Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
14:46:28 (3658013): wrapper (7.7.26015): starting
14:46:28 (3658013): wrapper: running run_atlas (--nthreads 10)
[2025-11-26 14:46:28] Arguments: --nthreads 10
[2025-11-26 14:46:28] Threads: 10
[2025-11-26 14:46:28] Checking for CVMFS
[2025-11-26 14:46:28] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 14:46:29] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 14:46:29] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 14:46:29] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 14:46:29] 2.13.2.0 1657905 30696 161952 153333 1 469 39854851 40960000 31452 16776704 0 378037673 99.697 285906193 47971 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-26 14:46:29] CVMFS is ok
[2025-11-26 14:46:29] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 14:46:29] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 14:46:29] Further information can be found at the LHC@home message board.
[2025-11-26 14:46:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 14:46:29] Checking for apptainer binary...
[2025-11-26 14:46:29] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 14:46:29] Running /usr/bin/apptainer --version
[2025-11-26 14:46:29] apptainer version 1.4.4-1.el9
[2025-11-26 14:46:29] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 14:46:29] c-208-39.aglt2.org
[2025-11-26 14:46:29] apptainer works
[2025-11-26 14:46:29] Set ATHENA_PROC_NUMBER=10
[2025-11-26 14:46:29] Set ATHENA_CORE_NUMBER=10
[2025-11-26 14:46:29] Starting ATLAS job with PandaID=6891571497
[2025-11-26 14:46:29] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 01:52:14]  *** The last 200 lines of the pilot log: ***
[2025-11-27 01:52:14] 2025-11-27 06:51:26,229 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 01:52:14] 2025-11-27 06:51:27,169 | INFO     | time since job start (39885s) is within the limit (172800.0s)
[2025-11-27 01:52:14] 2025-11-27 06:51:28,739 | INFO     | monitor loop #2283: job 0:6891571497 is in state 'finished'
[2025-11-27 01:52:14] 2025-11-27 06:51:28,739 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 01:52:14] 2025-11-27 06:51:29,179 | INFO     | time since job start (39887s) is within the limit (172800.0s)
[2025-11-27 01:52:14] 2025-11-27 06:51:31,205 | INFO     | time since job start (39889s) is within the limit (172800.0s)
[2025-11-27 01:52:14] 2025-11-27 06:51:31,244 | INFO     | monitor loop #2284: job 0:6891571497 is in state 'finished'
[2025-11-27 01:52:14] 2025-11-27 06:51:31,244 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 01:52:14] 2025-11-27 06:51:33,765 | INFO     | monitor loop #2285: job 0:6891571497 is in state 'finished'
[2025-11-27 01:52:14] 2025-11-27 06:51:33,765 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 01:52:14] 2025-11-27 06:51:35,215 | INFO     | PID=3664555 has CPU usage=2.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 01:52:14] 2025-11-27 06:51:35,215 | INFO     | .. there are 51 such processes running
[2025-11-27 01:52:14] 2025-11-27 06:51:35,448 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 01:52:14] 2025-11-27 06:51:35,467 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3773.377812500001
[2025-11-27 01:52:14] 2025-11-27 06:51:35,530 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6891571497/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 01:52:14] 2025-11-27 06:51:35,531 | INFO     | extracted standard info from prmon json
[2025-11-27 01:52:14] 2025-11-27 06:51:35,531 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 01:52:14] 2025-11-27 06:51:35,531 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 01:52:14] 2025-11-27 06:51:35,566 | INFO     | fitting pss+swap vs Time
[2025-11-27 01:52:14] 2025-11-27 06:51:35,567 | INFO     | sum of square deviations: 86340654263.88678
[2025-11-27 01:52:14] 2025-11-27 06:51:35,581 | INFO     | sum of deviations: -154677452317.26227
[2025-11-27 01:52:14] 2025-11-27 06:51:35,581 | INFO     | mean x: 1764206322.1470137
[2025-11-27 01:52:14] 2025-11-27 06:51:35,581 | INFO     | mean y: 3248732.096477795
[2025-11-27 01:52:14] 2025-11-27 06:51:35,581 | INFO     | intersect: 3163786969.8272586
[2025-11-27 01:52:14] 2025-11-27 06:51:35,582 | INFO     | chi2: 21.980101200150063
[2025-11-27 01:52:14] 2025-11-27 06:51:35,582 | INFO     | sum of square deviations: 84372696962.25784
[2025-11-27 01:52:14] 2025-11-27 06:51:35,591 | INFO     | sum of deviations: 104621555150.4577
[2025-11-27 01:52:14] 2025-11-27 06:51:35,591 | INFO     | mean x: 1764206169.6558642
[2025-11-27 01:52:14] 2025-11-27 06:51:35,591 | INFO     | mean y: 3268819.2083333335
[2025-11-27 01:52:14] 2025-11-27 06:51:35,591 | INFO     | intersect: -2184334513.632782
[2025-11-27 01:52:14] 2025-11-27 06:51:35,596 | INFO     | chi2: 17.97524071978568
[2025-11-27 01:52:14] 2025-11-27 06:51:35,596 | INFO     | current chi2=17.97524071978568 (change=18.220391452688308 %)
[2025-11-27 01:52:14] 2025-11-27 06:51:35,596 | INFO     | right removable region: 647
[2025-11-27 01:52:14] 2025-11-27 06:51:35,596 | INFO     | sum of square deviations: 84372279784.56812
[2025-11-27 01:52:14] 2025-11-27 06:51:35,606 | INFO     | sum of deviations: -304253083573.1856
[2025-11-27 01:52:14] 2025-11-27 06:51:35,606 | INFO     | mean x: 1764206474.654321
[2025-11-27 01:52:14] 2025-11-27 06:51:35,606 | INFO     | mean y: 3260287.8518518517
[2025-11-27 01:52:14] 2025-11-27 06:51:35,606 | INFO     | intersect: 6365127732.27679
[2025-11-27 01:52:14] 2025-11-27 06:51:35,606 | INFO     | chi2: 20.52486202813473
[2025-11-27 01:52:14] 2025-11-27 06:51:35,606 | INFO     | current chi2=20.52486202813473 (change=6.620711882825167 %)
[2025-11-27 01:52:14] 2025-11-27 06:51:35,606 | INFO     | left removable region: 10
[2025-11-27 01:52:14] 2025-11-27 06:51:35,607 | INFO     | sum of square deviations: 80148121637.00462
[2025-11-27 01:52:14] 2025-11-27 06:51:35,620 | INFO     | sum of deviations: -37692426521.4518
[2025-11-27 01:52:14] 2025-11-27 06:51:35,620 | INFO     | mean x: 1764206444.1726844
[2025-11-27 01:52:14] 2025-11-27 06:51:35,620 | INFO     | mean y: 3287835.4222919936
[2025-11-27 01:52:14] 2025-11-27 06:51:35,620 | INFO     | intersect: 832966939.6540835
[2025-11-27 01:52:14] 2025-11-27 06:51:35,621 | INFO     | chi2: 15.745533388308397
[2025-11-27 01:52:14] 2025-11-27 06:51:35,621 | INFO     | current memory leak: -0.47 B/s (using 637 data points, chi2=15.75)
[2025-11-27 01:52:14] 2025-11-27 06:51:35,621 | INFO     | could have reported an average CPU frequency of 3747 MHz (25 samples)
[2025-11-27 01:52:14] 2025-11-27 06:51:35,621 | INFO     | ..............................
[2025-11-27 01:52:14] 2025-11-27 06:51:35,621 | INFO     | . Timing measurements:
[2025-11-27 01:52:14] 2025-11-27 06:51:35,621 | INFO     | . get job = 0 s
[2025-11-27 01:52:14] 2025-11-27 06:51:35,621 | INFO     | . initial setup = 2 s
[2025-11-27 01:52:14] 2025-11-27 06:51:35,621 | INFO     | . payload setup = 8 s
[2025-11-27 01:52:14] 2025-11-27 06:51:35,622 | INFO     | . stage-in = 0 s
[2025-11-27 01:52:14] 2025-11-27 06:51:35,622 | INFO     | . payload execution = 39824 s
[2025-11-27 01:52:14] 2025-11-27 06:51:35,622 | INFO     | . stage-out = 5 s
[2025-11-27 01:52:14] 2025-11-27 06:51:35,622 | INFO     | . log creation = 1 s
[2025-11-27 01:52:14] 2025-11-27 06:51:35,622 | INFO     | ..............................
[2025-11-27 01:52:14] 2025-11-27 06:51:36,080 | INFO     | 
[2025-11-27 01:52:14] 2025-11-27 06:51:36,080 | INFO     | job summary report
[2025-11-27 01:52:14] 2025-11-27 06:51:36,080 | INFO     | --------------------------------------------------
[2025-11-27 01:52:14] 2025-11-27 06:51:36,080 | INFO     | PanDA job id: 6891571497
[2025-11-27 01:52:14] 2025-11-27 06:51:36,080 | INFO     | task id: 47493068
[2025-11-27 01:52:14] 2025-11-27 06:51:36,080 | INFO     | errors: (none)
[2025-11-27 01:52:14] 2025-11-27 06:51:36,080 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 01:52:14] 2025-11-27 06:51:36,080 | INFO     | pilot state: finished 
[2025-11-27 01:52:14] 2025-11-27 06:51:36,080 | INFO     | transexitcode: 0
[2025-11-27 01:52:14] 2025-11-27 06:51:36,080 | INFO     | exeerrorcode: 0
[2025-11-27 01:52:14] 2025-11-27 06:51:36,080 | INFO     | exeerrordiag: 
[2025-11-27 01:52:14] 2025-11-27 06:51:36,080 | INFO     | exitcode: 0
[2025-11-27 01:52:14] 2025-11-27 06:51:36,080 | INFO     | exitmsg: OK
[2025-11-27 01:52:14] 2025-11-27 06:51:36,080 | INFO     | cpuconsumptiontime: 143824 s
[2025-11-27 01:52:14] 2025-11-27 06:51:36,080 | INFO     | nevents: 1000
[2025-11-27 01:52:14] 2025-11-27 06:51:36,080 | INFO     | neventsw: 0
[2025-11-27 01:52:14] 2025-11-27 06:51:36,080 | INFO     | pid: 3677828
[2025-11-27 01:52:14] 2025-11-27 06:51:36,080 | INFO     | pgrp: 3677828
[2025-11-27 01:52:14] 2025-11-27 06:51:36,080 | INFO     | corecount: 10
[2025-11-27 01:52:14] 2025-11-27 06:51:36,081 | INFO     | event service: False
[2025-11-27 01:52:14] 2025-11-27 06:51:36,081 | INFO     | sizes: {0: 2283476, 1: 2284332, 8: 2284594, 11: 2284622, 39834: 2327788, 39841: 2336966, 39877: 2337220}
[2025-11-27 01:52:14] 2025-11-27 06:51:36,081 | INFO     | --------------------------------------------------
[2025-11-27 01:52:14] 2025-11-27 06:51:36,081 | INFO     | 
[2025-11-27 01:52:14] 2025-11-27 06:51:36,081 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-27 01:52:14] 2025-11-27 06:51:36,219 | INFO     | time since job start (39894s) is within the limit (172800.0s)
[2025-11-27 01:52:14] 2025-11-27 06:51:36,232 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 01:52:14] 2025-11-27 06:51:36,232 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 01:52:14] 2025-11-27 06:51:36,232 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 01:52:14] 2025-11-27 06:51:36,232 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 01:52:14] 2025-11-27 06:51:36,232 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 01:52:14] 2025-11-27 06:51:36,232 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 01:52:14] 2025-11-27 06:51:36,232 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 01:52:14] 2025-11-27 06:51:36,233 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 01:52:14] 2025-11-27 06:51:36,233 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 01:52:14] 2025-11-27 06:51:36,233 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 01:52:14] 2025-11-27 06:51:36,233 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 01:52:14] 2025-11-27 06:51:36,233 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 01:52:14] 2025-11-27 06:51:36,233 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 01:52:14] 2025-11-27 06:51:36,233 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 01:52:14] 2025-11-27 06:51:36,233 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 01:52:14] 2025-11-27 06:51:36,233 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 01:52:14] 2025-11-27 06:51:36,233 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 01:52:14] 2025-11-27 06:51:36,233 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 01:52:14] 2025-11-27 06:51:36,233 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 01:52:14] 2025-11-27 06:51:36,233 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 01:52:14] 2025-11-27 06:51:36,233 | INFO     | job 6891571497 has completed (purged errors)
[2025-11-27 01:52:14] 2025-11-27 06:51:36,233 | INFO     | overall cleanup function is called
[2025-11-27 01:52:14] 2025-11-27 06:51:37,371 | INFO     | --- collectZombieJob: --- 10, [3677828]
[2025-11-27 01:52:14] 2025-11-27 06:51:37,371 | INFO     | zombie collector waiting for pid 3677828
[2025-11-27 01:52:14] 2025-11-27 06:51:37,371 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 01:52:14] 2025-11-27 06:51:37,371 | INFO     | collected zombie processes
[2025-11-27 01:52:14] 2025-11-27 06:51:37,371 | INFO     | will attempt to kill all subprocesses of pid=3677828
[2025-11-27 01:52:14] 2025-11-27 06:51:39,529 | INFO     | process IDs to be killed: [3677828] (in reverse order)
[2025-11-27 01:52:14] 2025-11-27 06:51:40,057 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 01:52:14] 2025-11-27 06:51:40,057 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 01:52:14] 2025-11-27 06:51:40,137 | INFO     | did not find any defunct processes belonging to 3677828
[2025-11-27 01:52:14] 2025-11-27 06:51:40,189 | INFO     | did not find any defunct processes belonging to 3677828
[2025-11-27 01:52:14] 2025-11-27 06:51:40,190 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 01:52:14] 2025-11-27 06:51:40,190 | INFO     | ready for new job
[2025-11-27 01:52:14] 2025-11-27 06:51:40,190 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 01:52:14] 2025-11-27 06:51:40,195 | INFO     | ***************************************
[2025-11-27 01:52:14] 2025-11-27 06:51:40,195 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 01:52:14] 2025-11-27 06:51:40,195 | INFO     | ***************************************
[2025-11-27 01:52:14] 2025-11-27 06:51:40,195 | INFO     | 
[2025-11-27 01:52:14] 2025-11-27 06:51:40,206 | INFO     | architecture information:
[2025-11-27 01:52:14] 2025-11-27 06:51:40,210 | INFO     | executing command: cat /etc/os-release
[2025-11-27 01:52:14] 2025-11-27 06:51:40,269 | INFO     | cat /etc/os-release:
[2025-11-27 01:52:14] NAME="CentOS Linux"
[2025-11-27 01:52:14] VERSION="7 (Core)"
[2025-11-27 01:52:14] ID="centos"
[2025-11-27 01:52:14] ID_LIKE="rhel fedora"
[2025-11-27 01:52:14] VERSION_ID="7"
[2025-11-27 01:52:14] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 01:52:14] ANSI_COLOR="0;31"
[2025-11-27 01:52:14] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 01:52:14] HOME_URL="https://www.centos.org/"
[2025-11-27 01:52:14] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 01:52:14] 
[2025-11-27 01:52:14] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 01:52:14] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 01:52:14] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 01:52:14] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 01:52:14] 
[2025-11-27 01:52:14] 2025-11-27 06:51:40,269 | INFO     | ***************************************
[2025-11-27 01:52:14] 2025-11-27 06:51:40,773 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-27 01:52:14] 2025-11-27 06:51:40,873 | INFO     | sufficient remaining disk space (155964145664 B)
[2025-11-27 01:52:14] 2025-11-27 06:51:40,873 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 01:52:14] 2025-11-27 06:51:40,873 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 01:52:14] 2025-11-27 06:51:40,873 | INFO     | update_server=False
[2025-11-27 01:52:14] 2025-11-27 06:51:40,873 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 01:52:14] 2025-11-27 06:51:40,874 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 01:52:14] 2025-11-27 06:51:40,875 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 01:52:14] 2025-11-27 06:51:41,309 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-27 01:52:14] 2025-11-27 06:51:41,309 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-27 01:52:14] 2025-11-27 06:51:41,309 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 01:52:14] 2025-11-27 06:51:41,309 | INFO     | will abort loop
[2025-11-27 01:52:14] 2025-11-27 06:51:41,424 | INFO     | all payload control threads have been joined
[2025-11-27 01:52:14] 2025-11-27 06:51:41,500 | INFO     | all data control threads have been joined
[2025-11-27 01:52:14] 2025-11-27 06:51:41,882 | INFO     | [job] retrieve thread has finished
[2025-11-27 01:52:14] 2025-11-27 06:51:41,882 | INFO     | [job] queue monitor thread has finished
[2025-11-27 01:52:14] 2025-11-27 06:51:42,070 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 01:52:14] 2025-11-27 06:51:42,122 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 01:52:14] 2025-11-27 06:51:42,314 | INFO     | [job] job monitor thread has finished
[2025-11-27 01:52:14] 2025-11-27 06:51:42,320 | INFO     | all job control threads have been joined
[2025-11-27 01:52:14] 2025-11-27 06:51:42,440 | INFO     | [payload] control thread has finished
[2025-11-27 01:52:14] 2025-11-27 06:51:42,506 | INFO     | [data] control thread has finished
[2025-11-27 01:52:14] 2025-11-27 06:51:42,571 | INFO     | [payload] failed_post thread has finished
[2025-11-27 01:52:14] 2025-11-27 06:51:42,788 | INFO     | [payload] validate_post thread has finished
[2025-11-27 01:52:14] 2025-11-27 06:51:42,854 | INFO     | [data] copytool_in thread has finished
[2025-11-27 01:52:14] 2025-11-27 06:51:42,883 | INFO     | [data] copytool_out thread has finished
[2025-11-27 01:52:14] 2025-11-27 06:51:42,899 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 01:52:14] 2025-11-27 06:51:43,226 | INFO     | [job] validate thread has finished
[2025-11-27 01:52:14] 2025-11-27 06:51:43,345 | INFO     | [job] control thread has finished
[2025-11-27 01:52:14] 2025-11-27 06:51:43,375 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 01:52:14] 2025-11-27 06:51:46,081 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 01:52:14] 2025-11-27 06:51:51,394 | INFO     | job.realtimelogging is not enabled
[2025-11-27 01:52:14] 2025-11-27 06:51:52,403 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 01:52:14] 2025-11-27 06:51:54,021 | INFO     | [monitor] cgroup control has ended
[2025-11-27 01:52:14] 2025-11-27 06:51:55,684 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139905948632896)>', '<ExcThread(monitor, started 139905455871744)>']
[2025-11-27 01:52:14] 2025-11-27 06:52:00,710 | INFO     | all workflow threads have been joined
[2025-11-27 01:52:14] 2025-11-27 06:52:00,710 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 01:52:14] 2025-11-27 06:52:00,710 | INFO     | traces error code: 0
[2025-11-27 01:52:14] 2025-11-27 06:52:00,710 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 01:52:14] 2025-11-27 06:52:11,857 | INFO     | PID=3664555 has CPU usage=3.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 01:52:14] 2025-11-27 06:52:11,881 | INFO     | .. there are 51 such processes running
[2025-11-27 01:52:14] 2025-11-27 06:52:11,881 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 01:52:14] 2025-11-27 06:52:11,882 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 01:52:14] 2025-11-27 06:52:11,882 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 01:52:14] 2025-11-27 06:52:11,882 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 01:52:14] 2025-11-27 06:52:11,882 | CRITICAL | thread 'MainThread' is not alive
[2025-11-27 01:52:14] 2025-11-27 06:52:11,882 | INFO     | [monitor] control thread has ended
[2025-11-27 01:52:14] 2025-11-27 06:52:12,406 [wrapper] ==== pilot stdout END ====
[2025-11-27 01:52:14] 2025-11-27 06:52:12,469 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 01:52:14] 2025-11-27 06:52:12,495 [wrapper] pilotpid: 3664555
[2025-11-27 01:52:14] 2025-11-27 06:52:12,517 [wrapper] Pilot exit status: 0
[2025-11-27 01:52:14] 2025-11-27 06:52:12,659 [wrapper] pandaids: 6891571497
[2025-11-27 01:52:14] 2025-11-27 06:52:13,439 [wrapper] cleanup supervisor_pilot   21102 3664556
[2025-11-27 01:52:14] 2025-11-27 06:52:13,480 [wrapper] Test setup, not cleaning
[2025-11-27 01:52:14] 2025-11-27 06:52:13,502 [wrapper] apfmon messages muted
[2025-11-27 01:52:14] 2025-11-27 06:52:13,579 [wrapper] ==== wrapper stdout END ====
[2025-11-27 01:52:14] 2025-11-27 06:52:13,608 [wrapper] ==== wrapper stderr END ====
[2025-11-27 01:52:14]  *** Error codes and diagnostics ***
[2025-11-27 01:52:14]     "exeErrorCode": 0,
[2025-11-27 01:52:14]     "exeErrorDiag": "",
[2025-11-27 01:52:14]     "pilotErrorCode": 0,
[2025-11-27 01:52:14]     "pilotErrorDiag": "",
[2025-11-27 01:52:14]  *** Listing of results directory ***
[2025-11-27 01:52:14] total 1339184
[2025-11-27 01:52:14] -rw-r--r--. 1 boincer umatlas    576529 Nov 18 10:47 pilot3.tar.gz
[2025-11-27 01:52:14] -rw-r--r--. 1 boincer umatlas      5112 Nov 18 10:50 queuedata.json
[2025-11-27 01:52:14] -rwx------. 1 boincer umatlas     36292 Nov 18 10:51 runpilot2-wrapper.sh
[2025-11-27 01:52:14] -rw-r--r--. 1 boincer umatlas       100 Nov 26 14:46 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 01:52:14] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 14:46 run_atlas
[2025-11-27 01:52:14] -rw-r--r--. 1 boincer umatlas       105 Nov 26 14:46 job.xml
[2025-11-27 01:52:14] -rw-r--r--. 2 boincer umatlas 412266837 Nov 26 14:46 EVNT.47493065._000283.pool.root.1
[2025-11-27 01:52:14] -rw-r--r--. 2 boincer umatlas     15120 Nov 26 14:46 start_atlas.sh
[2025-11-27 01:52:14] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 14:46 shared
[2025-11-27 01:52:14] -rw-r--r--. 2 boincer umatlas    590100 Nov 26 14:46 input.tar.gz
[2025-11-27 01:52:14] -rw-r--r--. 1 boincer umatlas         0 Nov 26 14:46 boinc_lockfile
[2025-11-27 01:52:14] -rw-r--r--. 1 boincer umatlas      2773 Nov 26 14:46 pandaJob.out
[2025-11-27 01:52:14] -rw-------. 1 boincer umatlas    991522 Nov 26 14:46 agis_schedconf.cvmfs.json
[2025-11-27 01:52:14] drwx------. 5 boincer umatlas      4096 Nov 26 14:46 pilot3
[2025-11-27 01:52:14] -rw-r--r--. 1 boincer umatlas       533 Nov 27 01:16 boinc_task_state.xml
[2025-11-27 01:52:14] -rw-r--r--. 1 boincer umatlas      7175 Nov 27 01:47 init_data.xml
[2025-11-27 01:52:14] -rw-------. 1 boincer umatlas 941146327 Nov 27 01:49 HITS.47493068._002827.pool.root.1
[2025-11-27 01:52:14] -rw-------. 1 boincer umatlas      1077 Nov 27 01:50 memory_monitor_summary.json
[2025-11-27 01:52:14] -rw-------. 1 boincer umatlas   1516240 Nov 27 01:50 agis_ddmendpoints.agis.ALL.json
[2025-11-27 01:52:14] -rw-------. 1 boincer umatlas   2082744 Nov 27 01:50 log.47493068._002827.job.log.tgz.1
[2025-11-27 01:52:14] -rw-------. 1 boincer umatlas      8655 Nov 27 01:51 heartbeat.json
[2025-11-27 01:52:14] -rw-r--r--. 1 boincer umatlas        29 Nov 27 01:52 wrapper_checkpoint.txt
[2025-11-27 01:52:14] -rw-------. 1 boincer umatlas        95 Nov 27 01:52 pilot_heartbeat.json
[2025-11-27 01:52:14] -rw-------. 1 boincer umatlas       893 Nov 27 01:52 pilotlog.txt
[2025-11-27 01:52:14] -rw-------. 1 boincer umatlas   4911163 Nov 27 01:52 log.47493068._002827.job.log.1
[2025-11-27 01:52:14] -rw-------. 1 boincer umatlas       353 Nov 27 01:52 output.list
[2025-11-27 01:52:14] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 01:52 boinc_mmap_file
[2025-11-27 01:52:14] -rw-r--r--. 1 boincer umatlas       620 Nov 27 01:52 runtime_log
[2025-11-27 01:52:14] -rw-------. 1 boincer umatlas   7014400 Nov 27 01:52 result.tar.gz
[2025-11-27 01:52:14] -rw-------. 1 boincer umatlas       666 Nov 27 01:52 WwSKDmcAdf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmAhFKDmr1gFMo.diag
[2025-11-27 01:52:14] -rw-r--r--. 1 boincer umatlas      8706 Nov 27 01:52 runtime_log.err
[2025-11-27 01:52:14] -rw-r--r--. 1 boincer umatlas     21759 Nov 27 01:52 stderr.txt
[2025-11-27 01:52:14] HITS file was successfully produced:
[2025-11-27 01:52:14] -rw-------. 1 boincer umatlas 941146327 Nov 27 01:49 shared/HITS.pool.root.1
[2025-11-27 01:52:14]  *** Contents of shared directory: ***
[2025-11-27 01:52:14] total 1329156
[2025-11-27 01:52:14] -rw-r--r--. 2 boincer umatlas 412266837 Nov 26 14:46 ATLAS.root_0
[2025-11-27 01:52:14] -rw-r--r--. 2 boincer umatlas     15120 Nov 26 14:46 start_atlas.sh
[2025-11-27 01:52:14] -rw-r--r--. 2 boincer umatlas    590100 Nov 26 14:46 input.tar.gz
[2025-11-27 01:52:14] -rw-------. 1 boincer umatlas 941146327 Nov 27 01:49 HITS.pool.root.1
[2025-11-27 01:52:14] -rw-------. 1 boincer umatlas   7014400 Nov 27 01:52 result.tar.gz
01:52:16 (3658013): run_atlas exited; CPU time 144186.727943
01:52:16 (3658013): called boinc_finish(0)

</stderr_txt>
]]>

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