Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:04:21 (809695): wrapper (7.7.26015): starting
00:04:21 (809695): wrapper: running run_atlas (--nthreads 12)
[2025-11-27 00:04:21] Arguments: --nthreads 12
[2025-11-27 00:04:21] Threads: 12
[2025-11-27 00:04:21] Checking for CVMFS
[2025-11-27 00:04:22] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 00:04:22] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 00:04:22] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 00:04:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 00:04:23] 2.13.2.0 7156 36335 248504 153347 2 726 36579218 40960001 35164 16776704 0 171742232 99.660 160258188 37959 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-27 00:04:23] CVMFS is ok
[2025-11-27 00:04:23] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 00:04:23] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 00:04:23] Further information can be found at the LHC@home message board.
[2025-11-27 00:04:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 00:04:23] Checking for apptainer binary...
[2025-11-27 00:04:23] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 00:04:23] Running /usr/bin/apptainer --version
[2025-11-27 00:04:23] apptainer version 1.4.4-1.el9
[2025-11-27 00:04:23] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 00:04:24] c-212-18.aglt2.org
[2025-11-27 00:04:24] apptainer works
[2025-11-27 00:04:24] Set ATHENA_PROC_NUMBER=12
[2025-11-27 00:04:24] Set ATHENA_CORE_NUMBER=12
[2025-11-27 00:04:24] Starting ATLAS job with PandaID=6895883561
[2025-11-27 00:04:24] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 10:32:31]  *** The last 200 lines of the pilot log: ***
[2025-11-27 10:32:31] 2025-11-27 15:31:04,674 | INFO     | monitor loop #2423: job 0:6895883561 is in state 'finished'
[2025-11-27 10:32:31] 2025-11-27 15:31:04,675 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 10:32:31] 2025-11-27 15:31:05,323 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 10:32:31] 2025-11-27 15:31:05,335 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3306.9122395833315
[2025-11-27 10:32:31] 2025-11-27 15:31:05,348 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6895883561/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 10:32:31] 2025-11-27 15:31:05,349 | INFO     | extracted standard info from prmon json
[2025-11-27 10:32:31] 2025-11-27 15:31:05,349 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 10:32:31] 2025-11-27 15:31:05,349 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 10:32:31] 2025-11-27 15:31:05,356 | INFO     | fitting pss+swap vs Time
[2025-11-27 10:32:31] 2025-11-27 15:31:05,359 | INFO     | sum of square deviations: 72123192324.9495
[2025-11-27 10:32:31] 2025-11-27 15:31:05,367 | INFO     | sum of deviations: 1428462972941.9739
[2025-11-27 10:32:31] 2025-11-27 15:31:05,367 | INFO     | mean x: 1764238705.3674796
[2025-11-27 10:32:31] 2025-11-27 15:31:05,367 | INFO     | mean y: 3411805.048780488
[2025-11-27 10:32:31] 2025-11-27 15:31:05,367 | INFO     | intersect: -34938880470.28546
[2025-11-27 10:32:31] 2025-11-27 15:31:05,368 | INFO     | chi2: 8.536041165534868
[2025-11-27 10:32:31] 2025-11-27 15:31:05,368 | INFO     | sum of square deviations: 70378495173.0229
[2025-11-27 10:32:31] 2025-11-27 15:31:05,376 | INFO     | sum of deviations: 1702164196487.734
[2025-11-27 10:32:31] 2025-11-27 15:31:05,377 | INFO     | mean x: 1764238552.8786886
[2025-11-27 10:32:31] 2025-11-27 15:31:05,377 | INFO     | mean y: 3435731.118032787
[2025-11-27 10:32:31] 2025-11-27 15:31:05,377 | INFO     | intersect: -42666185030.03371
[2025-11-27 10:32:31] 2025-11-27 15:31:05,377 | INFO     | chi2: 4.613391033956989
[2025-11-27 10:32:31] 2025-11-27 15:31:05,377 | INFO     | current chi2=4.613391033956989 (change=45.95397392664854 %)
[2025-11-27 10:32:31] 2025-11-27 15:31:05,378 | INFO     | sum of square deviations: 68662096473.49414
[2025-11-27 10:32:31] 2025-11-27 15:31:05,384 | INFO     | sum of deviations: 1778038702634.241
[2025-11-27 10:32:31] 2025-11-27 15:31:05,385 | INFO     | mean x: 1764238400.386777
[2025-11-27 10:32:31] 2025-11-27 15:31:05,385 | INFO     | mean y: 3442447.5801652893
[2025-11-27 10:32:31] 2025-11-27 15:31:05,385 | INFO     | intersect: -45682377206.53068
[2025-11-27 10:32:31] 2025-11-27 15:31:05,385 | INFO     | chi2: 3.9492410895932806
[2025-11-27 10:32:31] 2025-11-27 15:31:05,385 | INFO     | current chi2=3.9492410895932806 (change=14.396133765276236 %)
[2025-11-27 10:32:31] 2025-11-27 15:31:05,385 | INFO     | right removable region: 604
[2025-11-27 10:32:31] 2025-11-27 15:31:05,386 | INFO     | sum of square deviations: 70377982163.02289
[2025-11-27 10:32:31] 2025-11-27 15:31:05,392 | INFO     | sum of deviations: 1158769307190.525
[2025-11-27 10:32:31] 2025-11-27 15:31:05,393 | INFO     | mean x: 1764238857.8786886
[2025-11-27 10:32:31] 2025-11-27 15:31:05,393 | INFO     | mean y: 3435359.155737705
[2025-11-27 10:32:31] 2025-11-27 15:31:05,393 | INFO     | intersect: -29044652924.01197
[2025-11-27 10:32:31] 2025-11-27 15:31:05,393 | INFO     | chi2: 5.066500644518261
[2025-11-27 10:32:31] 2025-11-27 15:31:05,393 | INFO     | current chi2=5.066500644518261 (change=40.645780095639985 %)
[2025-11-27 10:32:31] 2025-11-27 15:31:05,394 | INFO     | sum of square deviations: 68661330684.79977
[2025-11-27 10:32:31] 2025-11-27 15:31:05,401 | INFO     | sum of deviations: 1079641467241.727
[2025-11-27 10:32:31] 2025-11-27 15:31:05,401 | INFO     | mean x: 1764239010.3818183
[2025-11-27 10:32:31] 2025-11-27 15:31:05,401 | INFO     | mean y: 3442387.247933884
[2025-11-27 10:32:31] 2025-11-27 15:31:05,401 | INFO     | intersect: -27737726837.650166
[2025-11-27 10:32:31] 2025-11-27 15:31:05,402 | INFO     | chi2: 4.934617635176126
[2025-11-27 10:32:31] 2025-11-27 15:31:05,402 | INFO     | current chi2=4.934617635176126 (change=2.6030394269233357 %)
[2025-11-27 10:32:31] 2025-11-27 15:31:05,402 | INFO     | left removable region: 20
[2025-11-27 10:32:31] 2025-11-27 15:31:05,403 | INFO     | sum of square deviations: 61756758231.83575
[2025-11-27 10:32:31] 2025-11-27 15:31:05,408 | INFO     | sum of deviations: 1285538687080.582
[2025-11-27 10:32:31] 2025-11-27 15:31:05,409 | INFO     | mean x: 1764238979.8972602
[2025-11-27 10:32:31] 2025-11-27 15:31:05,409 | INFO     | mean y: 3486383.426369863
[2025-11-27 10:32:31] 2025-11-27 15:31:05,409 | INFO     | intersect: -36721198118.29917
[2025-11-27 10:32:31] 2025-11-27 15:31:05,409 | INFO     | chi2: 0.11904050290728811
[2025-11-27 10:32:31] 2025-11-27 15:31:05,409 | INFO     | current memory leak: 20.82 B/s (using 584 data points, chi2=0.12)
[2025-11-27 10:32:31] 2025-11-27 15:31:05,410 | INFO     | could have reported an average CPU frequency of 3193 MHz (24 samples)
[2025-11-27 10:32:31] 2025-11-27 15:31:05,410 | INFO     | ..............................
[2025-11-27 10:32:31] 2025-11-27 15:31:05,410 | INFO     | . Timing measurements:
[2025-11-27 10:32:31] 2025-11-27 15:31:05,410 | INFO     | . get job = 0 s
[2025-11-27 10:32:31] 2025-11-27 15:31:05,410 | INFO     | . initial setup = 3 s
[2025-11-27 10:32:31] 2025-11-27 15:31:05,411 | INFO     | . payload setup = 23 s
[2025-11-27 10:32:31] 2025-11-27 15:31:05,411 | INFO     | . stage-in = 0 s
[2025-11-27 10:32:31] 2025-11-27 15:31:05,411 | INFO     | . payload execution = 37483 s
[2025-11-27 10:32:31] 2025-11-27 15:31:05,411 | INFO     | . stage-out = 4 s
[2025-11-27 10:32:31] 2025-11-27 15:31:05,411 | INFO     | . log creation = 1 s
[2025-11-27 10:32:31] 2025-11-27 15:31:05,411 | INFO     | ..............................
[2025-11-27 10:32:31] 2025-11-27 15:31:05,493 | INFO     | 
[2025-11-27 10:32:31] 2025-11-27 15:31:05,497 | INFO     | job summary report
[2025-11-27 10:32:31] 2025-11-27 15:31:05,498 | INFO     | --------------------------------------------------
[2025-11-27 10:32:31] 2025-11-27 15:31:05,498 | INFO     | PanDA job id: 6895883561
[2025-11-27 10:32:31] 2025-11-27 15:31:05,498 | INFO     | task id: 47556149
[2025-11-27 10:32:31] 2025-11-27 15:31:05,498 | INFO     | errors: (none)
[2025-11-27 10:32:31] 2025-11-27 15:31:05,498 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 10:32:31] 2025-11-27 15:31:05,498 | INFO     | pilot state: finished 
[2025-11-27 10:32:31] 2025-11-27 15:31:05,498 | INFO     | transexitcode: 0
[2025-11-27 10:32:31] 2025-11-27 15:31:05,498 | INFO     | exeerrorcode: 0
[2025-11-27 10:32:31] 2025-11-27 15:31:05,498 | INFO     | exeerrordiag: 
[2025-11-27 10:32:31] 2025-11-27 15:31:05,498 | INFO     | exitcode: 0
[2025-11-27 10:32:31] 2025-11-27 15:31:05,498 | INFO     | exitmsg: OK
[2025-11-27 10:32:31] 2025-11-27 15:31:05,498 | INFO     | cpuconsumptiontime: 192870 s
[2025-11-27 10:32:31] 2025-11-27 15:31:05,498 | INFO     | nevents: 1000
[2025-11-27 10:32:31] 2025-11-27 15:31:05,499 | INFO     | neventsw: 0
[2025-11-27 10:32:31] 2025-11-27 15:31:05,499 | INFO     | pid: 838360
[2025-11-27 10:32:31] 2025-11-27 15:31:05,499 | INFO     | pgrp: 838360
[2025-11-27 10:32:31] 2025-11-27 15:31:05,499 | INFO     | corecount: 12
[2025-11-27 10:32:31] 2025-11-27 15:31:05,499 | INFO     | event service: False
[2025-11-27 10:32:31] 2025-11-27 15:31:05,499 | INFO     | sizes: {0: 2284144, 1: 2284343, 2: 2284343, 12: 2284371, 17: 2284661, 23: 2284689, 37510: 2327750, 37515: 2336744, 37516: 2336800, 37529: 2337046}
[2025-11-27 10:32:31] 2025-11-27 15:31:05,499 | INFO     | --------------------------------------------------
[2025-11-27 10:32:31] 2025-11-27 15:31:05,499 | INFO     | 
[2025-11-27 10:32:31] 2025-11-27 15:31:05,499 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-27 10:32:31] 2025-11-27 15:31:05,528 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 10:32:31] 2025-11-27 15:31:05,528 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 10:32:31] 2025-11-27 15:31:05,528 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 10:32:31] 2025-11-27 15:31:05,528 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 10:32:31] 2025-11-27 15:31:05,529 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 10:32:31] 2025-11-27 15:31:05,529 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 10:32:31] 2025-11-27 15:31:05,529 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 10:32:31] 2025-11-27 15:31:05,529 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 10:32:31] 2025-11-27 15:31:05,529 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 10:32:31] 2025-11-27 15:31:05,529 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 10:32:31] 2025-11-27 15:31:05,529 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 10:32:31] 2025-11-27 15:31:05,529 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 10:32:31] 2025-11-27 15:31:05,529 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 10:32:31] 2025-11-27 15:31:05,529 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 10:32:31] 2025-11-27 15:31:05,529 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 10:32:31] 2025-11-27 15:31:05,529 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 10:32:31] 2025-11-27 15:31:05,529 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 10:32:31] 2025-11-27 15:31:05,529 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 10:32:31] 2025-11-27 15:31:05,530 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 10:32:31] 2025-11-27 15:31:05,530 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 10:32:31] 2025-11-27 15:31:05,530 | INFO     | job 6895883561 has completed (purged errors)
[2025-11-27 10:32:31] 2025-11-27 15:31:05,530 | INFO     | overall cleanup function is called
[2025-11-27 10:32:31] 2025-11-27 15:31:06,548 | INFO     | --- collectZombieJob: --- 10, [838360]
[2025-11-27 10:32:31] 2025-11-27 15:31:06,549 | INFO     | zombie collector waiting for pid 838360
[2025-11-27 10:32:31] 2025-11-27 15:31:06,549 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 10:32:31] 2025-11-27 15:31:06,549 | INFO     | collected zombie processes
[2025-11-27 10:32:31] 2025-11-27 15:31:06,549 | INFO     | will attempt to kill all subprocesses of pid=838360
[2025-11-27 10:32:31] 2025-11-27 15:31:08,154 | INFO     | process IDs to be killed: [838360] (in reverse order)
[2025-11-27 10:32:31] 2025-11-27 15:31:08,409 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 10:32:31] 2025-11-27 15:31:08,409 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 10:32:31] 2025-11-27 15:31:08,437 | INFO     | did not find any defunct processes belonging to 838360
[2025-11-27 10:32:31] 2025-11-27 15:31:08,457 | INFO     | did not find any defunct processes belonging to 838360
[2025-11-27 10:32:31] 2025-11-27 15:31:08,461 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 10:32:31] 2025-11-27 15:31:08,462 | INFO     | ready for new job
[2025-11-27 10:32:31] 2025-11-27 15:31:08,462 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 10:32:31] 2025-11-27 15:31:08,465 | INFO     | ***************************************
[2025-11-27 10:32:31] 2025-11-27 15:31:08,465 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 10:32:31] 2025-11-27 15:31:08,465 | INFO     | ***************************************
[2025-11-27 10:32:31] 2025-11-27 15:31:08,465 | INFO     | 
[2025-11-27 10:32:31] 2025-11-27 15:31:08,484 | INFO     | architecture information:
[2025-11-27 10:32:31] 2025-11-27 15:31:08,497 | INFO     | executing command: cat /etc/os-release
[2025-11-27 10:32:31] 2025-11-27 15:31:08,534 | INFO     | cat /etc/os-release:
[2025-11-27 10:32:31] NAME="CentOS Linux"
[2025-11-27 10:32:31] VERSION="7 (Core)"
[2025-11-27 10:32:31] ID="centos"
[2025-11-27 10:32:31] ID_LIKE="rhel fedora"
[2025-11-27 10:32:31] VERSION_ID="7"
[2025-11-27 10:32:31] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 10:32:31] ANSI_COLOR="0;31"
[2025-11-27 10:32:31] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 10:32:31] HOME_URL="https://www.centos.org/"
[2025-11-27 10:32:31] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 10:32:31] 
[2025-11-27 10:32:31] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 10:32:31] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 10:32:31] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 10:32:31] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 10:32:31] 
[2025-11-27 10:32:31] 2025-11-27 15:31:08,535 | INFO     | ***************************************
[2025-11-27 10:32:31] 2025-11-27 15:31:09,039 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-27 10:32:31] 2025-11-27 15:31:09,081 | INFO     | sufficient remaining disk space (121683050496 B)
[2025-11-27 10:32:31] 2025-11-27 15:31:09,082 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 10:32:31] 2025-11-27 15:31:09,082 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 10:32:31] 2025-11-27 15:31:09,082 | INFO     | update_server=False
[2025-11-27 10:32:31] 2025-11-27 15:31:09,082 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 10:32:31] 2025-11-27 15:31:09,093 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 10:32:31] 2025-11-27 15:31:09,094 | INFO     | aborting loop
[2025-11-27 10:32:31] 2025-11-27 15:31:09,302 | INFO     | all job control threads have been joined
[2025-11-27 10:32:31] 2025-11-27 15:31:09,503 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 10:32:31] 2025-11-27 15:31:10,005 | INFO     | all data control threads have been joined
[2025-11-27 10:32:31] 2025-11-27 15:31:10,087 | INFO     | [job] retrieve thread has finished
[2025-11-27 10:32:31] 2025-11-27 15:31:10,091 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 10:32:31] 2025-11-27 15:31:10,109 | INFO     | [job] job monitor thread has finished
[2025-11-27 10:32:31] 2025-11-27 15:31:10,110 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 10:32:31] 2025-11-27 15:31:10,223 | INFO     | all payload control threads have been joined
[2025-11-27 10:32:31] 2025-11-27 15:31:10,321 | INFO     | [job] control thread has finished
[2025-11-27 10:32:31] 2025-11-27 15:31:10,374 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 10:32:31] 2025-11-27 15:31:10,529 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 10:32:31] 2025-11-27 15:31:10,754 | INFO     | [data] copytool_in thread has finished
[2025-11-27 10:32:31] 2025-11-27 15:31:11,011 | INFO     | [data] control thread has finished
[2025-11-27 10:32:31] 2025-11-27 15:31:11,234 | INFO     | [payload] control thread has finished
[2025-11-27 10:32:31] 2025-11-27 15:31:11,255 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 10:32:31] 2025-11-27 15:31:11,274 | INFO     | [job] validate thread has finished
[2025-11-27 10:32:31] 2025-11-27 15:31:11,371 | INFO     | [payload] failed_post thread has finished
[2025-11-27 10:32:31] 2025-11-27 15:31:11,510 | INFO     | [data] copytool_out thread has finished
[2025-11-27 10:32:31] 2025-11-27 15:31:11,534 | INFO     | [job] queue monitor thread has finished
[2025-11-27 10:32:31] 2025-11-27 15:31:11,668 | INFO     | [payload] validate_post thread has finished
[2025-11-27 10:32:31] 2025-11-27 15:31:15,273 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 10:32:31] 2025-11-27 15:31:19,573 | INFO     | job.realtimelogging is not enabled
[2025-11-27 10:32:31] 2025-11-27 15:31:20,579 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 10:32:31] 2025-11-27 15:31:37,545 | INFO     | PID=816090 has CPU usage=3.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-27 10:32:31] 2025-11-27 15:31:37,545 | INFO     | .. there are 37 such processes running
[2025-11-27 10:32:31] 2025-11-27 15:31:37,545 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 10:32:31] 2025-11-27 15:31:37,545 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 10:32:31] 2025-11-27 15:31:37,546 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 10:32:31] 2025-11-27 15:32:03,873 | INFO     | [monitor] cgroup control has ended
[2025-11-27 10:32:31] 2025-11-27 15:32:05,597 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140066248800064)>', '<ExcThread(monitor, started 140065384687360)>']
[2025-11-27 10:32:31] 2025-11-27 15:32:05,728 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 10:32:31] 2025-11-27 15:32:05,729 | INFO     | [monitor] control thread has ended
[2025-11-27 10:32:31] 2025-11-27 15:32:10,623 | INFO     | all workflow threads have been joined
[2025-11-27 10:32:31] 2025-11-27 15:32:10,623 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 10:32:31] 2025-11-27 15:32:10,624 | INFO     | traces error code: 0
[2025-11-27 10:32:31] 2025-11-27 15:32:10,624 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 10:32:31] 2025-11-27 15:32:10,958 [wrapper] ==== pilot stdout END ====
[2025-11-27 10:32:31] 2025-11-27 15:32:10,964 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 10:32:31] 2025-11-27 15:32:10,972 [wrapper] pilotpid: 816090
[2025-11-27 10:32:31] 2025-11-27 15:32:10,985 [wrapper] Pilot exit status: 0
[2025-11-27 10:32:31] 2025-11-27 15:32:11,054 [wrapper] pandaids: 6895883561
[2025-11-27 10:32:31] 2025-11-27 15:32:11,229 [wrapper] cleanup supervisor_pilot   61384 816091
[2025-11-27 10:32:31] 2025-11-27 15:32:11,232 [wrapper] Test setup, not cleaning
[2025-11-27 10:32:31] 2025-11-27 15:32:11,235 [wrapper] apfmon messages muted
[2025-11-27 10:32:31] 2025-11-27 15:32:11,237 [wrapper] ==== wrapper stdout END ====
[2025-11-27 10:32:31] 2025-11-27 15:32:11,240 [wrapper] ==== wrapper stderr END ====
[2025-11-27 10:32:31]  *** Error codes and diagnostics ***
[2025-11-27 10:32:31]     "exeErrorCode": 0,
[2025-11-27 10:32:31]     "exeErrorDiag": "",
[2025-11-27 10:32:31]     "pilotErrorCode": 0,
[2025-11-27 10:32:31]     "pilotErrorDiag": "",
[2025-11-27 10:32:31]  *** Listing of results directory ***
[2025-11-27 10:32:31] total 1315544
[2025-11-27 10:32:31] -rw-r--r--. 1 boincer umatlas    576529 Nov 24 11:06 pilot3.tar.gz
[2025-11-27 10:32:31] -rw-r--r--. 1 boincer umatlas      5112 Nov 24 11:52 queuedata.json
[2025-11-27 10:32:31] -rwx------. 1 boincer umatlas     36292 Nov 24 11:53 runpilot2-wrapper.sh
[2025-11-27 10:32:31] -rw-r--r--. 1 boincer umatlas       100 Nov 27 00:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 10:32:31] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 27 00:04 run_atlas
[2025-11-27 10:32:31] -rw-r--r--. 1 boincer umatlas       105 Nov 27 00:04 job.xml
[2025-11-27 10:32:31] -rw-r--r--. 2 boincer umatlas 409618145 Nov 27 00:04 EVNT.47483658._001392.pool.root.1
[2025-11-27 10:32:31] drwxrwx--x. 2 boincer umatlas      4096 Nov 27 00:04 shared
[2025-11-27 10:32:31] -rw-r--r--. 2 boincer umatlas    590106 Nov 27 00:04 input.tar.gz
[2025-11-27 10:32:31] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 00:04 start_atlas.sh
[2025-11-27 10:32:31] -rw-r--r--. 1 boincer umatlas         0 Nov 27 00:04 boinc_lockfile
[2025-11-27 10:32:31] -rw-r--r--. 1 boincer umatlas      2786 Nov 27 00:04 pandaJob.out
[2025-11-27 10:32:31] -rw-------. 1 boincer umatlas        57 Nov 27 00:04 setup.sh.local
[2025-11-27 10:32:31] -rw-------. 1 boincer umatlas    991570 Nov 27 00:04 agis_schedconf.cvmfs.json
[2025-11-27 10:32:31] drwx------. 5 boincer umatlas      4096 Nov 27 00:04 pilot3
[2025-11-27 10:32:31] -rw-r--r--. 1 boincer umatlas       533 Nov 27 10:20 boinc_task_state.xml
[2025-11-27 10:32:31] -rw-------. 1 boincer umatlas 918973880 Nov 27 10:30 HITS.47556149._003789.pool.root.1
[2025-11-27 10:32:31] -rw-------. 1 boincer umatlas      1061 Nov 27 10:30 memory_monitor_summary.json
[2025-11-27 10:32:31] -rw-------. 1 boincer umatlas   1516240 Nov 27 10:30 agis_ddmendpoints.agis.ALL.json
[2025-11-27 10:32:31] -rw-------. 1 boincer umatlas   2300600 Nov 27 10:30 log.47556149._003789.job.log.tgz.1
[2025-11-27 10:32:31] -rw-------. 1 boincer umatlas        95 Nov 27 10:31 pilot_heartbeat.json
[2025-11-27 10:32:31] -rw-------. 1 boincer umatlas      8600 Nov 27 10:31 heartbeat.json
[2025-11-27 10:32:31] -rw-r--r--. 1 boincer umatlas      6949 Nov 27 10:31 init_data.xml
[2025-11-27 10:32:31] -rw-------. 1 boincer umatlas      4896 Nov 27 10:32 pilotlog.txt
[2025-11-27 10:32:31] -rw-------. 1 boincer umatlas   4999813 Nov 27 10:32 log.47556149._003789.job.log.1
[2025-11-27 10:32:31] -rw-------. 1 boincer umatlas       353 Nov 27 10:32 output.list
[2025-11-27 10:32:31] -rw-r--r--. 1 boincer umatlas       620 Nov 27 10:32 runtime_log
[2025-11-27 10:32:31] -rw-------. 1 boincer umatlas   7321600 Nov 27 10:32 result.tar.gz
[2025-11-27 10:32:31] -rw-r--r--. 1 boincer umatlas      9345 Nov 27 10:32 runtime_log.err
[2025-11-27 10:32:31] -rw-------. 1 boincer umatlas       663 Nov 27 10:32 cJOODm2zoh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm87IKDmaibFen.diag
[2025-11-27 10:32:31] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 10:32 boinc_mmap_file
[2025-11-27 10:32:31] -rw-r--r--. 1 boincer umatlas        29 Nov 27 10:32 wrapper_checkpoint.txt
[2025-11-27 10:32:31] -rw-r--r--. 1 boincer umatlas     21329 Nov 27 10:32 stderr.txt
[2025-11-27 10:32:31] HITS file was successfully produced:
[2025-11-27 10:32:31] -rw-------. 1 boincer umatlas 918973880 Nov 27 10:30 shared/HITS.pool.root.1
[2025-11-27 10:32:31]  *** Contents of shared directory: ***
[2025-11-27 10:32:31] total 1305212
[2025-11-27 10:32:31] -rw-r--r--. 2 boincer umatlas 409618145 Nov 27 00:04 ATLAS.root_0
[2025-11-27 10:32:31] -rw-r--r--. 2 boincer umatlas    590106 Nov 27 00:04 input.tar.gz
[2025-11-27 10:32:31] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 00:04 start_atlas.sh
[2025-11-27 10:32:31] -rw-------. 1 boincer umatlas 918973880 Nov 27 10:30 HITS.pool.root.1
[2025-11-27 10:32:31] -rw-------. 1 boincer umatlas   7321600 Nov 27 10:32 result.tar.gz
10:32:33 (809695): run_atlas exited; CPU time 192654.588524
10:32:33 (809695): called boinc_finish(0)

</stderr_txt>
]]>

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