO     | . stage-in = 0 s
[2025-11-26 20:37:23] 2025-11-27 04:36:39,634 | INFO     | . payload execution = 186 s
[2025-11-26 20:37:23] 2025-11-27 04:36:39,634 | INFO     | . stage-out = 0 s
[2025-11-26 20:37:23] 2025-11-27 04:36:39,634 | INFO     | . log creation = 0 s
[2025-11-26 20:37:23] 2025-11-27 04:36:39,634 | INFO     | ..............................
[2025-11-26 20:37:23] 2025-11-27 04:36:39,634 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-26 20:37:23] 2025-11-27 04:36:39,635 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6898178283/pilotlog.txt
[2025-11-26 20:37:23] 2025-11-27 04:36:39,688 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-26 20:37:23] - Log from pilotlog.txt -
[2025-11-26 20:37:23] 2025-11-27 04:36:39,630 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6898178283/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 20:37:23] 2025-11-27 04:36:39,631 | INFO     | extracted standard info from prmon json
[2025-11-26 20:37:23] 2025-11-27 04:36:39,631 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 20:37:23] 2025-11-27 04:36:39,631 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 20:37:23] 2025-11-27 04:36:39,631 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-26 20:37:23] 2025-11-27 04:36:39,631 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-26 20:37:23] 2025-11-27 04:36:39,632 | WARNING  | wrong length of table data, x=[1764217902.0, 1764217963.0, 1764218024.0], y=[2416.0, 610964.0, 518598.0] (must be same and length>=4)
[2025-11-26 20:37:23] 2025-11-27 04:36:39,633 | INFO     | could have reported an average CPU frequency of 1340 MHz (4 samples)
[2025-11-26 20:37:23] 2025-11-27 04:36:39,633 | INFO     | ..............................
[2025-11-26 20:37:23] 2025-11-27 04:36:39,633 | INFO     | . Timing measurements:
[2025-11-26 20:37:23] 2025-11-27 04:36:39,634 | INFO     | . get job = 0 s
[2025-11-26 20:37:23] 2025-11-27 04:36:39,634 | INFO     | . initial setup = 3 s
[2025-11-26 20:37:23] 2025-11-27 04:36:39,634 | INFO     | . payload setup = 23 s
[2025-11-26 20:37:23] 2025-11-27 04:36:39,634 | INFO     | . stage-in = 0 s
[2025-11-26 20:37:23] 2025-11-27 04:36:39,634 | INFO     | . payload execution = 186 s
[2025-11-26 20:37:23] 2025-11-27 04:36:39,634 | INFO     | . stage-out = 0 s
[2025-11-26 20:37:23] 2025-11-27 04:36:39,634 | INFO     | . log creation = 0 s
[2025-11-26 20:37:23] 2025-11-27 04:36:39,634 | INFO     | ..............................
[2025-11-26 20:37:23] 2025-11-27 04:36:39,634 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-26 20:37:23] 2025-11-27 04:36:39,635 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6898178283/pilotlog.txt
[2025-11-26 20:37:23] 2025-11-27 04:36:39,689 | WARNING  | 
[2025-11-26 20:37:23] [begin log extracts]
[2025-11-26 20:37:23] - Log from pilotlog.txt -
[2025-11-26 20:37:23] 2025-11-27 04:36:39,630 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6898178283/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 20:37:23] 2025-11-27 04:36:39,631 | INFO     | extracted standard info from prmon json
[2025-11-26 20:37:23] 2025-11-27 04:36:39,631 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 20:37:23] 2025-11-27 04:36:39,631 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 20:37:23] 2025-11-27 04:36:39,631 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-26 20:37:23] 2025-11-27 04:36:39,631 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-26 20:37:23] 2025-11-27 04:36:39,632 | WARNING  | wrong length of table data, x=[1764217902.0, 1764217963.0, 1764218024.0], y=[2416.0, 610964.0, 518598.0] (must be same and length>=4)
[2025-11-26 20:37:23] 2025-11-27 04:36:39,633 | INFO     | could have reported an average CPU frequency of 1340 MHz (4 samples)
[2025-11-26 20:37:23] 2025-11-27 04:36:39,633 | INFO     | ..............................
[2025-11-26 20:37:23] 2025-11-27 04:36:39,633 | INFO     | . Timing measurements:
[2025-11-26 20:37:23] 2025-11-27 04:36:39,634 | INFO     | . get job = 0 s
[2025-11-26 20:37:23] 2025-11-27 04:36:39,634 | INFO     | . initial setup = 3 s
[2025-11-26 20:37:23] 2025-11-27 04:36:39,634 | INFO     | . payload setup = 23 s
[2025-11-26 20:37:23] 2025-11-27 04:36:39,634 | INFO     | . stage-in = 0 s
[2025-11-26 20:37:23] 2025-11-27 04:36:39,634 | INFO     | . payload execution = 186 s
[2025-11-26 20:37:23] 2025-11-27 04:36:39,634 | INFO     | . stage-out = 0 s
[2025-11-26 20:37:23] 2025-11-27 04:36:39,634 | INFO     | . log creation = 0 s
[2025-11-26 20:37:23] 2025-11-27 04:36:39,634 | INFO     | ..............................
[2025-11-26 20:37:23] 2025-11-27 04:36:39,634 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-26 20:37:23] 2025-11-27 04:36:39,635 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6898178283/pilotlog.txt
[2025-11-26 20:37:23] [end log extracts]
[2025-11-26 20:37:23] 2025-11-27 04:36:39,689 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-26 20:37:23] 2025-11-27 04:36:39,690 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-26 20:37:23] 2025-11-27 04:36:40,050 | INFO     | 
[2025-11-26 20:37:23] 2025-11-27 04:36:40,051 | INFO     | job summary report
[2025-11-26 20:37:23] 2025-11-27 04:36:40,051 | INFO     | --------------------------------------------------
[2025-11-26 20:37:23] 2025-11-27 04:36:40,051 | INFO     | PanDA job id: 6898178283
[2025-11-26 20:37:23] 2025-11-27 04:36:40,052 | INFO     | task id: 47556161
[2025-11-26 20:37:23] 2025-11-27 04:36:40,052 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-26 20:34:20,389 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-26 20:37:23] 2025-11-27 04:36:40,052 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-26 20:37:23] 2025-11-27 04:36:40,052 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 20:37:23] 2025-11-27 04:36:40,052 | INFO     | pilot state: failed 
[2025-11-26 20:37:23] 2025-11-27 04:36:40,052 | INFO     | transexitcode: 65
[2025-11-26 20:37:23] 2025-11-27 04:36:40,052 | INFO     | exeerrorcode: 65
[2025-11-26 20:37:23] 2025-11-27 04:36:40,052 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2025-11-26 20:37:23] 2025-11-27 04:36:40,052 | INFO     | exitcode: 65
[2025-11-26 20:37:23] 2025-11-27 04:36:40,053 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2025-11-26 20:37:23] 2025-11-27 04:36:40,053 | INFO     | cpuconsumptiontime: 78 s
[2025-11-26 20:37:23] 2025-11-27 04:36:40,053 | INFO     | nevents: 0
[2025-11-26 20:37:23] 2025-11-27 04:36:40,053 | INFO     | neventsw: 0
[2025-11-26 20:37:23] 2025-11-27 04:36:40,053 | INFO     | pid: 3285976
[2025-11-26 20:37:23] 2025-11-27 04:36:40,053 | INFO     | pgrp: 3285976
[2025-11-26 20:37:23] 2025-11-27 04:36:40,053 | INFO     | corecount: 12
[2025-11-26 20:37:23] 2025-11-27 04:36:40,053 | INFO     | event service: False
[2025-11-26 20:37:23] 2025-11-27 04:36:40,053 | INFO     | sizes: {0: 2284034, 1: 2284289, 12: 2284289, 19: 2284579, 23: 2284607, 213: 2310216, 214: 2314506, 216: 2314534, 345: 2314700}
[2025-11-26 20:37:23] 2025-11-27 04:36:40,053 | INFO     | --------------------------------------------------
[2025-11-26 20:37:23] 2025-11-27 04:36:40,053 | INFO     | 
[2025-11-26 20:37:23] 2025-11-27 04:36:40,054 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-26 20:37:23] 2025-11-27 04:36:40,123 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 20:37:23] 2025-11-27 04:36:40,123 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 20:37:23] 2025-11-27 04:36:40,123 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 20:37:23] 2025-11-27 04:36:40,123 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 20:37:23] 2025-11-27 04:36:40,123 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 20:37:23] 2025-11-27 04:36:40,124 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 20:37:23] 2025-11-27 04:36:40,124 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 20:37:23] 2025-11-27 04:36:40,124 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 20:37:23] 2025-11-27 04:36:40,124 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 20:37:23] 2025-11-27 04:36:40,124 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 20:37:23] 2025-11-27 04:36:40,124 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 20:37:23] 2025-11-27 04:36:40,124 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 20:37:23] 2025-11-27 04:36:40,124 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 20:37:23] 2025-11-27 04:36:40,124 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 20:37:23] 2025-11-27 04:36:40,124 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 20:37:23] 2025-11-27 04:36:40,125 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 20:37:23] 2025-11-27 04:36:40,125 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 20:37:23] 2025-11-27 04:36:40,125 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 20:37:23] 2025-11-27 04:36:40,125 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 20:37:23] 2025-11-27 04:36:40,125 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 20:37:23] 2025-11-27 04:36:40,125 | INFO     | job 6898178283 has completed (purged errors)
[2025-11-26 20:37:23] 2025-11-27 04:36:40,125 | INFO     | overall cleanup function is called
[2025-11-26 20:37:23] 2025-11-27 04:36:41,166 | INFO     | --- collectZombieJob: --- 10, [3285976]
[2025-11-26 20:37:23] 2025-11-27 04:36:41,166 | INFO     | zombie collector waiting for pid 3285976
[2025-11-26 20:37:23] 2025-11-27 04:36:41,166 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 20:37:23] 2025-11-27 04:36:41,166 | INFO     | collected zombie processes
[2025-11-26 20:37:23] 2025-11-27 04:36:41,167 | INFO     | will attempt to kill all subprocesses of pid=3285976
[2025-11-26 20:37:23] 2025-11-27 04:36:42,166 | INFO     | process IDs to be killed: [3285976] (in reverse order)
[2025-11-26 20:37:23] 2025-11-27 04:36:42,368 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 20:37:23] 2025-11-27 04:36:42,368 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 20:37:23] 2025-11-27 04:36:42,419 | INFO     | did not find any defunct processes belonging to 3285976
[2025-11-26 20:37:23] 2025-11-27 04:36:42,473 | INFO     | did not find any defunct processes belonging to 3285976
[2025-11-26 20:37:23] 2025-11-27 04:36:42,474 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 20:37:23] 2025-11-27 04:36:42,475 | INFO     | ready for new job
[2025-11-26 20:37:23] 2025-11-27 04:36:42,475 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 20:37:23] 2025-11-27 04:36:42,480 | INFO     | ***************************************
[2025-11-26 20:37:23] 2025-11-27 04:36:42,480 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 20:37:23] 2025-11-27 04:36:42,480 | INFO     | ***************************************
[2025-11-26 20:37:23] 2025-11-27 04:36:42,480 | INFO     | 
[2025-11-26 20:37:23] 2025-11-27 04:36:42,499 | INFO     | architecture information:
[2025-11-26 20:37:23] 2025-11-27 04:36:42,505 | INFO     | executing command: cat /etc/os-release
[2025-11-26 20:37:23] 2025-11-27 04:36:42,559 | INFO     | cat /etc/os-release:
[2025-11-26 20:37:23] NAME="CentOS Linux"
[2025-11-26 20:37:23] VERSION="7 (Core)"
[2025-11-26 20:37:23] ID="centos"
[2025-11-26 20:37:23] ID_LIKE="rhel fedora"
[2025-11-26 20:37:23] VERSION_ID="7"
[2025-11-26 20:37:23] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 20:37:23] ANSI_COLOR="0;31"
[2025-11-26 20:37:23] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 20:37:23] HOME_URL="https://www.centos.org/"
[2025-11-26 20:37:23] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 20:37:23] 
[2025-11-26 20:37:23] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 20:37:23] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 20:37:23] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 20:37:23] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 20:37:23] 
[2025-11-26 20:37:23] 2025-11-27 04:36:42,559 | INFO     | ***************************************
[2025-11-26 20:37:23] 2025-11-27 04:36:43,063 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-26 20:37:23] 2025-11-27 04:36:43,110 | INFO     | sufficient remaining disk space (1029117575168 B)
[2025-11-26 20:37:23] 2025-11-27 04:36:43,111 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 20:37:23] 2025-11-27 04:36:43,111 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 20:37:23] 2025-11-27 04:36:43,111 | INFO     | update_server=False
[2025-11-26 20:37:23] 2025-11-27 04:36:43,111 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 20:37:23] 2025-11-27 04:36:43,112 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 20:37:23] 2025-11-27 04:36:43,116 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 20:37:23] 2025-11-27 04:36:43,116 | INFO     | aborting loop
[2025-11-26 20:37:23] 2025-11-27 04:36:43,652 | INFO     | all data control threads have been joined
[2025-11-26 20:37:23] 2025-11-27 04:36:43,739 | INFO     | all job control threads have been joined
[2025-11-26 20:37:23] 2025-11-27 04:36:43,847 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 20:37:23] 2025-11-27 04:36:44,117 | INFO     | [job] retrieve thread has finished
[2025-11-26 20:37:23] 2025-11-27 04:36:44,121 | INFO     | [job] job monitor thread has finished
[2025-11-26 20:37:23] 2025-11-27 04:36:44,228 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 20:37:23] 2025-11-27 04:36:44,256 | INFO     | all payload control threads have been joined
[2025-11-26 20:37:23] 2025-11-27 04:36:44,450 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 20:37:23] 2025-11-27 04:36:44,674 | INFO     | [data] control thread has finished
[2025-11-26 20:37:23] 2025-11-27 04:36:44,702 | INFO     | [payload] validate_post thread has finished
[2025-11-26 20:37:23] 2025-11-27 04:36:44,745 | INFO     | [job] control thread has finished
[2025-11-26 20:37:23] 2025-11-27 04:36:44,857 | INFO     | [data] copytool_in thread has finished
[2025-11-26 20:37:23] 2025-11-27 04:36:45,088 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 20:37:23] 2025-11-27 04:36:45,109 | INFO     | [job] validate thread has finished
[2025-11-26 20:37:23] 2025-11-27 04:36:45,117 | INFO     | [data] copytool_out thread has finished
[2025-11-26 20:37:23] 2025-11-27 04:36:45,262 | INFO     | [payload] control thread has finished
[2025-11-26 20:37:23] 2025-11-27 04:36:45,327 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 20:37:23] 2025-11-27 04:36:45,558 | INFO     | [payload] failed_post thread has finished
[2025-11-26 20:37:23] 2025-11-27 04:36:45,566 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 20:37:23] 2025-11-27 04:36:46,094 | INFO     | [job] queue monitor thread has finished
[2025-11-26 20:37:23] 2025-11-27 04:36:47,855 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 20:37:23] 2025-11-27 04:37:12,354 | INFO     | PID=3278954 has CPU usage=2.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 20:37:23] 2025-11-27 04:37:12,354 | INFO     | .. there are 32 such processes running
[2025-11-26 20:37:23] 2025-11-27 04:37:12,354 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 20:37:23] 2025-11-27 04:37:12,354 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 20:37:23] 2025-11-27 04:37:12,355 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 20:37:23] 2025-11-27 04:37:16,340 | INFO     | [monitor] cgroup control has ended
[2025-11-26 20:37:23] 2025-11-27 04:37:17,523 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140391022491456)>', '<ExcThread(monitor, started 140390619387648)>']
[2025-11-26 20:37:23] 2025-11-27 04:37:18,388 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 20:37:23] 2025-11-27 04:37:18,389 | INFO     | [monitor] control thread has ended
[2025-11-26 20:37:23] 2025-11-27 04:37:22,549 | INFO     | all workflow threads have been joined
[2025-11-26 20:37:23] 2025-11-27 04:37:22,549 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 20:37:23] 2025-11-27 04:37:22,550 | INFO     | traces error code: 0
[2025-11-26 20:37:23] 2025-11-27 04:37:22,550 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 20:37:23] 2025-11-27 04:37:22,760 [wrapper] ==== pilot stdout END ====
[2025-11-26 20:37:23] 2025-11-27 04:37:22,764 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 20:37:23] 2025-11-27 04:37:22,767 [wrapper] pilotpid: 3278954
[2025-11-26 20:37:23] 2025-11-27 04:37:22,770 [wrapper] Pilot exit status: 0
[2025-11-26 20:37:23] 2025-11-27 04:37:22,786 [wrapper] pandaids: 6898178283
[2025-11-26 20:37:23] 2025-11-27 04:37:22,872 [wrapper] cleanup supervisor_pilot 3278960 3278955
[2025-11-26 20:37:23] 2025-11-27 04:37:22,876 [wrapper] Test setup, not cleaning
[2025-11-26 20:37:23] 2025-11-27 04:37:22,898 [wrapper] apfmon messages muted
[2025-11-26 20:37:23] 2025-11-27 04:37:22,907 [wrapper] ==== wrapper stdout END ====
[2025-11-26 20:37:23] 2025-11-27 04:37:22,911 [wrapper] ==== wrapper stderr END ====
[2025-11-26 20:37:23]  *** Error codes and diagnostics ***
[2025-11-26 20:37:23]     "exeErrorCode": 65,
[2025-11-26 20:37:23]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2025-11-26 20:37:23]     "pilotErrorCode": 1305,
[2025-11-26 20:37:23]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2025-11-26 20:37:23]  *** Listing of results directory ***
[2025-11-26 20:37:23] total 404888
[2025-11-26 20:37:23] -rw-r--r--. 1 boinc boinc    576529 Nov 25 19:33 pilot3.tar.gz
[2025-11-26 20:37:23] -rw-r--r--. 1 boinc boinc      5112 Nov 25 20:06 queuedata.json
[2025-11-26 20:37:23] -rwx------. 1 boinc boinc     36292 Nov 25 20:06 runpilot2-wrapper.sh
[2025-11-26 20:37:23] -rw-r--r--. 1 boinc boinc       100 Nov 26 20:29 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 20:37:23] -rwxr-xr-x. 1 boinc boinc      7986 Nov 26 20:29 run_atlas
[2025-11-26 20:37:23] -rw-r--r--. 1 boinc boinc       105 Nov 26 20:29 job.xml
[2025-11-26 20:37:23] -rw-r--r--. 2 boinc boinc 410363405 Nov 26 20:29 EVNT.47483658._002472.pool.root.1
[2025-11-26 20:37:23] -rw-r--r--. 1 boinc boinc      6595 Nov 26 20:29 init_data.xml
[2025-11-26 20:37:23] -rw-r--r--. 2 boinc boinc     15847 Nov 26 20:29 start_atlas.sh
[2025-11-26 20:37:23] drwxrwx--x. 2 boinc boinc      4096 Nov 26 20:29 shared
[2025-11-26 20:37:23] -rw-r--r--. 2 boinc boinc    590104 Nov 26 20:29 input.tar.gz
[2025-11-26 20:37:23] -rw-r--r--. 1 boinc boinc         0 Nov 26 20:29 boinc_lockfile
[2025-11-26 20:37:23] -rw-r--r--. 1 boinc boinc      2785 Nov 26 20:29 pandaJob.out
[2025-11-26 20:37:23] -rw-------. 1 boinc boinc    991570 Nov 26 20:30 agis_schedconf.cvmfs.json
[2025-11-26 20:37:23] -rw-------. 1 boinc boinc   1516240 Nov 26 20:30 agis_ddmendpoints.agis.ALL.json
[2025-11-26 20:37:23] drwx------. 5 boinc boinc      4096 Nov 26 20:30 pilot3
[2025-11-26 20:37:23] -rw-r--r--. 1 boinc boinc       524 Nov 26 20:34 boinc_task_state.xml
[2025-11-26 20:37:23] -rw-------. 1 boinc boinc      1021 Nov 26 20:34 memory_monitor_summary.json
[2025-11-26 20:37:23] -rw-------. 1 boinc boinc     50567 Nov 26 20:34 log.47556161._004547.job.log.tgz.1
[2025-11-26 20:37:23] -rw-------. 1 boinc boinc        95 Nov 26 20:36 pilot_heartbeat.json
[2025-11-26 20:37:23] -rw-------. 1 boinc boinc     10344 Nov 26 20:36 heartbeat.json
[2025-11-26 20:37:23] -rw-------. 1 boinc boinc      4823 Nov 26 20:37 pilotlog.txt
[2025-11-26 20:37:23] -rw-r--r--. 1 boinc boinc        23 Nov 26 20:37 wrapper_checkpoint.txt
[2025-11-26 20:37:23] -rw-r--r--. 1 boinc boinc      8192 Nov 26 20:37 boinc_mmap_file
[2025-11-26 20:37:23] -rw-------. 1 boinc boinc    113054 Nov 26 20:37 log.47556161._004547.job.log.1
[2025-11-26 20:37:23] -rw-------. 1 boinc boinc       186 Nov 26 20:37 output.list
[2025-11-26 20:37:23] -rw-r--r--. 1 boinc boinc       620 Nov 26 20:37 runtime_log
[2025-11-26 20:37:23] -rw-------. 1 boinc boinc    184320 Nov 26 20:37 result.tar.gz
[2025-11-26 20:37:23] -rw-------. 1 boinc boinc       647 Nov 26 20:37 SKdLDmuyLi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmYvMKDmDIuHbn.diag
[2025-11-26 20:37:23] -rw-r--r--. 1 boinc boinc      8636 Nov 26 20:37 runtime_log.err
[2025-11-26 20:37:23] -rw-r--r--. 1 boinc boinc     22573 Nov 26 20:37 stderr.txt
[2025-11-26 20:37:23] No HITS result produced
[2025-11-26 20:37:23]  *** Contents of shared directory: ***
[2025-11-26 20:37:23] total 401528
[2025-11-26 20:37:23] -rw-r--r--. 2 boinc boinc 410363405 Nov 26 20:29 ATLAS.root_0
[2025-11-26 20:37:23] -rw-r--r--. 2 boinc boinc     15847 Nov 26 20:29 start_atlas.sh
[2025-11-26 20:37:23] -rw-r--r--. 2 boinc boinc    590104 Nov 26 20:29 input.tar.gz
[2025-11-26 20:37:23] -rw-------. 1 boinc boinc    184320 Nov 26 20:37 result.tar.gz
20:37:24 (3274796): run_atlas exited; CPU time 80.427461
20:37:24 (3274796): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN