Stderr output

<core_client_version>8.3.0</core_client_version>
<![CDATA[
<stderr_txt>
01:14:58 (4015373): wrapper (7.7.26015): starting
01:14:58 (4015373): wrapper: running run_atlas (--nthreads 4)
[2025-11-28 01:14:58] Arguments: --nthreads 4
[2025-11-28 01:14:58] Threads: 4
[2025-11-28 01:14:58] Checking for CVMFS
[2025-11-28 01:14:59] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-28 01:14:59] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-28 01:14:59] Running cvmfs_config stat atlas.cern.ch
[2025-11-28 01:14:59] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-28 01:14:59] 2.13.2.0 698859 11184 48600 153399 2 90 4027386 4096000 3300 130560 0 17114843 99.966 695980 1020 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 0
[2025-11-28 01:14:59] CVMFS is ok
[2025-11-28 01:14:59] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-28 01:14:59] Small home clusters do not require a local http proxy but it is suggested if
[2025-11-28 01:14:59] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-11-28 01:14:59] Further information can be found at the LHC@home message board.
[2025-11-28 01:14:59] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-28 01:14:59] Checking for apptainer binary...
[2025-11-28 01:14:59] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-28 01:14:59] Running /usr/bin/apptainer --version
[2025-11-28 01:14:59] apptainer version 1.4.3
[2025-11-28 01:14:59] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-28 01:14:59] Taichi-Ubuntu
[2025-11-28 01:14:59] apptainer works
[2025-11-28 01:14:59] Set ATHENA_PROC_NUMBER=4
[2025-11-28 01:14:59] Set ATHENA_CORE_NUMBER=4
[2025-11-28 01:14:59] Starting ATLAS job with PandaID=6896558431
[2025-11-28 01:14:59] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/whitlerd/Desktop/BOINC/slots/10 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 12:52:27]  *** The last 200 lines of the pilot log: ***
[2025-11-28 12:52:27] 2025-11-28 17:51:54,990 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 12:52:27] 2025-11-28 17:51:55,097 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-28 12:52:27] 2025-11-28 17:51:55,102 | INFO     | found 24 cores (24 cores per socket, 1 socket) HT, CPU MHz: 2981.9522916666665
[2025-11-28 12:52:27] 2025-11-28 17:51:55,109 | INFO     | using path: /home/whitlerd/Desktop/BOINC/slots/10/PanDA_Pilot-6896558431/memory_monitor_summary.json (trf name=prmon)
[2025-11-28 12:52:27] 2025-11-28 17:51:55,109 | INFO     | extracted standard info from prmon json
[2025-11-28 12:52:27] 2025-11-28 17:51:55,109 | INFO     | extracted standard memory fields from prmon json
[2025-11-28 12:52:27] 2025-11-28 17:51:55,109 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-28 12:52:27] 2025-11-28 17:51:55,117 | INFO     | fitting pss+swap vs Time
[2025-11-28 12:52:27] 2025-11-28 17:51:55,117 | INFO     | sum of square deviations: 99666501270.0
[2025-11-28 12:52:27] 2025-11-28 17:51:55,122 | INFO     | sum of deviations: 417823380087.99994
[2025-11-28 12:52:27] 2025-11-28 17:51:55,123 | INFO     | mean x: 1764331399.0
[2025-11-28 12:52:27] 2025-11-28 17:51:55,123 | INFO     | mean y: 2254582.998540146
[2025-11-28 12:52:27] 2025-11-28 17:51:55,123 | INFO     | intersect: -7394201591.664665
[2025-11-28 12:52:27] 2025-11-28 17:51:55,123 | INFO     | chi2: 3.8170588084454087
[2025-11-28 12:52:27] 2025-11-28 17:51:55,124 | INFO     | sum of square deviations: 97499911810.0
[2025-11-28 12:52:27] 2025-11-28 17:51:55,129 | INFO     | sum of deviations: 524732299453.5
[2025-11-28 12:52:27] 2025-11-28 17:51:55,129 | INFO     | mean x: 1764331246.5
[2025-11-28 12:52:27] 2025-11-28 17:51:55,129 | INFO     | mean y: 2262089.8838235294
[2025-11-28 12:52:27] 2025-11-28 17:51:55,129 | INFO     | intersect: -9493147442.15486
[2025-11-28 12:52:27] 2025-11-28 17:51:55,130 | INFO     | chi2: 2.153669835127679
[2025-11-28 12:52:27] 2025-11-28 17:51:55,130 | INFO     | current chi2=2.153669835127679 (change=43.57776646347207 %)
[2025-11-28 12:52:27] 2025-11-28 17:51:55,130 | INFO     | sum of square deviations: 95364950850.0
[2025-11-28 12:52:27] 2025-11-28 17:51:55,135 | INFO     | sum of deviations: 518265872118.0
[2025-11-28 12:52:27] 2025-11-28 17:51:55,135 | INFO     | mean x: 1764331094.0
[2025-11-28 12:52:27] 2025-11-28 17:51:55,135 | INFO     | mean y: 2261628.0044444446
[2025-11-28 12:52:27] 2025-11-28 17:51:55,135 | INFO     | intersect: -9586089070.933865
[2025-11-28 12:52:27] 2025-11-28 17:51:55,136 | INFO     | chi2: 2.1525296971219285
[2025-11-28 12:52:27] 2025-11-28 17:51:55,136 | INFO     | current chi2=2.1525296971219285 (change=0.0529393125702905 %)
[2025-11-28 12:52:27] 2025-11-28 17:51:55,136 | INFO     | right removable region: 674
[2025-11-28 12:52:27] 2025-11-28 17:51:55,136 | INFO     | sum of square deviations: 97499911810.0
[2025-11-28 12:52:27] 2025-11-28 17:51:55,142 | INFO     | sum of deviations: 280691709077.5
[2025-11-28 12:52:27] 2025-11-28 17:51:55,142 | INFO     | mean x: 1764331551.5
[2025-11-28 12:52:27] 2025-11-28 17:51:55,142 | INFO     | mean y: 2264216.160294118
[2025-11-28 12:52:27] 2025-11-28 17:51:55,142 | INFO     | intersect: -5077055645.53315
[2025-11-28 12:52:27] 2025-11-28 17:51:55,142 | INFO     | chi2: 1.753584839305128
[2025-11-28 12:52:27] 2025-11-28 17:51:55,142 | INFO     | current chi2=1.753584839305128 (change=54.059265856076266 %)
[2025-11-28 12:52:27] 2025-11-28 17:51:55,143 | INFO     | sum of square deviations: 95364950850.0
[2025-11-28 12:52:27] 2025-11-28 17:51:55,148 | INFO     | sum of deviations: 259241447555.99976
[2025-11-28 12:52:27] 2025-11-28 17:51:55,148 | INFO     | mean x: 1764331704.0
[2025-11-28 12:52:27] 2025-11-28 17:51:55,148 | INFO     | mean y: 2265748.005925926
[2025-11-28 12:52:27] 2025-11-28 17:51:55,148 | INFO     | intersect: -4793918812.853664
[2025-11-28 12:52:27] 2025-11-28 17:51:55,148 | INFO     | chi2: 1.7337014947845513
[2025-11-28 12:52:27] 2025-11-28 17:51:55,148 | INFO     | current chi2=1.7337014947845513 (change=1.133868409152976 %)
[2025-11-28 12:52:27] 2025-11-28 17:51:55,149 | INFO     | left removable region: 20
[2025-11-28 12:52:27] 2025-11-28 17:51:55,149 | INFO     | sum of square deviations: 86738249567.5
[2025-11-28 12:52:27] 2025-11-28 17:51:55,154 | INFO     | sum of deviations: 325141694310.00006
[2025-11-28 12:52:27] 2025-11-28 17:51:55,154 | INFO     | mean x: 1764331673.5
[2025-11-28 12:52:27] 2025-11-28 17:51:55,154 | INFO     | mean y: 2275601.003058104
[2025-11-28 12:52:27] 2025-11-28 17:51:55,154 | INFO     | intersect: -6611390140.546929
[2025-11-28 12:52:27] 2025-11-28 17:51:55,154 | INFO     | chi2: 0.03796681432995525
[2025-11-28 12:52:27] 2025-11-28 17:51:55,154 | INFO     | current memory leak: 3.75 B/s (using 654 data points, chi2=0.04)
[2025-11-28 12:52:27] 2025-11-28 17:51:55,155 | INFO     | could have reported an average CPU frequency of 3075 MHz (27 samples)
[2025-11-28 12:52:27] 2025-11-28 17:51:55,155 | INFO     | ..............................
[2025-11-28 12:52:27] 2025-11-28 17:51:55,155 | INFO     | . Timing measurements:
[2025-11-28 12:52:27] 2025-11-28 17:51:55,155 | INFO     | . get job = 0 s
[2025-11-28 12:52:27] 2025-11-28 17:51:55,155 | INFO     | . initial setup = 3 s
[2025-11-28 12:52:27] 2025-11-28 17:51:55,155 | INFO     | . payload setup = 5 s
[2025-11-28 12:52:27] 2025-11-28 17:51:55,155 | INFO     | . stage-in = 0 s
[2025-11-28 12:52:27] 2025-11-28 17:51:55,155 | INFO     | . payload execution = 41767 s
[2025-11-28 12:52:27] 2025-11-28 17:51:55,155 | INFO     | . stage-out = 3 s
[2025-11-28 12:52:27] 2025-11-28 17:51:55,155 | INFO     | . log creation = 0 s
[2025-11-28 12:52:27] 2025-11-28 17:51:55,155 | INFO     | ..............................
[2025-11-28 12:52:27] 2025-11-28 17:51:55,297 | INFO     | 
[2025-11-28 12:52:27] 2025-11-28 17:51:55,297 | INFO     | job summary report
[2025-11-28 12:52:27] 2025-11-28 17:51:55,298 | INFO     | --------------------------------------------------
[2025-11-28 12:52:27] 2025-11-28 17:51:55,298 | INFO     | PanDA job id: 6896558431
[2025-11-28 12:52:27] 2025-11-28 17:51:55,298 | INFO     | task id: 47556161
[2025-11-28 12:52:27] 2025-11-28 17:51:55,298 | INFO     | errors: (none)
[2025-11-28 12:52:27] 2025-11-28 17:51:55,298 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-28 12:52:27] 2025-11-28 17:51:55,298 | INFO     | pilot state: finished 
[2025-11-28 12:52:27] 2025-11-28 17:51:55,298 | INFO     | transexitcode: 0
[2025-11-28 12:52:27] 2025-11-28 17:51:55,298 | INFO     | exeerrorcode: 0
[2025-11-28 12:52:27] 2025-11-28 17:51:55,298 | INFO     | exeerrordiag: 
[2025-11-28 12:52:27] 2025-11-28 17:51:55,298 | INFO     | exitcode: 0
[2025-11-28 12:52:27] 2025-11-28 17:51:55,298 | INFO     | exitmsg: OK
[2025-11-28 12:52:27] 2025-11-28 17:51:55,298 | INFO     | cpuconsumptiontime: 166463 s
[2025-11-28 12:52:27] 2025-11-28 17:51:55,298 | INFO     | nevents: 1000
[2025-11-28 12:52:27] 2025-11-28 17:51:55,298 | INFO     | neventsw: 0
[2025-11-28 12:52:27] 2025-11-28 17:51:55,298 | INFO     | pid: 4026083
[2025-11-28 12:52:27] 2025-11-28 17:51:55,298 | INFO     | pgrp: 4026083
[2025-11-28 12:52:27] 2025-11-28 17:51:55,298 | INFO     | corecount: 4
[2025-11-28 12:52:27] 2025-11-28 17:51:55,298 | INFO     | event service: False
[2025-11-28 12:52:27] 2025-11-28 17:51:55,298 | INFO     | sizes: {0: 2284277, 1: 2284277, 4: 2284567, 11: 2284595, 41777: 2328713, 41778: 2328712, 41783: 2337920, 41785: 2337976, 41789: 2338222}
[2025-11-28 12:52:27] 2025-11-28 17:51:55,298 | INFO     | --------------------------------------------------
[2025-11-28 12:52:27] 2025-11-28 17:51:55,299 | INFO     | 
[2025-11-28 12:52:27] 2025-11-28 17:51:55,299 | INFO     | executing command: ls -lF /home/whitlerd/Desktop/BOINC/slots/10
[2025-11-28 12:52:27] 2025-11-28 17:51:55,322 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-28 12:52:27] 2025-11-28 17:51:55,322 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-28 12:52:27] 2025-11-28 17:51:55,322 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-28 12:52:27] 2025-11-28 17:51:55,322 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-28 12:52:27] 2025-11-28 17:51:55,322 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-28 12:52:27] 2025-11-28 17:51:55,322 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-28 12:52:27] 2025-11-28 17:51:55,322 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-28 12:52:27] 2025-11-28 17:51:55,322 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-28 12:52:27] 2025-11-28 17:51:55,322 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-28 12:52:27] 2025-11-28 17:51:55,322 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-28 12:52:27] 2025-11-28 17:51:55,322 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-28 12:52:27] 2025-11-28 17:51:55,322 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-28 12:52:27] 2025-11-28 17:51:55,323 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-28 12:52:27] 2025-11-28 17:51:55,323 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-28 12:52:27] 2025-11-28 17:51:55,323 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-28 12:52:27] 2025-11-28 17:51:55,323 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-28 12:52:27] 2025-11-28 17:51:55,323 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-28 12:52:27] 2025-11-28 17:51:55,323 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-28 12:52:27] 2025-11-28 17:51:55,323 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-28 12:52:27] 2025-11-28 17:51:55,323 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-28 12:52:27] 2025-11-28 17:51:55,323 | INFO     | job 6896558431 has completed (purged errors)
[2025-11-28 12:52:27] 2025-11-28 17:51:55,323 | INFO     | overall cleanup function is called
[2025-11-28 12:52:27] 2025-11-28 17:51:56,336 | INFO     | --- collectZombieJob: --- 10, [4026083]
[2025-11-28 12:52:27] 2025-11-28 17:51:56,337 | INFO     | zombie collector waiting for pid 4026083
[2025-11-28 12:52:27] 2025-11-28 17:51:56,337 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-28 12:52:27] 2025-11-28 17:51:56,337 | INFO     | collected zombie processes
[2025-11-28 12:52:27] 2025-11-28 17:51:56,337 | INFO     | will attempt to kill all subprocesses of pid=4026083
[2025-11-28 12:52:27] 2025-11-28 17:51:56,542 | INFO     | process IDs to be killed: [4026083] (in reverse order)
[2025-11-28 12:52:27] 2025-11-28 17:51:56,626 | WARNING  | found no corresponding commands to process id(s)
[2025-11-28 12:52:27] 2025-11-28 17:51:56,626 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-28 12:52:27] 2025-11-28 17:51:56,635 | INFO     | did not find any defunct processes belonging to 4026083
[2025-11-28 12:52:27] 2025-11-28 17:51:56,643 | INFO     | did not find any defunct processes belonging to 4026083
[2025-11-28 12:52:27] 2025-11-28 17:51:56,644 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 12:52:27] 2025-11-28 17:51:56,644 | INFO     | ready for new job
[2025-11-28 12:52:27] 2025-11-28 17:51:56,644 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 12:52:27] 2025-11-28 17:51:56,650 | INFO     | ***************************************
[2025-11-28 12:52:27] 2025-11-28 17:51:56,650 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 12:52:27] 2025-11-28 17:51:56,650 | INFO     | ***************************************
[2025-11-28 12:52:27] 2025-11-28 17:51:56,650 | INFO     | 
[2025-11-28 12:52:27] 2025-11-28 17:51:56,653 | INFO     | architecture information:
[2025-11-28 12:52:27] 2025-11-28 17:51:56,654 | INFO     | executing command: cat /etc/os-release
[2025-11-28 12:52:27] 2025-11-28 17:51:56,674 | INFO     | cat /etc/os-release:
[2025-11-28 12:52:27] NAME="CentOS Linux"
[2025-11-28 12:52:27] VERSION="7 (Core)"
[2025-11-28 12:52:27] ID="centos"
[2025-11-28 12:52:27] ID_LIKE="rhel fedora"
[2025-11-28 12:52:27] VERSION_ID="7"
[2025-11-28 12:52:27] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 12:52:27] ANSI_COLOR="0;31"
[2025-11-28 12:52:27] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 12:52:27] HOME_URL="https://www.centos.org/"
[2025-11-28 12:52:27] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 12:52:27] 
[2025-11-28 12:52:27] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 12:52:27] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 12:52:27] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 12:52:27] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 12:52:27] 
[2025-11-28 12:52:27] 2025-11-28 17:51:56,674 | INFO     | ***************************************
[2025-11-28 12:52:27] 2025-11-28 17:51:57,177 | INFO     | executing command: df -mP /home/whitlerd/Desktop/BOINC/slots/10
[2025-11-28 12:52:27] 2025-11-28 17:51:57,199 | INFO     | sufficient remaining disk space (388111532032 B)
[2025-11-28 12:52:27] 2025-11-28 17:51:57,199 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 12:52:27] 2025-11-28 17:51:57,200 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 12:52:27] 2025-11-28 17:51:57,200 | INFO     | update_server=False
[2025-11-28 12:52:27] 2025-11-28 17:51:57,200 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 12:52:27] 2025-11-28 17:51:57,200 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 12:52:27] 2025-11-28 17:51:57,200 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 12:52:27] 2025-11-28 17:51:57,200 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 12:52:27] 2025-11-28 17:51:57,493 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-28 12:52:27] 2025-11-28 17:51:57,494 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-28 12:52:27] 2025-11-28 17:51:57,494 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 12:52:27] 2025-11-28 17:51:57,494 | INFO     | will abort loop
[2025-11-28 12:52:27] 2025-11-28 17:51:57,847 | INFO     | all data control threads have been joined
[2025-11-28 12:52:27] 2025-11-28 17:51:58,205 | INFO     | [job] retrieve thread has finished
[2025-11-28 12:52:27] 2025-11-28 17:51:58,206 | INFO     | [job] queue monitor thread has finished
[2025-11-28 12:52:27] 2025-11-28 17:51:58,270 | INFO     | all payload control threads have been joined
[2025-11-28 12:52:27] 2025-11-28 17:51:58,378 | INFO     | all job control threads have been joined
[2025-11-28 12:52:27] 2025-11-28 17:51:58,403 | INFO     | [payload] failed_post thread has finished
[2025-11-28 12:52:27] 2025-11-28 17:51:58,498 | INFO     | [job] job monitor thread has finished
[2025-11-28 12:52:27] 2025-11-28 17:51:58,732 | INFO     | [data] copytool_in thread has finished
[2025-11-28 12:52:27] 2025-11-28 17:51:58,741 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 12:52:27] 2025-11-28 17:51:58,853 | INFO     | [data] control thread has finished
[2025-11-28 12:52:27] 2025-11-28 17:51:59,018 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 12:52:27] 2025-11-28 17:51:59,078 | INFO     | [job] validate thread has finished
[2025-11-28 12:52:27] 2025-11-28 17:51:59,206 | INFO     | [data] copytool_out thread has finished
[2025-11-28 12:52:27] 2025-11-28 17:51:59,268 | INFO     | [payload] validate_post thread has finished
[2025-11-28 12:52:27] 2025-11-28 17:51:59,276 | INFO     | [payload] control thread has finished
[2025-11-28 12:52:27] 2025-11-28 17:51:59,341 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 12:52:27] 2025-11-28 17:51:59,384 | INFO     | [job] control thread has finished
[2025-11-28 12:52:27] 2025-11-28 17:51:59,659 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 12:52:27] 2025-11-28 17:52:01,206 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 12:52:27] 2025-11-28 17:52:11,876 | INFO     | [monitor] cgroup control has ended
[2025-11-28 12:52:27] 2025-11-28 17:52:13,215 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 130804809951040)>', '<ExcThread(monitor, started 130804101412608)>']
[2025-11-28 12:52:27] 2025-11-28 17:52:18,220 | INFO     | all workflow threads have been joined
[2025-11-28 12:52:27] 2025-11-28 17:52:18,220 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 12:52:27] 2025-11-28 17:52:18,220 | INFO     | traces error code: 0
[2025-11-28 12:52:27] 2025-11-28 17:52:18,220 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 12:52:27] 2025-11-28 17:52:26,966 | INFO     | PID=4019301 has CPU usage=5.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-28 12:52:27] 2025-11-28 17:52:26,967 | INFO     | .. there are 5 such processes running
[2025-11-28 12:52:27] 2025-11-28 17:52:26,967 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 12:52:27] 2025-11-28 17:52:26,967 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 12:52:27] 2025-11-28 17:52:26,967 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 12:52:27] 2025-11-28 17:52:26,967 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 12:52:27] 2025-11-28 17:52:26,967 | INFO     | [monitor] control thread has ended
[2025-11-28 12:52:27] 2025-11-28 17:52:27,096 [wrapper] ==== pilot stdout END ====
[2025-11-28 12:52:27] 2025-11-28 17:52:27,100 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 12:52:27] 2025-11-28 17:52:27,103 [wrapper] pilotpid: 4019301
[2025-11-28 12:52:27] 2025-11-28 17:52:27,107 [wrapper] Pilot exit status: 0
[2025-11-28 12:52:27] 2025-11-28 17:52:27,118 [wrapper] pandaids: 6896558431
[2025-11-28 12:52:27] 2025-11-28 17:52:27,170 [wrapper] cleanup supervisor_pilot  291095 4019302
[2025-11-28 12:52:27] 2025-11-28 17:52:27,174 [wrapper] Test setup, not cleaning
[2025-11-28 12:52:27] 2025-11-28 17:52:27,177 [wrapper] apfmon messages muted
[2025-11-28 12:52:27] 2025-11-28 17:52:27,180 [wrapper] ==== wrapper stdout END ====
[2025-11-28 12:52:27] 2025-11-28 17:52:27,183 [wrapper] ==== wrapper stderr END ====
[2025-11-28 12:52:27]  *** Error codes and diagnostics ***
[2025-11-28 12:52:27]     "exeErrorCode": 0,
[2025-11-28 12:52:27]     "exeErrorDiag": "",
[2025-11-28 12:52:27]     "pilotErrorCode": 0,
[2025-11-28 12:52:27]     "pilotErrorDiag": "",
[2025-11-28 12:52:27]  *** Listing of results directory ***
[2025-11-28 12:52:27] total 1311312
[2025-11-28 12:52:27] -rw-r--r-- 1 whitlerd whitlerd    576529 Nov 24 23:09 pilot3.tar.gz
[2025-11-28 12:52:27] -rw-r--r-- 1 whitlerd whitlerd      5112 Nov 25 00:05 queuedata.json
[2025-11-28 12:52:27] -rwx------ 1 whitlerd whitlerd     36292 Nov 25 00:08 runpilot2-wrapper.sh
[2025-11-28 12:52:27] -rw-rw-r-- 1 whitlerd whitlerd       100 Nov 28 01:14 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 12:52:27] -rwxr-xr-x 1 whitlerd whitlerd      7986 Nov 28 01:14 run_atlas
[2025-11-28 12:52:27] -rw-rw-r-- 1 whitlerd whitlerd       105 Nov 28 01:14 job.xml
[2025-11-28 12:52:27] -rw-r--r-- 2 whitlerd whitlerd 409407189 Nov 28 01:14 EVNT.47483658._002088.pool.root.1
[2025-11-28 12:52:27] -rw-r--r-- 2 whitlerd whitlerd     15847 Nov 28 01:14 start_atlas.sh
[2025-11-28 12:52:27] drwxrwx--x 2 whitlerd whitlerd      4096 Nov 28 01:14 shared
[2025-11-28 12:52:27] -rw-r--r-- 2 whitlerd whitlerd    590106 Nov 28 01:14 input.tar.gz
[2025-11-28 12:52:27] -rw-rw-r-- 1 whitlerd whitlerd         0 Nov 28 01:14 boinc_setup_complete
[2025-11-28 12:52:27] -rw-rw-r-- 1 whitlerd whitlerd      9370 Nov 28 01:14 init_data.xml
[2025-11-28 12:52:27] -rw-rw-r-- 1 whitlerd whitlerd         0 Nov 28 01:14 boinc_lockfile
[2025-11-28 12:52:27] -rw-rw-r-- 1 whitlerd whitlerd      2784 Nov 28 01:14 pandaJob.out
[2025-11-28 12:52:27] -rw------- 1 whitlerd whitlerd    991858 Nov 28 01:15 agis_schedconf.cvmfs.json
[2025-11-28 12:52:27] drwx------ 5 whitlerd whitlerd      4096 Nov 28 01:15 pilot3
[2025-11-28 12:52:27] -rw-rw-r-- 1 whitlerd whitlerd       533 Nov 28 12:47 boinc_task_state.xml
[2025-11-28 12:52:27] -rw------- 1 whitlerd whitlerd 914509218 Nov 28 12:51 HITS.47556161._000712.pool.root.1
[2025-11-28 12:52:27] -rw------- 1 whitlerd whitlerd      1043 Nov 28 12:51 memory_monitor_summary.json
[2025-11-28 12:52:27] -rw------- 1 whitlerd whitlerd   1516240 Nov 28 12:51 agis_ddmendpoints.agis.ALL.json
[2025-11-28 12:52:27] -rw------- 1 whitlerd whitlerd   1490704 Nov 28 12:51 log.47556161._000712.job.log.tgz.1
[2025-11-28 12:52:27] -rw------- 1 whitlerd whitlerd        95 Nov 28 12:51 pilot_heartbeat.json
[2025-11-28 12:52:27] -rw------- 1 whitlerd whitlerd      8581 Nov 28 12:51 heartbeat.json
[2025-11-28 12:52:27] -rw-rw-r-- 1 whitlerd whitlerd      8192 Nov 28 12:52 boinc_mmap_file
[2025-11-28 12:52:27] -rw-rw-r-- 1 whitlerd whitlerd        29 Nov 28 12:52 wrapper_checkpoint.txt
[2025-11-28 12:52:27] -rw------- 1 whitlerd whitlerd       822 Nov 28 12:52 pilotlog.txt
[2025-11-28 12:52:27] -rw------- 1 whitlerd whitlerd   5984622 Nov 28 12:52 log.47556161._000712.job.log.1
[2025-11-28 12:52:27] -rw------- 1 whitlerd whitlerd       353 Nov 28 12:52 output.list
[2025-11-28 12:52:27] -rw-rw-r-- 1 whitlerd whitlerd       620 Nov 28 12:52 runtime_log
[2025-11-28 12:52:27] -rw------- 1 whitlerd whitlerd   7495680 Nov 28 12:52 result.tar.gz
[2025-11-28 12:52:27] -rw-rw-r-- 1 whitlerd whitlerd      9042 Nov 28 12:52 runtime_log.err
[2025-11-28 12:52:27] -rw------- 1 whitlerd whitlerd       655 Nov 28 12:52 K2aKDmoS0h8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm9KJKDmeDvvwn.diag
[2025-11-28 12:52:27] -rw-rw-r-- 1 whitlerd whitlerd     21381 Nov 28 12:52 stderr.txt
[2025-11-28 12:52:27] HITS file was successfully produced:
[2025-11-28 12:52:27] -rw------- 1 whitlerd whitlerd 914509218 Nov 28 12:51 shared/HITS.pool.root.1
[2025-11-28 12:52:27]  *** Contents of shared directory: ***
[2025-11-28 12:52:27] total 1300812
[2025-11-28 12:52:27] -rw-r--r-- 2 whitlerd whitlerd 409407189 Nov 28 01:14 ATLAS.root_0
[2025-11-28 12:52:27] -rw-r--r-- 2 whitlerd whitlerd     15847 Nov 28 01:14 start_atlas.sh
[2025-11-28 12:52:27] -rw-r--r-- 2 whitlerd whitlerd    590106 Nov 28 01:14 input.tar.gz
[2025-11-28 12:52:27] -rw------- 1 whitlerd whitlerd 914509218 Nov 28 12:51 HITS.pool.root.1
[2025-11-28 12:52:27] -rw------- 1 whitlerd whitlerd   7495680 Nov 28 12:52 result.tar.gz
12:52:29 (4015373): run_atlas exited; CPU time 166620.289638
12:52:29 (4015373): called boinc_finish(0)

</stderr_txt>
]]>

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