Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
03:16:47 (23611): wrapper (7.7.26015): starting
03:16:47 (23611): wrapper: running run_atlas (--nthreads 4)
[2025-11-29 03:16:47] Arguments: --nthreads 4
[2025-11-29 03:16:47] Threads: 4
[2025-11-29 03:16:47] Checking for CVMFS
[2025-11-29 03:16:47] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-29 03:16:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-29 03:16:47] Running cvmfs_config stat atlas.cern.ch
[2025-11-29 03:16:47] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-29 03:16:47] 2.9.2.0 3303 7 50180 153425 0 88 28287616 36864000 0 130560 0 59374 99.987 81 5400 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-29 03:16:47] CVMFS is ok
[2025-11-29 03:16:47] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-29 03:16:47] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-29 03:16:47] Further information can be found at the LHC@home message board.
[2025-11-29 03:16:47] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-29 03:16:47] Checking for apptainer binary...
[2025-11-29 03:16:47] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-29 03:16:47] Running /usr/bin/apptainer --version
[2025-11-29 03:16:47] apptainer version 1.4.1-1.1
[2025-11-29 03:16:47] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-29 03:16:47] thA373a
[2025-11-29 03:16:47] apptainer works
[2025-11-29 03:16:47] Set ATHENA_PROC_NUMBER=4
[2025-11-29 03:16:47] Set ATHENA_CORE_NUMBER=4
[2025-11-29 03:16:47] Starting ATLAS job with PandaID=6892522195
[2025-11-29 03:16:47] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-29 10:11:34]  *** The last 200 lines of the pilot log: ***
[2025-11-29 10:11:34] 2025-11-29 09:10:28,343 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-29 10:11:34] 2025-11-29 09:10:28,343 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-29 10:11:34] 2025-11-29 09:10:28,343 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-29 10:11:34] 2025-11-29 09:10:28,343 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-29 10:11:34] 2025-11-29 09:10:28,343 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-29 10:11:34] 2025-11-29 09:10:28,343 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-29 10:11:34] 2025-11-29 09:10:28,343 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-29 10:11:34] 2025-11-29 09:10:28,343 | INFO     | job 6892522195 has completed (purged errors)
[2025-11-29 10:11:34] 2025-11-29 09:10:28,343 | INFO     | overall cleanup function is called
[2025-11-29 10:11:34] 2025-11-29 09:10:29,352 | INFO     | --- collectZombieJob: --- 10, [33988]
[2025-11-29 10:11:34] 2025-11-29 09:10:29,353 | INFO     | zombie collector waiting for pid 33988
[2025-11-29 10:11:34] 2025-11-29 09:10:29,353 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-29 10:11:34] 2025-11-29 09:10:29,353 | INFO     | collected zombie processes
[2025-11-29 10:11:34] 2025-11-29 09:10:29,353 | INFO     | will attempt to kill all subprocesses of pid=33988
[2025-11-29 10:11:34] 2025-11-29 09:10:29,398 | INFO     | process IDs to be killed: [33988] (in reverse order)
[2025-11-29 10:11:34] 2025-11-29 09:10:29,430 | WARNING  | found no corresponding commands to process id(s)
[2025-11-29 10:11:34] 2025-11-29 09:10:29,431 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-29 10:11:34] 2025-11-29 09:10:29,433 | INFO     | did not find any defunct processes belonging to 33988
[2025-11-29 10:11:34] 2025-11-29 09:10:29,434 | INFO     | did not find any defunct processes belonging to 33988
[2025-11-29 10:11:34] 2025-11-29 09:10:29,435 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-29 10:11:34] 2025-11-29 09:10:29,435 | INFO     | ready for new job
[2025-11-29 10:11:34] 2025-11-29 09:10:29,435 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-29 10:11:34] 2025-11-29 09:10:29,436 | INFO     | ***************************************
[2025-11-29 10:11:34] 2025-11-29 09:10:29,436 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-29 10:11:34] 2025-11-29 09:10:29,436 | INFO     | ***************************************
[2025-11-29 10:11:34] 2025-11-29 09:10:29,436 | INFO     | 
[2025-11-29 10:11:34] 2025-11-29 09:10:29,437 | INFO     | architecture information:
[2025-11-29 10:11:34] 2025-11-29 09:10:29,437 | INFO     | executing command: cat /etc/os-release
[2025-11-29 10:11:34] 2025-11-29 09:10:29,451 | INFO     | cat /etc/os-release:
[2025-11-29 10:11:34] NAME="CentOS Linux"
[2025-11-29 10:11:34] VERSION="7 (Core)"
[2025-11-29 10:11:34] ID="centos"
[2025-11-29 10:11:34] ID_LIKE="rhel fedora"
[2025-11-29 10:11:34] VERSION_ID="7"
[2025-11-29 10:11:34] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-29 10:11:34] ANSI_COLOR="0;31"
[2025-11-29 10:11:34] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-29 10:11:34] HOME_URL="https://www.centos.org/"
[2025-11-29 10:11:34] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-29 10:11:34] 
[2025-11-29 10:11:34] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-29 10:11:34] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-29 10:11:34] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-29 10:11:34] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-29 10:11:34] 
[2025-11-29 10:11:34] 2025-11-29 09:10:29,451 | INFO     | ***************************************
[2025-11-29 10:11:34] 2025-11-29 09:10:29,954 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-29 10:11:34] 2025-11-29 09:10:29,972 | INFO     | sufficient remaining disk space (328436023296 B)
[2025-11-29 10:11:34] 2025-11-29 09:10:29,972 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-29 10:11:34] 2025-11-29 09:10:29,972 | INFO     | current server update state: UPDATING_FINAL
[2025-11-29 10:11:34] 2025-11-29 09:10:29,972 | INFO     | update_server=False
[2025-11-29 10:11:34] 2025-11-29 09:10:29,972 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-29 10:11:34] 2025-11-29 09:10:29,972 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-29 10:11:34] 2025-11-29 09:10:29,972 | INFO     | aborting loop
[2025-11-29 10:11:34] 2025-11-29 09:10:30,159 | INFO     | all data control threads have been joined
[2025-11-29 10:11:34] 2025-11-29 09:10:30,167 | INFO     | all job control threads have been joined
[2025-11-29 10:11:34] 2025-11-29 09:10:30,569 | INFO     | all payload control threads have been joined
[2025-11-29 10:11:34] 2025-11-29 09:10:30,978 | INFO     | [job] retrieve thread has finished
[2025-11-29 10:11:34] 2025-11-29 09:10:30,978 | INFO     | [job] job monitor thread has finished
[2025-11-29 10:11:34] 2025-11-29 09:10:31,165 | INFO     | [data] control thread has finished
[2025-11-29 10:11:34] 2025-11-29 09:10:31,173 | INFO     | [job] control thread has finished
[2025-11-29 10:11:34] 2025-11-29 09:10:31,176 | INFO     | [payload] failed_post thread has finished
[2025-11-29 10:11:34] 2025-11-29 09:10:31,339 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-29 10:11:34] 2025-11-29 09:10:31,443 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-29 10:11:34] 2025-11-29 09:10:31,575 | INFO     | [payload] control thread has finished
[2025-11-29 10:11:34] 2025-11-29 09:10:31,666 | INFO     | [data] copytool_in thread has finished
[2025-11-29 10:11:34] 2025-11-29 09:10:31,818 | INFO     | [payload] validate_post thread has finished
[2025-11-29 10:11:34] 2025-11-29 09:10:32,134 | INFO     | [payload] execute_payloads thread has finished
[2025-11-29 10:11:34] 2025-11-29 09:10:32,257 | INFO     | [job] validate thread has finished
[2025-11-29 10:11:34] 2025-11-29 09:10:32,257 | INFO     | [payload] validate_pre thread has finished
[2025-11-29 10:11:34] 2025-11-29 09:10:32,321 | INFO     | [job] create_data_payload thread has finished
[2025-11-29 10:11:34] 2025-11-29 09:10:32,949 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-29 10:11:34] 2025-11-29 09:10:33,346 | INFO     | [data] copytool_out thread has finished
[2025-11-29 10:11:34] 2025-11-29 09:10:33,955 | INFO     | [job] queue monitor thread has finished
[2025-11-29 10:11:34] 2025-11-29 09:10:35,451 | INFO     | [data] queue_monitor thread has finished
[2025-11-29 10:11:34] 2025-11-29 09:10:40,218 | INFO     | job.realtimelogging is not enabled
[2025-11-29 10:11:34] 2025-11-29 09:10:41,224 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-29 10:11:34] 2025-11-29 09:11:00,868 | INFO     | PID=27422 has CPU usage=2.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-29 10:11:34] 2025-11-29 09:11:00,868 | INFO     | found 0 job(s) in 20 queues
[2025-11-29 10:11:34] 2025-11-29 09:11:00,868 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-29 10:11:34] 2025-11-29 09:11:00,869 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-29 10:11:34] 2025-11-29 09:11:28,228 | INFO     | [monitor] cgroup control has ended
[2025-11-29 10:11:34] 2025-11-29 09:11:28,796 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140247451977536)>', '<ExcThread(monitor, started 140246368900864)>']
[2025-11-29 10:11:34] 2025-11-29 09:11:29,018 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-29 10:11:34] 2025-11-29 09:11:29,019 | INFO     | [monitor] control thread has ended
[2025-11-29 10:11:34] 2025-11-29 09:11:33,822 | INFO     | all workflow threads have been joined
[2025-11-29 10:11:34] 2025-11-29 09:11:33,822 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-29 10:11:34] 2025-11-29 09:11:33,823 | INFO     | traces error code: 0
[2025-11-29 10:11:34] 2025-11-29 09:11:33,823 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-29 10:11:34] 2025-11-29 09:11:33,905 [wrapper] ==== pilot stdout END ====
[2025-11-29 10:11:34] 2025-11-29 09:11:33,909 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-29 10:11:34] 2025-11-29 09:11:33,913 [wrapper] pilotpid: 27422
[2025-11-29 10:11:34] 2025-11-29 09:11:33,917 [wrapper] Pilot exit status: 0
[2025-11-29 10:11:34] 2025-11-29 09:11:33,928 [wrapper] pandaids: 6892522195
[2025-11-29 10:11:34] 2025-11-29 09:11:33,952 [wrapper] cleanup supervisor_pilot   80437 27423
[2025-11-29 10:11:34] 2025-11-29 09:11:33,956 [wrapper] Test setup, not cleaning
[2025-11-29 10:11:34] 2025-11-29 09:11:33,960 [wrapper] apfmon messages muted
[2025-11-29 10:11:34] 2025-11-29 09:11:33,964 [wrapper] ==== wrapper stdout END ====
[2025-11-29 10:11:34] 2025-11-29 09:11:33,968 [wrapper] ==== wrapper stderr END ====
[2025-11-29 10:11:34]  *** Error codes and diagnostics ***
[2025-11-29 10:11:34]     "exeErrorCode": 0,
[2025-11-29 10:11:34]     "exeErrorDiag": "",
[2025-11-29 10:11:34]     "pilotErrorCode": 0,
[2025-11-29 10:11:34]     "pilotErrorDiag": "",
[2025-11-29 10:11:34]  *** Listing of results directory ***
[2025-11-29 10:11:34] total 1312248
[2025-11-29 10:11:34] -rw-r--r-- 1 boinc boinc    576529 Nov 19 08:00 pilot3.tar.gz
[2025-11-29 10:11:34] -rwx------ 1 boinc boinc     36292 Nov 19 08:04 runpilot2-wrapper.sh
[2025-11-29 10:11:34] -rw-r--r-- 1 boinc boinc      5112 Nov 19 08:04 queuedata.json
[2025-11-29 10:11:34] -rw-r--r-- 1 boinc boinc       100 Nov 29 03:16 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-29 10:11:34] -rwxr-xr-x 1 boinc boinc      7986 Nov 29 03:16 run_atlas
[2025-11-29 10:11:34] -rw-r--r-- 1 boinc boinc       105 Nov 29 03:16 job.xml
[2025-11-29 10:11:34] -rw-r--r-- 2 boinc boinc 411432514 Nov 29 03:16 EVNT.47493027._000028.pool.root.1
[2025-11-29 10:11:34] -rw-r--r-- 2 boinc boinc    590094 Nov 29 03:16 input.tar.gz
[2025-11-29 10:11:34] -rw-r--r-- 2 boinc boinc     15120 Nov 29 03:16 start_atlas.sh
[2025-11-29 10:11:34] drwxrwx--x 2 boinc boinc      4096 Nov 29 03:16 shared
[2025-11-29 10:11:34] -rw-r--r-- 1 boinc boinc         0 Nov 29 03:16 boinc_setup_complete
[2025-11-29 10:11:34] -rw-r--r-- 1 boinc boinc         0 Nov 29 03:16 boinc_lockfile
[2025-11-29 10:11:34] -rw-r--r-- 1 boinc boinc      2771 Nov 29 03:16 pandaJob.out
[2025-11-29 10:11:34] -rw------- 1 boinc boinc    991834 Nov 29 03:16 agis_schedconf.cvmfs.json
[2025-11-29 10:11:34] drwx------ 5 boinc boinc      4096 Nov 29 03:16 pilot3
[2025-11-29 10:11:34] -rw-r--r-- 1 boinc boinc      6386 Nov 29 04:17 init_data.xml
[2025-11-29 10:11:34] -rw-r--r-- 1 boinc boinc       532 Nov 29 10:06 boinc_task_state.xml
[2025-11-29 10:11:34] -rw------- 1 boinc boinc 918916299 Nov 29 10:09 HITS.47493029._000224.pool.root.1
[2025-11-29 10:11:34] -rw------- 1 boinc boinc        95 Nov 29 10:10 pilot_heartbeat.json
[2025-11-29 10:11:34] -rw------- 1 boinc boinc      1028 Nov 29 10:10 memory_monitor_summary.json
[2025-11-29 10:11:34] -rw------- 1 boinc boinc   1516240 Nov 29 10:10 agis_ddmendpoints.agis.ALL.json
[2025-11-29 10:11:34] -rw------- 1 boinc boinc   1256783 Nov 29 10:10 log.47493029._000224.job.log.tgz.1
[2025-11-29 10:11:34] -rw------- 1 boinc boinc      8572 Nov 29 10:10 heartbeat.json
[2025-11-29 10:11:34] -rw-r--r-- 1 boinc boinc        28 Nov 29 10:11 wrapper_checkpoint.txt
[2025-11-29 10:11:34] -rw-r--r-- 1 boinc boinc      8192 Nov 29 10:11 boinc_mmap_file
[2025-11-29 10:11:34] -rw------- 1 boinc boinc      4822 Nov 29 10:11 pilotlog.txt
[2025-11-29 10:11:34] -rw------- 1 boinc boinc   3489243 Nov 29 10:11 log.47493029._000224.job.log.1
[2025-11-29 10:11:34] -rw------- 1 boinc boinc       353 Nov 29 10:11 output.list
[2025-11-29 10:11:34] -rw-r--r-- 1 boinc boinc       620 Nov 29 10:11 runtime_log
[2025-11-29 10:11:34] -rw------- 1 boinc boinc   4761600 Nov 29 10:11 result.tar.gz
[2025-11-29 10:11:34] -rw------- 1 boinc boinc       666 Nov 29 10:11 zM8KDmMQrf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmkbGKDmAIdkRm.diag
[2025-11-29 10:11:34] -rw-r--r-- 1 boinc boinc      8783 Nov 29 10:11 runtime_log.err
[2025-11-29 10:11:34] -rw-r--r-- 1 boinc boinc     11807 Nov 29 10:11 stderr.txt
[2025-11-29 10:11:34] HITS file was successfully produced:
[2025-11-29 10:11:34] -rw------- 1 boinc boinc 918916299 Nov 29 10:09 shared/HITS.pool.root.1
[2025-11-29 10:11:34]  *** Contents of shared directory: ***
[2025-11-29 10:11:34] total 1304428
[2025-11-29 10:11:34] -rw-r--r-- 2 boinc boinc 411432514 Nov 29 03:16 ATLAS.root_0
[2025-11-29 10:11:34] -rw-r--r-- 2 boinc boinc    590094 Nov 29 03:16 input.tar.gz
[2025-11-29 10:11:34] -rw-r--r-- 2 boinc boinc     15120 Nov 29 03:16 start_atlas.sh
[2025-11-29 10:11:34] -rw------- 1 boinc boinc 918916299 Nov 29 10:09 HITS.pool.root.1
[2025-11-29 10:11:34] -rw------- 1 boinc boinc   4761600 Nov 29 10:11 result.tar.gz
10:11:35 (23611): run_atlas exited; CPU time 97187.042825
10:11:35 (23611): called boinc_finish(0)

</stderr_txt>
]]>

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