Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
13:04:37 (28826): wrapper (7.7.26015): starting
13:04:37 (28826): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 13:04:37] Arguments: --nthreads 8
[2025-11-26 13:04:37] Threads: 8
[2025-11-26 13:04:37] Checking for CVMFS
[2025-11-26 13:04:37] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 13:04:37] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 13:04:37] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 13:04:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 13:04:38] 2.11.2.0 2783 82306 81172 153330 3 82 18574256 20275201 1 130560 0 26943067 99.898 4459467 30123 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-26 13:04:38] CVMFS is ok
[2025-11-26 13:04:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 13:04:38] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 13:04:38] Further information can be found at the LHC@home message board.
[2025-11-26 13:04:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 13:04:38] Checking for apptainer binary...
[2025-11-26 13:04:38] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 13:04:38] Running /usr/bin/apptainer --version
[2025-11-26 13:04:38] apptainer version 1.3.2-1.el7
[2025-11-26 13:04:38] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 13:04:40] c-204-38.aglt2.org
[2025-11-26 13:04:40] apptainer works
[2025-11-26 13:04:40] Set ATHENA_PROC_NUMBER=8
[2025-11-26 13:04:40] Set ATHENA_CORE_NUMBER=8
[2025-11-26 13:04:40] Starting ATLAS job with PandaID=6897487108
[2025-11-26 13:04:40] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 01:49:19]  *** The last 200 lines of the pilot log: ***
[2025-11-27 01:49:19] 2025-11-27 06:48:11,710 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 01:49:19] 2025-11-27 06:48:12,465 | INFO     | time since job start (45794s) is within the limit (172800.0s)
[2025-11-27 01:49:19] 2025-11-27 06:48:12,465 | INFO     | 45797s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-27 01:49:19] 2025-11-27 06:48:13,599 | INFO     | PID=32527 has CPU usage=13.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-27 01:49:19] 2025-11-27 06:48:14,047 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-27 01:49:19] 2025-11-27 06:48:14,050 | INFO     | found 8 cores (4 cores per socket, 2 sockets) , CPU MHz: 1712.5
[2025-11-27 01:49:19] 2025-11-27 06:48:14,053 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6897487108/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 01:49:19] 2025-11-27 06:48:14,054 | INFO     | extracted standard info from prmon json
[2025-11-27 01:49:19] 2025-11-27 06:48:14,054 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 01:49:19] 2025-11-27 06:48:14,054 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 01:49:19] 2025-11-27 06:48:14,066 | INFO     | fitting pss+swap vs Time
[2025-11-27 01:49:19] 2025-11-27 06:48:14,067 | INFO     | sum of square deviations: 130816005879.3665
[2025-11-27 01:49:19] 2025-11-27 06:48:14,079 | INFO     | sum of deviations: 945706976812.686
[2025-11-27 01:49:19] 2025-11-27 06:48:14,079 | INFO     | mean x: 1764203175.0466666
[2025-11-27 01:49:19] 2025-11-27 06:48:14,079 | INFO     | mean y: 2868155.8946666666
[2025-11-27 01:49:19] 2025-11-27 06:48:14,079 | INFO     | intersect: -12751070018.118055
[2025-11-27 01:49:19] 2025-11-27 06:48:14,080 | INFO     | chi2: 5.362704818577125
[2025-11-27 01:49:19] 2025-11-27 06:48:14,081 | INFO     | sum of square deviations: 128217207780.36244
[2025-11-27 01:49:19] 2025-11-27 06:48:14,093 | INFO     | sum of deviations: 1177824087329.0737
[2025-11-27 01:49:19] 2025-11-27 06:48:14,093 | INFO     | mean x: 1764203022.5503356
[2025-11-27 01:49:19] 2025-11-27 06:48:14,093 | INFO     | mean y: 2881771.904697987
[2025-11-27 01:49:19] 2025-11-27 06:48:14,093 | INFO     | intersect: -16203373619.790033
[2025-11-27 01:49:19] 2025-11-27 06:48:14,094 | INFO     | chi2: 2.5480993414689537
[2025-11-27 01:49:19] 2025-11-27 06:48:14,094 | INFO     | current chi2=2.5480993414689537 (change=52.484810787235624 %)
[2025-11-27 01:49:19] 2025-11-27 06:48:14,095 | INFO     | sum of square deviations: 125653061493.8378
[2025-11-27 01:49:19] 2025-11-27 06:48:14,106 | INFO     | sum of deviations: 1223653430903.298
[2025-11-27 01:49:19] 2025-11-27 06:48:14,106 | INFO     | mean x: 1764202870.054054
[2025-11-27 01:49:19] 2025-11-27 06:48:14,106 | INFO     | mean y: 2884490.9675675677
[2025-11-27 01:49:19] 2025-11-27 06:48:14,106 | INFO     | intersect: -17177539679.254166
[2025-11-27 01:49:19] 2025-11-27 06:48:14,107 | INFO     | chi2: 2.3198210956415513
[2025-11-27 01:49:19] 2025-11-27 06:48:14,107 | INFO     | current chi2=2.3198210956415513 (change=8.958765543881908 %)
[2025-11-27 01:49:19] 2025-11-27 06:48:14,108 | INFO     | right removable region: 739
[2025-11-27 01:49:19] 2025-11-27 06:48:14,108 | INFO     | sum of square deviations: 128216957680.36243
[2025-11-27 01:49:19] 2025-11-27 06:48:14,120 | INFO     | sum of deviations: 746813312009.8453
[2025-11-27 01:49:19] 2025-11-27 06:48:14,120 | INFO     | mean x: 1764203327.5503356
[2025-11-27 01:49:19] 2025-11-27 06:48:14,120 | INFO     | mean y: 2879807.4174496643
[2025-11-27 01:49:19] 2025-11-27 06:48:14,120 | INFO     | intersect: -10272910181.229643
[2025-11-27 01:49:19] 2025-11-27 06:48:14,121 | INFO     | chi2: 3.270141847411386
[2025-11-27 01:49:19] 2025-11-27 06:48:14,121 | INFO     | current chi2=3.270141847411386 (change=39.02066292958772 %)
[2025-11-27 01:49:19] 2025-11-27 06:48:14,122 | INFO     | sum of square deviations: 125652561293.83778
[2025-11-27 01:49:19] 2025-11-27 06:48:14,133 | INFO     | sum of deviations: 701644803089.5406
[2025-11-27 01:49:19] 2025-11-27 06:48:14,134 | INFO     | mean x: 1764203480.054054
[2025-11-27 01:49:19] 2025-11-27 06:48:14,134 | INFO     | mean y: 2882492.4364864863
[2025-11-27 01:49:19] 2025-11-27 06:48:14,134 | INFO     | intersect: -9848442388.062508
[2025-11-27 01:49:19] 2025-11-27 06:48:14,135 | INFO     | chi2: 3.228861732338682
[2025-11-27 01:49:19] 2025-11-27 06:48:14,135 | INFO     | current chi2=3.228861732338682 (change=1.2623340820943652 %)
[2025-11-27 01:49:19] 2025-11-27 06:48:14,135 | INFO     | left removable region: 20
[2025-11-27 01:49:19] 2025-11-27 06:48:14,136 | INFO     | sum of square deviations: 115255974010.99556
[2025-11-27 01:49:19] 2025-11-27 06:48:14,146 | INFO     | sum of deviations: 895071692974.1328
[2025-11-27 01:49:19] 2025-11-27 06:48:14,146 | INFO     | mean x: 1764203449.5618916
[2025-11-27 01:49:19] 2025-11-27 06:48:14,147 | INFO     | mean y: 2904169.019471488
[2025-11-27 01:49:19] 2025-11-27 06:48:14,147 | INFO     | intersect: -13697804899.644686
[2025-11-27 01:49:19] 2025-11-27 06:48:14,147 | INFO     | chi2: 0.11885316609902748
[2025-11-27 01:49:19] 2025-11-27 06:48:14,148 | INFO     | current memory leak: 7.77 B/s (using 719 data points, chi2=0.12)
[2025-11-27 01:49:19] 2025-11-27 06:48:14,148 | INFO     | could have reported an average CPU frequency of 2153 MHz (29 samples)
[2025-11-27 01:49:19] 2025-11-27 06:48:14,148 | INFO     | ..............................
[2025-11-27 01:49:19] 2025-11-27 06:48:14,149 | INFO     | . Timing measurements:
[2025-11-27 01:49:19] 2025-11-27 06:48:14,149 | INFO     | . get job = 0 s
[2025-11-27 01:49:19] 2025-11-27 06:48:14,149 | INFO     | . initial setup = 2 s
[2025-11-27 01:49:19] 2025-11-27 06:48:14,149 | INFO     | . payload setup = 9 s
[2025-11-27 01:49:19] 2025-11-27 06:48:14,149 | INFO     | . stage-in = 0 s
[2025-11-27 01:49:19] 2025-11-27 06:48:14,149 | INFO     | . payload execution = 45751 s
[2025-11-27 01:49:19] 2025-11-27 06:48:14,149 | INFO     | . stage-out = 3 s
[2025-11-27 01:49:19] 2025-11-27 06:48:14,149 | INFO     | . log creation = 0 s
[2025-11-27 01:49:19] 2025-11-27 06:48:14,149 | INFO     | ..............................
[2025-11-27 01:49:19] 2025-11-27 06:48:14,240 | INFO     | 
[2025-11-27 01:49:19] 2025-11-27 06:48:14,241 | INFO     | job summary report
[2025-11-27 01:49:19] 2025-11-27 06:48:14,241 | INFO     | --------------------------------------------------
[2025-11-27 01:49:19] 2025-11-27 06:48:14,241 | INFO     | PanDA job id: 6897487108
[2025-11-27 01:49:19] 2025-11-27 06:48:14,241 | INFO     | task id: 47556161
[2025-11-27 01:49:19] 2025-11-27 06:48:14,241 | INFO     | errors: (none)
[2025-11-27 01:49:19] 2025-11-27 06:48:14,241 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 01:49:19] 2025-11-27 06:48:14,242 | INFO     | pilot state: finished 
[2025-11-27 01:49:19] 2025-11-27 06:48:14,242 | INFO     | transexitcode: 0
[2025-11-27 01:49:19] 2025-11-27 06:48:14,242 | INFO     | exeerrorcode: 0
[2025-11-27 01:49:19] 2025-11-27 06:48:14,242 | INFO     | exeerrordiag: 
[2025-11-27 01:49:19] 2025-11-27 06:48:14,242 | INFO     | exitcode: 0
[2025-11-27 01:49:19] 2025-11-27 06:48:14,243 | INFO     | exitmsg: OK
[2025-11-27 01:49:19] 2025-11-27 06:48:14,243 | INFO     | cpuconsumptiontime: 354814 s
[2025-11-27 01:49:19] 2025-11-27 06:48:14,243 | INFO     | nevents: 1000
[2025-11-27 01:49:19] 2025-11-27 06:48:14,243 | INFO     | neventsw: 0
[2025-11-27 01:49:19] 2025-11-27 06:48:14,243 | INFO     | pid: 7822
[2025-11-27 01:49:19] 2025-11-27 06:48:14,243 | INFO     | pgrp: 7822
[2025-11-27 01:49:19] 2025-11-27 06:48:14,244 | INFO     | corecount: 8
[2025-11-27 01:49:19] 2025-11-27 06:48:14,244 | INFO     | event service: False
[2025-11-27 01:49:19] 2025-11-27 06:48:14,244 | INFO     | sizes: {0: 2284094, 1: 2284293, 6: 2284555, 12: 2284583, 45764: 2330812, 45769: 2339806, 45771: 2339990, 45779: 2340236}
[2025-11-27 01:49:19] 2025-11-27 06:48:14,244 | INFO     | --------------------------------------------------
[2025-11-27 01:49:19] 2025-11-27 06:48:14,244 | INFO     | 
[2025-11-27 01:49:19] 2025-11-27 06:48:14,245 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-27 01:49:19] 2025-11-27 06:48:14,275 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 01:49:19] 2025-11-27 06:48:14,276 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 01:49:19] 2025-11-27 06:48:14,276 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 01:49:19] 2025-11-27 06:48:14,276 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 01:49:19] 2025-11-27 06:48:14,276 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 01:49:19] 2025-11-27 06:48:14,276 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 01:49:19] 2025-11-27 06:48:14,277 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 01:49:19] 2025-11-27 06:48:14,277 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 01:49:19] 2025-11-27 06:48:14,277 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 01:49:19] 2025-11-27 06:48:14,277 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 01:49:19] 2025-11-27 06:48:14,278 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 01:49:19] 2025-11-27 06:48:14,278 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 01:49:19] 2025-11-27 06:48:14,278 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 01:49:19] 2025-11-27 06:48:14,278 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 01:49:19] 2025-11-27 06:48:14,278 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 01:49:19] 2025-11-27 06:48:14,279 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 01:49:19] 2025-11-27 06:48:14,279 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 01:49:19] 2025-11-27 06:48:14,279 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 01:49:19] 2025-11-27 06:48:14,279 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 01:49:19] 2025-11-27 06:48:14,280 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 01:49:19] 2025-11-27 06:48:14,280 | INFO     | job 6897487108 has completed (purged errors)
[2025-11-27 01:49:19] 2025-11-27 06:48:14,280 | INFO     | overall cleanup function is called
[2025-11-27 01:49:19] 2025-11-27 06:48:15,296 | INFO     | --- collectZombieJob: --- 10, [7822]
[2025-11-27 01:49:19] 2025-11-27 06:48:15,296 | INFO     | zombie collector waiting for pid 7822
[2025-11-27 01:49:19] 2025-11-27 06:48:15,297 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 01:49:19] 2025-11-27 06:48:15,297 | INFO     | collected zombie processes
[2025-11-27 01:49:19] 2025-11-27 06:48:15,297 | INFO     | will attempt to kill all subprocesses of pid=7822
[2025-11-27 01:49:19] 2025-11-27 06:48:15,393 | INFO     | process IDs to be killed: [7822] (in reverse order)
[2025-11-27 01:49:19] 2025-11-27 06:48:15,448 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 01:49:19] 2025-11-27 06:48:15,449 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 01:49:19] 2025-11-27 06:48:15,455 | INFO     | did not find any defunct processes belonging to 7822
[2025-11-27 01:49:19] 2025-11-27 06:48:15,458 | INFO     | did not find any defunct processes belonging to 7822
[2025-11-27 01:49:19] 2025-11-27 06:48:15,460 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 01:49:19] 2025-11-27 06:48:15,461 | INFO     | ready for new job
[2025-11-27 01:49:19] 2025-11-27 06:48:15,461 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 01:49:19] 2025-11-27 06:48:15,464 | INFO     | ***************************************
[2025-11-27 01:49:19] 2025-11-27 06:48:15,464 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 01:49:19] 2025-11-27 06:48:15,465 | INFO     | ***************************************
[2025-11-27 01:49:19] 2025-11-27 06:48:15,465 | INFO     | 
[2025-11-27 01:49:19] 2025-11-27 06:48:15,465 | INFO     | architecture information:
[2025-11-27 01:49:19] 2025-11-27 06:48:15,466 | INFO     | executing command: cat /etc/os-release
[2025-11-27 01:49:19] 2025-11-27 06:48:15,484 | INFO     | cat /etc/os-release:
[2025-11-27 01:49:19] NAME="CentOS Linux"
[2025-11-27 01:49:19] VERSION="7 (Core)"
[2025-11-27 01:49:19] ID="centos"
[2025-11-27 01:49:19] ID_LIKE="rhel fedora"
[2025-11-27 01:49:19] VERSION_ID="7"
[2025-11-27 01:49:19] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 01:49:19] ANSI_COLOR="0;31"
[2025-11-27 01:49:19] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 01:49:19] HOME_URL="https://www.centos.org/"
[2025-11-27 01:49:19] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 01:49:19] 
[2025-11-27 01:49:19] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 01:49:19] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 01:49:19] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 01:49:19] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 01:49:19] 
[2025-11-27 01:49:19] 2025-11-27 06:48:15,485 | INFO     | ***************************************
[2025-11-27 01:49:19] 2025-11-27 06:48:15,988 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-27 01:49:19] 2025-11-27 06:48:16,007 | INFO     | sufficient remaining disk space (17424187392 B)
[2025-11-27 01:49:19] 2025-11-27 06:48:16,008 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 01:49:19] 2025-11-27 06:48:16,009 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 01:49:19] 2025-11-27 06:48:16,009 | INFO     | update_server=False
[2025-11-27 01:49:19] 2025-11-27 06:48:16,009 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 01:49:19] 2025-11-27 06:48:16,010 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 01:49:19] 2025-11-27 06:48:16,010 | INFO     | aborting loop
[2025-11-27 01:49:19] 2025-11-27 06:48:16,010 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 01:49:19] 2025-11-27 06:48:16,011 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 01:49:19] 2025-11-27 06:48:16,325 | INFO     | all job control threads have been joined
[2025-11-27 01:49:19] 2025-11-27 06:48:16,436 | INFO     | all payload control threads have been joined
[2025-11-27 01:49:19] 2025-11-27 06:48:16,491 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 01:49:19] 2025-11-27 06:48:16,882 | INFO     | all data control threads have been joined
[2025-11-27 01:49:19] 2025-11-27 06:48:17,015 | INFO     | [job] retrieve thread has finished
[2025-11-27 01:49:19] 2025-11-27 06:48:17,016 | INFO     | [job] job monitor thread has finished
[2025-11-27 01:49:19] 2025-11-27 06:48:17,016 | INFO     | [job] queue monitor thread has finished
[2025-11-27 01:49:19] 2025-11-27 06:48:17,098 | INFO     | [payload] failed_post thread has finished
[2025-11-27 01:49:19] 2025-11-27 06:48:17,166 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 01:49:19] 2025-11-27 06:48:17,191 | INFO     | [data] copytool_in thread has finished
[2025-11-27 01:49:19] 2025-11-27 06:48:17,331 | INFO     | [job] control thread has finished
[2025-11-27 01:49:19] 2025-11-27 06:48:17,428 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 01:49:19] 2025-11-27 06:48:17,441 | INFO     | [payload] control thread has finished
[2025-11-27 01:49:19] 2025-11-27 06:48:17,747 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 01:49:19] 2025-11-27 06:48:17,888 | INFO     | [data] control thread has finished
[2025-11-27 01:49:19] 2025-11-27 06:48:17,922 | INFO     | [job] validate thread has finished
[2025-11-27 01:49:19] 2025-11-27 06:48:17,969 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 01:49:19] 2025-11-27 06:48:17,983 | INFO     | [payload] validate_post thread has finished
[2025-11-27 01:49:19] 2025-11-27 06:48:18,497 | INFO     | [data] copytool_out thread has finished
[2025-11-27 01:49:19] 2025-11-27 06:48:20,017 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 01:49:19] 2025-11-27 06:48:45,811 | INFO     | PID=32527 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-27 01:49:19] 2025-11-27 06:48:45,811 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 01:49:19] 2025-11-27 06:48:45,811 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 01:49:19] 2025-11-27 06:48:45,812 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 01:49:19] 2025-11-27 06:49:13,379 | INFO     | [monitor] cgroup control has ended
[2025-11-27 01:49:19] 2025-11-27 06:49:13,994 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139641319245632)>', '<ExcThread(monitor, started 139640510076672)>']
[2025-11-27 01:49:19] 2025-11-27 06:49:14,960 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 01:49:19] 2025-11-27 06:49:14,960 | INFO     | [monitor] control thread has ended
[2025-11-27 01:49:19] 2025-11-27 06:49:19,018 | INFO     | all workflow threads have been joined
[2025-11-27 01:49:19] 2025-11-27 06:49:19,019 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 01:49:19] 2025-11-27 06:49:19,019 | INFO     | traces error code: 0
[2025-11-27 01:49:19] 2025-11-27 06:49:19,020 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 01:49:19] 2025-11-27 06:49:19,132 [wrapper] ==== pilot stdout END ====
[2025-11-27 01:49:19] 2025-11-27 06:49:19,137 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 01:49:19] 2025-11-27 06:49:19,142 [wrapper] pilotpid: 32527
[2025-11-27 01:49:19] 2025-11-27 06:49:19,146 [wrapper] Pilot exit status: 0
[2025-11-27 01:49:19] 2025-11-27 06:49:19,162 [wrapper] pandaids: 6897487108
[2025-11-27 01:49:19] 2025-11-27 06:49:19,215 [wrapper] cleanup supervisor_pilot 25176 32528
[2025-11-27 01:49:19] 2025-11-27 06:49:19,221 [wrapper] Test setup, not cleaning
[2025-11-27 01:49:19] 2025-11-27 06:49:19,226 [wrapper] apfmon messages muted
[2025-11-27 01:49:19] 2025-11-27 06:49:19,230 [wrapper] ==== wrapper stdout END ====
[2025-11-27 01:49:19] 2025-11-27 06:49:19,235 [wrapper] ==== wrapper stderr END ====
[2025-11-27 01:49:19]  *** Error codes and diagnostics ***
[2025-11-27 01:49:19]     "exeErrorCode": 0,
[2025-11-27 01:49:19]     "exeErrorDiag": "",
[2025-11-27 01:49:19]     "pilotErrorCode": 0,
[2025-11-27 01:49:19]     "pilotErrorDiag": "",
[2025-11-27 01:49:19]  *** Listing of results directory ***
[2025-11-27 01:49:19] total 1326308
[2025-11-27 01:49:19] -rw-r--r-- 1 boincer umatlas    576529 Nov 25 11:48 pilot3.tar.gz
[2025-11-27 01:49:19] -rw-r--r-- 1 boincer umatlas      5112 Nov 25 11:55 queuedata.json
[2025-11-27 01:49:19] -rwx------ 1 boincer umatlas     36292 Nov 25 11:57 runpilot2-wrapper.sh
[2025-11-27 01:49:19] -rw-r--r-- 1 boincer umatlas       100 Nov 26 13:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 01:49:19] -rwxr-xr-x 1 boincer umatlas      7986 Nov 26 13:04 run_atlas
[2025-11-27 01:49:19] -rw-r--r-- 1 boincer umatlas       105 Nov 26 13:04 job.xml
[2025-11-27 01:49:19] -rw-r--r-- 2 boincer umatlas 410537816 Nov 26 13:04 EVNT.47483658._002245.pool.root.1
[2025-11-27 01:49:19] -rw-r--r-- 2 boincer umatlas     15847 Nov 26 13:04 start_atlas.sh
[2025-11-27 01:49:19] drwxrwx--x 2 boincer umatlas      4096 Nov 26 13:04 shared
[2025-11-27 01:49:19] -rw-r--r-- 2 boincer umatlas    590106 Nov 26 13:04 input.tar.gz
[2025-11-27 01:49:19] -rw-r--r-- 1 boincer umatlas         0 Nov 26 13:04 boinc_lockfile
[2025-11-27 01:49:19] -rw-r--r-- 1 boincer umatlas      2786 Nov 26 13:04 pandaJob.out
[2025-11-27 01:49:19] -rw------- 1 boincer umatlas        57 Nov 26 13:04 setup.sh.local
[2025-11-27 01:49:19] -rw------- 1 boincer umatlas    991530 Nov 26 13:04 agis_schedconf.cvmfs.json
[2025-11-27 01:49:19] drwx------ 5 boincer umatlas      4096 Nov 26 13:04 pilot3
[2025-11-27 01:49:19] -rw-r--r-- 1 boincer umatlas       532 Nov 27 01:37 boinc_task_state.xml
[2025-11-27 01:49:19] -rw------- 1 boincer umatlas 927043702 Nov 27 01:47 HITS.47556161._002287.pool.root.1
[2025-11-27 01:49:19] -rw-r--r-- 1 boincer umatlas      5913 Nov 27 01:47 init_data.xml
[2025-11-27 01:49:19] -rw------- 1 boincer umatlas      1062 Nov 27 01:47 memory_monitor_summary.json
[2025-11-27 01:49:19] -rw------- 1 boincer umatlas   1516240 Nov 27 01:48 agis_ddmendpoints.agis.ALL.json
[2025-11-27 01:49:19] -rw------- 1 boincer umatlas   2008119 Nov 27 01:48 log.47556161._002287.job.log.tgz.1
[2025-11-27 01:49:19] -rw------- 1 boincer umatlas        95 Nov 27 01:48 pilot_heartbeat.json
[2025-11-27 01:49:19] -rw------- 1 boincer umatlas      8659 Nov 27 01:48 heartbeat.json
[2025-11-27 01:49:19] -rw-r--r-- 1 boincer umatlas        29 Nov 27 01:48 wrapper_checkpoint.txt
[2025-11-27 01:49:19] -rw-r--r-- 1 boincer umatlas      8192 Nov 27 01:48 boinc_mmap_file
[2025-11-27 01:49:19] -rw------- 1 boincer umatlas      4746 Nov 27 01:49 pilotlog.txt
[2025-11-27 01:49:19] -rw------- 1 boincer umatlas   6310906 Nov 27 01:49 log.47556161._002287.job.log.1
[2025-11-27 01:49:19] -rw------- 1 boincer umatlas       353 Nov 27 01:49 output.list
[2025-11-27 01:49:19] -rw-r--r-- 1 boincer umatlas       620 Nov 27 01:49 runtime_log
[2025-11-27 01:49:19] -rw------- 1 boincer umatlas   8335360 Nov 27 01:49 result.tar.gz
[2025-11-27 01:49:19] -rw-r--r-- 1 boincer umatlas      9343 Nov 27 01:49 runtime_log.err
[2025-11-27 01:49:19] -rw------- 1 boincer umatlas       668 Nov 27 01:49 rb9KDmGXBi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm9aJKDmNX676n.diag
[2025-11-27 01:49:19] -rw-r--r-- 1 boincer umatlas     21428 Nov 27 01:49 stderr.txt
[2025-11-27 01:49:19] HITS file was successfully produced:
[2025-11-27 01:49:19] -rw------- 1 boincer umatlas 927043702 Nov 27 01:47 shared/HITS.pool.root.1
[2025-11-27 01:49:19]  *** Contents of shared directory: ***
[2025-11-27 01:49:19] total 1314980
[2025-11-27 01:49:19] -rw-r--r-- 2 boincer umatlas 410537816 Nov 26 13:04 ATLAS.root_0
[2025-11-27 01:49:19] -rw-r--r-- 2 boincer umatlas     15847 Nov 26 13:04 start_atlas.sh
[2025-11-27 01:49:19] -rw-r--r-- 2 boincer umatlas    590106 Nov 26 13:04 input.tar.gz
[2025-11-27 01:49:19] -rw------- 1 boincer umatlas 927043702 Nov 27 01:47 HITS.pool.root.1
[2025-11-27 01:49:19] -rw------- 1 boincer umatlas   8335360 Nov 27 01:49 result.tar.gz
01:49:21 (28826): run_atlas exited; CPU time 350984.905669
01:49:21 (28826): called boinc_finish(0)

</stderr_txt>
]]>

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