Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
16:20:19 (3594762): wrapper (7.7.26015): starting
16:20:19 (3594762): wrapper: running run_atlas (--nthreads 11)
[2025-11-26 16:20:19] Arguments: --nthreads 11
[2025-11-26 16:20:19] Threads: 11
[2025-11-26 16:20:19] Checking for CVMFS
[2025-11-26 16:20:19] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 16:20:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 16:20:19] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 16:20:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 16:20:20] 2.13.2.0 2325231 31162 146596 153335 0 309 26322013 40960000 26574 16776704 0 222094198 99.712 182898377 51740 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-26 16:20:20] CVMFS is ok
[2025-11-26 16:20:20] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 16:20:20] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 16:20:20] Further information can be found at the LHC@home message board.
[2025-11-26 16:20:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 16:20:20] Checking for apptainer binary...
[2025-11-26 16:20:20] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 16:20:20] Running /usr/bin/apptainer --version
[2025-11-26 16:20:20] apptainer version 1.4.4-1.el9
[2025-11-26 16:20:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 16:20:21] c-208-37.aglt2.org
[2025-11-26 16:20:21] apptainer works
[2025-11-26 16:20:21] Set ATHENA_PROC_NUMBER=11
[2025-11-26 16:20:21] Set ATHENA_CORE_NUMBER=11
[2025-11-26 16:20:21] Starting ATLAS job with PandaID=6895375900
[2025-11-26 16:20:21] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 02:27:39]  *** The last 200 lines of the pilot log: ***
[2025-11-27 02:27:39] 2025-11-27 07:26:41,334 | INFO     | monitor loop #2150: job 0:6895375900 is in state 'finished'
[2025-11-27 02:27:39] 2025-11-27 07:26:41,335 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 02:27:39] 2025-11-27 07:26:43,151 | INFO     | time since job start (36324s) is within the limit (172800.0s)
[2025-11-27 02:27:39] 2025-11-27 07:26:43,839 | INFO     | monitor loop #2151: job 0:6895375900 is in state 'finished'
[2025-11-27 02:27:39] 2025-11-27 07:26:43,840 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 02:27:39] 2025-11-27 07:26:45,159 | INFO     | time since job start (36326s) is within the limit (172800.0s)
[2025-11-27 02:27:39] 2025-11-27 07:26:46,344 | INFO     | monitor loop #2152: job 0:6895375900 is in state 'finished'
[2025-11-27 02:27:39] 2025-11-27 07:26:46,345 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 02:27:39] 2025-11-27 07:26:47,173 | INFO     | time since job start (36328s) is within the limit (172800.0s)
[2025-11-27 02:27:39] 2025-11-27 07:26:48,849 | INFO     | monitor loop #2153: job 0:6895375900 is in state 'finished'
[2025-11-27 02:27:39] 2025-11-27 07:26:48,850 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 02:27:39] 2025-11-27 07:26:49,181 | INFO     | time since job start (36330s) is within the limit (172800.0s)
[2025-11-27 02:27:39] 2025-11-27 07:26:51,218 | INFO     | time since job start (36332s) is within the limit (172800.0s)
[2025-11-27 02:27:39] 2025-11-27 07:26:51,354 | INFO     | monitor loop #2154: job 0:6895375900 is in state 'finished'
[2025-11-27 02:27:39] 2025-11-27 07:26:51,355 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 02:27:39] 2025-11-27 07:26:51,885 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 02:27:39] 2025-11-27 07:26:51,890 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3719.922539062501
[2025-11-27 02:27:39] 2025-11-27 07:26:51,904 | INFO     | using path: /tmp/boinchome/slots/4/PanDA_Pilot-6895375900/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 02:27:39] 2025-11-27 07:26:51,914 | INFO     | extracted standard info from prmon json
[2025-11-27 02:27:39] 2025-11-27 07:26:51,914 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 02:27:39] 2025-11-27 07:26:51,914 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 02:27:39] 2025-11-27 07:26:51,932 | INFO     | fitting pss+swap vs Time
[2025-11-27 02:27:39] 2025-11-27 07:26:51,946 | INFO     | sum of square deviations: 64666974926.69818
[2025-11-27 02:27:39] 2025-11-27 07:26:51,969 | INFO     | sum of deviations: -575693898061.9142
[2025-11-27 02:27:39] 2025-11-27 07:26:51,971 | INFO     | mean x: 1764210268.8060708
[2025-11-27 02:27:39] 2025-11-27 07:26:51,971 | INFO     | mean y: 3236293.809443508
[2025-11-27 02:27:39] 2025-11-27 07:26:51,971 | INFO     | intersect: 15709013281.229784
[2025-11-27 02:27:39] 2025-11-27 07:26:51,972 | INFO     | chi2: 45.057612180249876
[2025-11-27 02:27:39] 2025-11-27 07:26:51,972 | INFO     | sum of square deviations: 63045809573.65132
[2025-11-27 02:27:39] 2025-11-27 07:26:52,016 | INFO     | sum of deviations: -339588577100.032
[2025-11-27 02:27:39] 2025-11-27 07:26:52,016 | INFO     | mean x: 1764210116.3384354
[2025-11-27 02:27:39] 2025-11-27 07:26:52,016 | INFO     | mean y: 3258493.899659864
[2025-11-27 02:27:39] 2025-11-27 07:26:52,016 | INFO     | intersect: 9505961483.429274
[2025-11-27 02:27:39] 2025-11-27 07:26:52,016 | INFO     | chi2: 40.128371031069406
[2025-11-27 02:27:39] 2025-11-27 07:26:52,016 | INFO     | current chi2=40.128371031069406 (change=10.939863234344022 %)
[2025-11-27 02:27:39] 2025-11-27 07:26:52,016 | INFO     | right removable region: 587
[2025-11-27 02:27:39] 2025-11-27 07:26:52,017 | INFO     | sum of square deviations: 63044432803.651344
[2025-11-27 02:27:39] 2025-11-27 07:26:52,035 | INFO     | sum of deviations: -787443476200.9319
[2025-11-27 02:27:39] 2025-11-27 07:26:52,035 | INFO     | mean x: 1764210421.3384354
[2025-11-27 02:27:39] 2025-11-27 07:26:52,036 | INFO     | mean y: 3256169.4217687077
[2025-11-27 02:27:39] 2025-11-27 07:26:52,036 | INFO     | intersect: 22038762321.968025
[2025-11-27 02:27:39] 2025-11-27 07:26:52,036 | INFO     | chi2: 42.70394327180565
[2025-11-27 02:27:39] 2025-11-27 07:26:52,036 | INFO     | current chi2=42.70394327180565 (change=5.223687618040071 %)
[2025-11-27 02:27:39] 2025-11-27 07:26:52,036 | INFO     | left removable region: 10
[2025-11-27 02:27:39] 2025-11-27 07:26:52,037 | INFO     | sum of square deviations: 59572682952.16996
[2025-11-27 02:27:39] 2025-11-27 07:26:52,055 | INFO     | sum of deviations: -554572802591.3805
[2025-11-27 02:27:39] 2025-11-27 07:26:52,055 | INFO     | mean x: 1764210390.89948
[2025-11-27 02:27:39] 2025-11-27 07:26:52,055 | INFO     | mean y: 3287846.734835355
[2025-11-27 02:27:39] 2025-11-27 07:26:52,055 | INFO     | intersect: 16426639160.75051
[2025-11-27 02:27:39] 2025-11-27 07:26:52,071 | INFO     | chi2: 36.8001810456637
[2025-11-27 02:27:39] 2025-11-27 07:26:52,071 | INFO     | current memory leak: -9.31 B/s (using 577 data points, chi2=36.80)
[2025-11-27 02:27:39] 2025-11-27 07:26:52,072 | INFO     | could have reported an average CPU frequency of 3743 MHz (23 samples)
[2025-11-27 02:27:39] 2025-11-27 07:26:52,072 | INFO     | ..............................
[2025-11-27 02:27:39] 2025-11-27 07:26:52,072 | INFO     | . Timing measurements:
[2025-11-27 02:27:39] 2025-11-27 07:26:52,072 | INFO     | . get job = 0 s
[2025-11-27 02:27:39] 2025-11-27 07:26:52,072 | INFO     | . initial setup = 3 s
[2025-11-27 02:27:39] 2025-11-27 07:26:52,072 | INFO     | . payload setup = 35 s
[2025-11-27 02:27:39] 2025-11-27 07:26:52,072 | INFO     | . stage-in = 0 s
[2025-11-27 02:27:39] 2025-11-27 07:26:52,072 | INFO     | . payload execution = 36170 s
[2025-11-27 02:27:39] 2025-11-27 07:26:52,072 | INFO     | . stage-out = 21 s
[2025-11-27 02:27:39] 2025-11-27 07:26:52,072 | INFO     | . log creation = 2 s
[2025-11-27 02:27:39] 2025-11-27 07:26:52,072 | INFO     | ..............................
[2025-11-27 02:27:39] 2025-11-27 07:26:52,431 | INFO     | 
[2025-11-27 02:27:39] 2025-11-27 07:26:52,431 | INFO     | job summary report
[2025-11-27 02:27:39] 2025-11-27 07:26:52,431 | INFO     | --------------------------------------------------
[2025-11-27 02:27:39] 2025-11-27 07:26:52,431 | INFO     | PanDA job id: 6895375900
[2025-11-27 02:27:39] 2025-11-27 07:26:52,431 | INFO     | task id: 47556137
[2025-11-27 02:27:39] 2025-11-27 07:26:52,433 | INFO     | errors: (none)
[2025-11-27 02:27:39] 2025-11-27 07:26:52,433 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 02:27:39] 2025-11-27 07:26:52,433 | INFO     | pilot state: finished 
[2025-11-27 02:27:39] 2025-11-27 07:26:52,433 | INFO     | transexitcode: 0
[2025-11-27 02:27:39] 2025-11-27 07:26:52,433 | INFO     | exeerrorcode: 0
[2025-11-27 02:27:39] 2025-11-27 07:26:52,433 | INFO     | exeerrordiag: 
[2025-11-27 02:27:39] 2025-11-27 07:26:52,435 | INFO     | exitcode: 0
[2025-11-27 02:27:39] 2025-11-27 07:26:52,435 | INFO     | exitmsg: OK
[2025-11-27 02:27:39] 2025-11-27 07:26:52,435 | INFO     | cpuconsumptiontime: 144374 s
[2025-11-27 02:27:39] 2025-11-27 07:26:52,435 | INFO     | nevents: 1000
[2025-11-27 02:27:39] 2025-11-27 07:26:52,435 | INFO     | neventsw: 0
[2025-11-27 02:27:39] 2025-11-27 07:26:52,435 | INFO     | pid: 3624635
[2025-11-27 02:27:39] 2025-11-27 07:26:52,435 | INFO     | pgrp: 3624635
[2025-11-27 02:27:39] 2025-11-27 07:26:52,437 | INFO     | corecount: 11
[2025-11-27 02:27:39] 2025-11-27 07:26:52,437 | INFO     | event service: False
[2025-11-27 02:27:39] 2025-11-27 07:26:52,437 | INFO     | sizes: {0: 2284137, 1: 2284336, 12: 2284336, 23: 2284364, 26: 2284654, 33: 2284682, 36210: 2324933, 36212: 2324932, 36235: 2333982, 36239: 2334038, 36272: 2334284}
[2025-11-27 02:27:39] 2025-11-27 07:26:52,437 | INFO     | --------------------------------------------------
[2025-11-27 02:27:39] 2025-11-27 07:26:52,437 | INFO     | 
[2025-11-27 02:27:39] 2025-11-27 07:26:52,437 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2025-11-27 02:27:39] 2025-11-27 07:26:52,552 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 02:27:39] 2025-11-27 07:26:52,553 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 02:27:39] 2025-11-27 07:26:52,553 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 02:27:39] 2025-11-27 07:26:52,553 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 02:27:39] 2025-11-27 07:26:52,553 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 02:27:39] 2025-11-27 07:26:52,553 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 02:27:39] 2025-11-27 07:26:52,553 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 02:27:39] 2025-11-27 07:26:52,554 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 02:27:39] 2025-11-27 07:26:52,554 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 02:27:39] 2025-11-27 07:26:52,554 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 02:27:39] 2025-11-27 07:26:52,554 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 02:27:39] 2025-11-27 07:26:52,554 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 02:27:39] 2025-11-27 07:26:52,554 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 02:27:39] 2025-11-27 07:26:52,554 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 02:27:39] 2025-11-27 07:26:52,554 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 02:27:39] 2025-11-27 07:26:52,554 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 02:27:39] 2025-11-27 07:26:52,554 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 02:27:39] 2025-11-27 07:26:52,555 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 02:27:39] 2025-11-27 07:26:52,555 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 02:27:39] 2025-11-27 07:26:52,555 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 02:27:39] 2025-11-27 07:26:52,555 | INFO     | job 6895375900 has completed (purged errors)
[2025-11-27 02:27:39] 2025-11-27 07:26:52,556 | INFO     | overall cleanup function is called
[2025-11-27 02:27:39] 2025-11-27 07:26:53,603 | INFO     | --- collectZombieJob: --- 10, [3624635]
[2025-11-27 02:27:39] 2025-11-27 07:26:53,605 | INFO     | zombie collector waiting for pid 3624635
[2025-11-27 02:27:39] 2025-11-27 07:26:53,605 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 02:27:39] 2025-11-27 07:26:53,605 | INFO     | collected zombie processes
[2025-11-27 02:27:39] 2025-11-27 07:26:53,605 | INFO     | will attempt to kill all subprocesses of pid=3624635
[2025-11-27 02:27:39] 2025-11-27 07:26:54,836 | INFO     | process IDs to be killed: [3624635] (in reverse order)
[2025-11-27 02:27:39] 2025-11-27 07:26:55,273 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 02:27:39] 2025-11-27 07:26:55,273 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 02:27:39] 2025-11-27 07:26:55,311 | INFO     | did not find any defunct processes belonging to 3624635
[2025-11-27 02:27:39] 2025-11-27 07:26:55,337 | INFO     | did not find any defunct processes belonging to 3624635
[2025-11-27 02:27:39] 2025-11-27 07:26:55,339 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 02:27:39] 2025-11-27 07:26:55,341 | INFO     | ready for new job
[2025-11-27 02:27:39] 2025-11-27 07:26:55,341 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 02:27:39] 2025-11-27 07:26:55,343 | INFO     | ***************************************
[2025-11-27 02:27:39] 2025-11-27 07:26:55,344 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 02:27:39] 2025-11-27 07:26:55,344 | INFO     | ***************************************
[2025-11-27 02:27:39] 2025-11-27 07:26:55,344 | INFO     | 
[2025-11-27 02:27:39] 2025-11-27 07:26:55,358 | INFO     | architecture information:
[2025-11-27 02:27:39] 2025-11-27 07:26:55,359 | INFO     | executing command: cat /etc/os-release
[2025-11-27 02:27:39] 2025-11-27 07:26:55,424 | INFO     | cat /etc/os-release:
[2025-11-27 02:27:39] NAME="CentOS Linux"
[2025-11-27 02:27:39] VERSION="7 (Core)"
[2025-11-27 02:27:39] ID="centos"
[2025-11-27 02:27:39] ID_LIKE="rhel fedora"
[2025-11-27 02:27:39] VERSION_ID="7"
[2025-11-27 02:27:39] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 02:27:39] ANSI_COLOR="0;31"
[2025-11-27 02:27:39] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 02:27:39] HOME_URL="https://www.centos.org/"
[2025-11-27 02:27:39] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 02:27:39] 
[2025-11-27 02:27:39] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 02:27:39] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 02:27:39] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 02:27:39] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 02:27:39] 
[2025-11-27 02:27:39] 2025-11-27 07:26:55,424 | INFO     | ***************************************
[2025-11-27 02:27:39] 2025-11-27 07:26:55,929 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2025-11-27 02:27:39] 2025-11-27 07:26:55,999 | INFO     | sufficient remaining disk space (158809980928 B)
[2025-11-27 02:27:39] 2025-11-27 07:26:55,999 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 02:27:39] 2025-11-27 07:26:55,999 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 02:27:39] 2025-11-27 07:26:55,999 | INFO     | update_server=False
[2025-11-27 02:27:39] 2025-11-27 07:26:55,999 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 02:27:39] 2025-11-27 07:26:55,999 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 02:27:39] 2025-11-27 07:26:56,412 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-27 02:27:39] 2025-11-27 07:26:56,413 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-27 02:27:39] 2025-11-27 07:26:56,413 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 02:27:39] 2025-11-27 07:26:56,413 | INFO     | will abort loop
[2025-11-27 02:27:39] 2025-11-27 07:26:56,479 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 02:27:39] 2025-11-27 07:26:56,606 | INFO     | all data control threads have been joined
[2025-11-27 02:27:39] 2025-11-27 07:26:57,020 | INFO     | [job] retrieve thread has finished
[2025-11-27 02:27:39] 2025-11-27 07:26:57,021 | INFO     | all payload control threads have been joined
[2025-11-27 02:27:39] 2025-11-27 07:26:57,365 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 02:27:39] 2025-11-27 07:26:57,420 | INFO     | [job] job monitor thread has finished
[2025-11-27 02:27:39] 2025-11-27 07:26:57,474 | INFO     | [data] copytool_in thread has finished
[2025-11-27 02:27:39] 2025-11-27 07:26:57,474 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 02:27:39] 2025-11-27 07:26:57,474 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 02:27:39] 2025-11-27 07:26:57,479 | INFO     | [job] validate thread has finished
[2025-11-27 02:27:39] 2025-11-27 07:26:57,480 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 02:27:39] 2025-11-27 07:26:57,480 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 02:27:39] 2025-11-27 07:26:57,619 | INFO     | [data] control thread has finished
[2025-11-27 02:27:39] 2025-11-27 07:26:57,726 | INFO     | all job control threads have been joined
[2025-11-27 02:27:39] 2025-11-27 07:26:58,006 | INFO     | [data] copytool_out thread has finished
[2025-11-27 02:27:39] 2025-11-27 07:26:58,027 | INFO     | [payload] control thread has finished
[2025-11-27 02:27:39] 2025-11-27 07:26:58,142 | INFO     | [payload] failed_post thread has finished
[2025-11-27 02:27:39] 2025-11-27 07:26:58,230 | INFO     | [payload] validate_post thread has finished
[2025-11-27 02:27:39] 2025-11-27 07:26:58,371 | INFO     | [job] queue monitor thread has finished
[2025-11-27 02:27:39] 2025-11-27 07:26:58,738 | INFO     | [job] control thread has finished
[2025-11-27 02:27:39] 2025-11-27 07:27:00,495 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 02:27:39] 2025-11-27 07:27:27,649 | INFO     | PID=3603496 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 02:27:39] 2025-11-27 07:27:27,649 | INFO     | .. there are 35 such processes running
[2025-11-27 02:27:39] 2025-11-27 07:27:27,649 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 02:27:39] 2025-11-27 07:27:27,649 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 02:27:39] 2025-11-27 07:27:27,650 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 02:27:39] 2025-11-27 07:27:29,087 | INFO     | [monitor] cgroup control has ended
[2025-11-27 02:27:39] 2025-11-27 07:27:29,822 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139805125900096)>', '<ExcThread(monitor, started 139804767397632)>']
[2025-11-27 02:27:39] 2025-11-27 07:27:30,670 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 02:27:39] 2025-11-27 07:27:30,671 | INFO     | [monitor] control thread has ended
[2025-11-27 02:27:39] 2025-11-27 07:27:34,848 | INFO     | all workflow threads have been joined
[2025-11-27 02:27:39] 2025-11-27 07:27:34,849 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 02:27:39] 2025-11-27 07:27:34,849 | INFO     | traces error code: 0
[2025-11-27 02:27:39] 2025-11-27 07:27:34,849 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 02:27:39] 2025-11-27 07:27:35,877 [wrapper] ==== pilot stdout END ====
[2025-11-27 02:27:39] 2025-11-27 07:27:35,939 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 02:27:39] 2025-11-27 07:27:35,967 [wrapper] pilotpid: 3603496
[2025-11-27 02:27:39] 2025-11-27 07:27:36,005 [wrapper] Pilot exit status: 0
[2025-11-27 02:27:39] 2025-11-27 07:27:36,795 [wrapper] pandaids: 6895375900
[2025-11-27 02:27:39] 2025-11-27 07:27:37,707 [wrapper] cleanup supervisor_pilot 2010728 3603498
[2025-11-27 02:27:39] 2025-11-27 07:27:37,734 [wrapper] Test setup, not cleaning
[2025-11-27 02:27:39] 2025-11-27 07:27:37,864 [wrapper] apfmon messages muted
[2025-11-27 02:27:39] 2025-11-27 07:27:37,905 [wrapper] ==== wrapper stdout END ====
[2025-11-27 02:27:39] 2025-11-27 07:27:37,944 [wrapper] ==== wrapper stderr END ====
[2025-11-27 02:27:39]  *** Error codes and diagnostics ***
[2025-11-27 02:27:39]     "exeErrorCode": 0,
[2025-11-27 02:27:39]     "exeErrorDiag": "",
[2025-11-27 02:27:39]     "pilotErrorCode": 0,
[2025-11-27 02:27:39]     "pilotErrorDiag": "",
[2025-11-27 02:27:39]  *** Listing of results directory ***
[2025-11-27 02:27:39] total 1316096
[2025-11-27 02:27:39] -rw-r--r--. 1 boincer umatlas    576529 Nov 23 19:08 pilot3.tar.gz
[2025-11-27 02:27:39] -rw-r--r--. 1 boincer umatlas      5112 Nov 23 19:17 queuedata.json
[2025-11-27 02:27:39] -rwx------. 1 boincer umatlas     36292 Nov 23 19:17 runpilot2-wrapper.sh
[2025-11-27 02:27:39] -rw-r--r--. 1 boincer umatlas       100 Nov 26 16:20 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 02:27:39] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 16:20 run_atlas
[2025-11-27 02:27:39] -rw-r--r--. 1 boincer umatlas       105 Nov 26 16:20 job.xml
[2025-11-27 02:27:39] -rw-r--r--. 2 boincer umatlas 408209899 Nov 26 16:20 EVNT.47483658._000961.pool.root.1
[2025-11-27 02:27:39] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 16:20 shared
[2025-11-27 02:27:39] -rw-r--r--. 2 boincer umatlas    590107 Nov 26 16:20 input.tar.gz
[2025-11-27 02:27:39] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 16:20 start_atlas.sh
[2025-11-27 02:27:39] -rw-r--r--. 1 boincer umatlas         0 Nov 26 16:20 boinc_lockfile
[2025-11-27 02:27:39] -rw-r--r--. 1 boincer umatlas      2782 Nov 26 16:20 pandaJob.out
[2025-11-27 02:27:39] -rw-------. 1 boincer umatlas        57 Nov 26 16:20 setup.sh.local
[2025-11-27 02:27:39] -rw-------. 1 boincer umatlas    991538 Nov 26 16:21 agis_schedconf.cvmfs.json
[2025-11-27 02:27:39] drwx------. 5 boincer umatlas      4096 Nov 26 16:21 pilot3
[2025-11-27 02:27:39] -rw-r--r--. 1 boincer umatlas       533 Nov 27 01:32 boinc_task_state.xml
[2025-11-27 02:27:39] -rw-r--r--. 1 boincer umatlas      7175 Nov 27 02:22 init_data.xml
[2025-11-27 02:27:39] -rw-------. 1 boincer umatlas 922133303 Nov 27 02:24 HITS.47556137._009471.pool.root.1
[2025-11-27 02:27:39] -rw-------. 1 boincer umatlas      1077 Nov 27 02:25 memory_monitor_summary.json
[2025-11-27 02:27:39] -rw-------. 1 boincer umatlas   1516240 Nov 27 02:26 agis_ddmendpoints.agis.ALL.json
[2025-11-27 02:27:39] -rw-------. 1 boincer umatlas   2156712 Nov 27 02:26 log.47556137._009471.job.log.tgz.1
[2025-11-27 02:27:39] -rw-------. 1 boincer umatlas      7965 Nov 27 02:26 heartbeat.json
[2025-11-27 02:27:39] -rw-------. 1 boincer umatlas        95 Nov 27 02:27 pilot_heartbeat.json
[2025-11-27 02:27:39] -rw-------. 1 boincer umatlas      5011 Nov 27 02:27 pilotlog.txt
[2025-11-27 02:27:39] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 02:27 boinc_mmap_file
[2025-11-27 02:27:39] -rw-r--r--. 1 boincer umatlas        29 Nov 27 02:27 wrapper_checkpoint.txt
[2025-11-27 02:27:39] -rw-------. 1 boincer umatlas   4553567 Nov 27 02:27 log.47556137._009471.job.log.1
[2025-11-27 02:27:39] -rw-------. 1 boincer umatlas       353 Nov 27 02:27 output.list
[2025-11-27 02:27:39] -rw-r--r--. 1 boincer umatlas       620 Nov 27 02:27 runtime_log
[2025-11-27 02:27:39] -rw-------. 1 boincer umatlas   6727680 Nov 27 02:27 result.tar.gz
[2025-11-27 02:27:39] -rw-------. 1 boincer umatlas       666 Nov 27 02:27 rxTNDmCSZh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm9qIKDmxd5Tmm.diag
[2025-11-27 02:27:39] -rw-r--r--. 1 boincer umatlas      9345 Nov 27 02:27 runtime_log.err
[2025-11-27 02:27:39] -rw-r--r--. 1 boincer umatlas     21810 Nov 27 02:27 stderr.txt
[2025-11-27 02:27:39] HITS file was successfully produced:
[2025-11-27 02:27:39] -rw-------. 1 boincer umatlas 922133303 Nov 27 02:24 shared/HITS.pool.root.1
[2025-11-27 02:27:39]  *** Contents of shared directory: ***
[2025-11-27 02:27:39] total 1306344
[2025-11-27 02:27:39] -rw-r--r--. 2 boincer umatlas 408209899 Nov 26 16:20 ATLAS.root_0
[2025-11-27 02:27:39] -rw-r--r--. 2 boincer umatlas    590107 Nov 26 16:20 input.tar.gz
[2025-11-27 02:27:39] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 16:20 start_atlas.sh
[2025-11-27 02:27:39] -rw-------. 1 boincer umatlas 922133303 Nov 27 02:24 HITS.pool.root.1
[2025-11-27 02:27:39] -rw-------. 1 boincer umatlas   6727680 Nov 27 02:27 result.tar.gz
02:27:41 (3594762): run_atlas exited; CPU time 144692.216366
02:27:41 (3594762): called boinc_finish(0)

</stderr_txt>
]]>

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