Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
17:45:02 (5859): wrapper (7.7.26015): starting
17:45:02 (5859): wrapper: running run_atlas (--nthreads 12)
[2025-11-27 17:45:02] Arguments: --nthreads 12
[2025-11-27 17:45:02] Threads: 12
[2025-11-27 17:45:02] Checking for CVMFS
[2025-11-27 17:45:02] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 17:45:02] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 17:45:02] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 17:45:02] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 17:45:02] 2.13.0.0 4189 313 59216 153373 3 81 2231352 4096001 651 130560 0 221256 99.980 17274 680 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://128.142.248.156:3125 1
[2025-11-27 17:45:02] CVMFS is ok
[2025-11-27 17:45:02] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 17:45:02] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 17:45:02] Further information can be found at the LHC@home message board.
[2025-11-27 17:45:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 17:45:02] Checking for apptainer binary...
[2025-11-27 17:45:02] which: no apptainer in (/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin)
[2025-11-27 17:45:02] apptainer is not installed, using version from CVMFS
[2025-11-27 17:45:02] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 17:45:02] dagobert
[2025-11-27 17:45:02] apptainer works
[2025-11-27 17:45:02] Set ATHENA_PROC_NUMBER=12
[2025-11-27 17:45:02] Set ATHENA_CORE_NUMBER=12
[2025-11-27 17:45:02] Starting ATLAS job with PandaID=6894239143
[2025-11-27 17:45:02] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 19:20:21]  *** The last 200 lines of the pilot log: ***
[2025-11-27 19:20:21]  mtime=0
[2025-11-27 19:20:21]  protocol_id=None
[2025-11-27 19:20:21]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-11-27 19:20:21]  replicas=None
[2025-11-27 19:20:21]  scope=mc23_13p6TeV
[2025-11-27 19:20:21]  status=None
[2025-11-27 19:20:21]  status_code=0
[2025-11-27 19:20:21]  storage_token=
[2025-11-27 19:20:21]  surl=/var/lib/boinc/slots/0/PanDA_Pilot-6894239143/log.47523939._000017.job.log.tgz.1
[2025-11-27 19:20:21]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/bc/c1/log.47523939._000017.job.log.tgz.1
[2025-11-27 19:20:21]  workdir=None
[2025-11-27 19:20:21] ]
[2025-11-27 19:20:21] 2025-11-27 18:19:20,843 | INFO     | transferring file log.47523939._000017.job.log.tgz.1 from /var/lib/boinc/slots/0/PanDA_Pilot-6894239143/log.47523939._000017.job.log.tgz.1 to /var/lib/boinc/slots/
[2025-11-27 19:20:21] 2025-11-27 18:19:20,843 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/0/PanDA_Pilot-6894239143/log.47523939._000017.job.log.tgz.1 /var/lib/boinc/slots/0/log.47523939._000017.job
[2025-11-27 19:20:21] 2025-11-27 18:19:20,851 | INFO     | adding to output.list: log.47523939._000017.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/bc/c1/log.47523939._000017.job.log.tg
[2025-11-27 19:20:21] 2025-11-27 18:19:20,852 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-11-27 19:20:21] 2025-11-27 18:19:20,852 | INFO     | summary of transferred files:
[2025-11-27 19:20:21] 2025-11-27 18:19:20,852 | INFO     |  -- lfn=log.47523939._000017.job.log.tgz.1, status_code=0, status=transferred
[2025-11-27 19:20:21] 2025-11-27 18:19:20,852 | INFO     | stage-out finished correctly
[2025-11-27 19:20:21] 2025-11-27 18:19:20,852 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 19:20:21] 2025-11-27 18:19:20,871 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-11-27 19:20:21] 2025-11-27 18:19:21,500 | INFO     | time since job start (5655s) is within the limit (172800.0s)
[2025-11-27 19:20:21] 2025-11-27 18:19:22,045 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 19:20:21] 2025-11-27 18:19:22,045 | INFO     | job 6894239143 has state=finished
[2025-11-27 19:20:21] 2025-11-27 18:19:22,045 | INFO     | preparing for final server update for job 6894239143 in state='finished'
[2025-11-27 19:20:21] 2025-11-27 18:19:22,045 | INFO     | this job has now completed (state=finished)
[2025-11-27 19:20:21] 2025-11-27 18:19:22,045 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-11-27 19:20:21] 2025-11-27 18:19:22,045 | INFO     | log transfer has been attempted: DONE
[2025-11-27 19:20:21] 2025-11-27 18:19:22,045 | INFO     | job 6894239143 has finished - writing final server update
[2025-11-27 19:20:21] 2025-11-27 18:19:22,045 | INFO     | total number of processed events: 400 (read)
[2025-11-27 19:20:21] 2025-11-27 18:19:22,046 | INFO     | executing command: lscpu
[2025-11-27 19:20:21] 2025-11-27 18:19:22,057 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-27 19:20:21] 2025-11-27 18:19:23,317 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 19:20:21] 2025-11-27 18:19:23,319 | INFO     | found 6 cores (6 cores per socket, 1 socket) HT, CPU MHz: 3484.3711666666672
[2025-11-27 19:20:21] 2025-11-27 18:19:23,320 | INFO     | using path: /var/lib/boinc/slots/0/PanDA_Pilot-6894239143/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 19:20:21] 2025-11-27 18:19:23,320 | INFO     | extracted standard info from prmon json
[2025-11-27 19:20:21] 2025-11-27 18:19:23,320 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 19:20:21] 2025-11-27 18:19:23,321 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 19:20:21] 2025-11-27 18:19:23,321 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-27 19:20:21] 2025-11-27 18:19:23,321 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-27 19:20:21] 2025-11-27 18:19:23,321 | INFO     | fitting pss+swap vs Time
[2025-11-27 19:20:21] 2025-11-27 18:19:23,321 | INFO     | sum of square deviations: 190403570.0
[2025-11-27 19:20:21] 2025-11-27 18:19:23,321 | INFO     | sum of deviations: 33437364720.000004
[2025-11-27 19:20:21] 2025-11-27 18:19:23,322 | INFO     | mean x: 1764264868.0
[2025-11-27 19:20:21] 2025-11-27 18:19:23,322 | INFO     | mean y: 2672897.3529411764
[2025-11-27 19:20:21] 2025-11-27 18:19:23,322 | INFO     | intersect: -309825382606.0111
[2025-11-27 19:20:21] 2025-11-27 18:19:23,322 | INFO     | chi2: 4.303740658261092
[2025-11-27 19:20:21] 2025-11-27 18:19:23,322 | INFO     | current memory leak: 175.61 B/s (using 85 data points, chi2=4.30)
[2025-11-27 19:20:21] 2025-11-27 18:19:23,322 | INFO     | could have reported an average CPU frequency of 4081 MHz (7 samples)
[2025-11-27 19:20:21] 2025-11-27 18:19:23,322 | INFO     | ..............................
[2025-11-27 19:20:21] 2025-11-27 18:19:23,322 | INFO     | . Timing measurements:
[2025-11-27 19:20:21] 2025-11-27 18:19:23,322 | INFO     | . get job = 0 s
[2025-11-27 19:20:21] 2025-11-27 18:19:23,322 | INFO     | . initial setup = 1 s
[2025-11-27 19:20:21] 2025-11-27 18:19:23,322 | INFO     | . payload setup = 80 s
[2025-11-27 19:20:21] 2025-11-27 18:19:23,322 | INFO     | . stage-in = 0 s
[2025-11-27 19:20:21] 2025-11-27 18:19:23,322 | INFO     | . payload execution = 5557 s
[2025-11-27 19:20:21] 2025-11-27 18:19:23,322 | INFO     | . stage-out = 0 s
[2025-11-27 19:20:21] 2025-11-27 18:19:23,322 | INFO     | . log creation = 0 s
[2025-11-27 19:20:21] 2025-11-27 18:19:23,322 | INFO     | ..............................
[2025-11-27 19:20:21] 2025-11-27 18:19:23,344 | INFO     | 
[2025-11-27 19:20:21] 2025-11-27 18:19:23,344 | INFO     | job summary report
[2025-11-27 19:20:21] 2025-11-27 18:19:23,344 | INFO     | --------------------------------------------------
[2025-11-27 19:20:21] 2025-11-27 18:19:23,344 | INFO     | PanDA job id: 6894239143
[2025-11-27 19:20:21] 2025-11-27 18:19:23,344 | INFO     | task id: 47523939
[2025-11-27 19:20:21] 2025-11-27 18:19:23,344 | INFO     | errors: (none)
[2025-11-27 19:20:21] 2025-11-27 18:19:23,344 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 19:20:21] 2025-11-27 18:19:23,344 | INFO     | pilot state: finished 
[2025-11-27 19:20:21] 2025-11-27 18:19:23,344 | INFO     | transexitcode: 0
[2025-11-27 19:20:21] 2025-11-27 18:19:23,344 | INFO     | exeerrorcode: 0
[2025-11-27 19:20:21] 2025-11-27 18:19:23,344 | INFO     | exeerrordiag: 
[2025-11-27 19:20:21] 2025-11-27 18:19:23,344 | INFO     | exitcode: 0
[2025-11-27 19:20:21] 2025-11-27 18:19:23,344 | INFO     | exitmsg: OK
[2025-11-27 19:20:21] 2025-11-27 18:19:23,344 | INFO     | cpuconsumptiontime: 49636 s
[2025-11-27 19:20:21] 2025-11-27 18:19:23,344 | INFO     | nevents: 400
[2025-11-27 19:20:21] 2025-11-27 18:19:23,344 | INFO     | neventsw: 0
[2025-11-27 19:20:21] 2025-11-27 18:19:23,345 | INFO     | pid: 16221
[2025-11-27 19:20:21] 2025-11-27 18:19:23,345 | INFO     | pgrp: 16221
[2025-11-27 19:20:21] 2025-11-27 18:19:23,345 | INFO     | corecount: 12
[2025-11-27 19:20:21] 2025-11-27 18:19:23,345 | INFO     | event service: False
[2025-11-27 19:20:21] 2025-11-27 18:19:23,345 | INFO     | sizes: {0: 2283945, 1: 2284207, 10: 2284235, 5641: 2310839, 5642: 2319893, 5644: 2320031}
[2025-11-27 19:20:21] 2025-11-27 18:19:23,345 | INFO     | --------------------------------------------------
[2025-11-27 19:20:21] 2025-11-27 18:19:23,345 | INFO     | 
[2025-11-27 19:20:21] 2025-11-27 18:19:23,345 | INFO     | executing command: ls -lF /var/lib/boinc/slots/0
[2025-11-27 19:20:21] 2025-11-27 18:19:23,352 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 19:20:21] 2025-11-27 18:19:23,352 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 19:20:21] 2025-11-27 18:19:23,352 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 19:20:21] 2025-11-27 18:19:23,352 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 19:20:21] 2025-11-27 18:19:23,352 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 19:20:21] 2025-11-27 18:19:23,352 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 19:20:21] 2025-11-27 18:19:23,352 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 19:20:21] 2025-11-27 18:19:23,352 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 19:20:21] 2025-11-27 18:19:23,352 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 19:20:21] 2025-11-27 18:19:23,352 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 19:20:21] 2025-11-27 18:19:23,352 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 19:20:21] 2025-11-27 18:19:23,352 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 19:20:21] 2025-11-27 18:19:23,353 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 19:20:21] 2025-11-27 18:19:23,353 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 19:20:21] 2025-11-27 18:19:23,353 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 19:20:21] 2025-11-27 18:19:23,353 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 19:20:21] 2025-11-27 18:19:23,353 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 19:20:21] 2025-11-27 18:19:23,353 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 19:20:21] 2025-11-27 18:19:23,353 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 19:20:21] 2025-11-27 18:19:23,353 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 19:20:21] 2025-11-27 18:19:23,353 | INFO     | job 6894239143 has completed (purged errors)
[2025-11-27 19:20:21] 2025-11-27 18:19:23,353 | INFO     | overall cleanup function is called
[2025-11-27 19:20:21] 2025-11-27 18:19:24,359 | INFO     | --- collectZombieJob: --- 10, [16221]
[2025-11-27 19:20:21] 2025-11-27 18:19:24,359 | INFO     | zombie collector waiting for pid 16221
[2025-11-27 19:20:21] 2025-11-27 18:19:24,359 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 19:20:21] 2025-11-27 18:19:24,359 | INFO     | collected zombie processes
[2025-11-27 19:20:21] 2025-11-27 18:19:24,359 | INFO     | will attempt to kill all subprocesses of pid=16221
[2025-11-27 19:20:21] 2025-11-27 18:19:24,388 | INFO     | process IDs to be killed: [16221] (in reverse order)
[2025-11-27 19:20:21] 2025-11-27 18:19:24,404 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 19:20:21] 2025-11-27 18:19:24,404 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 19:20:21] 2025-11-27 18:19:24,405 | INFO     | did not find any defunct processes belonging to 16221
[2025-11-27 19:20:21] 2025-11-27 18:19:24,407 | INFO     | did not find any defunct processes belonging to 16221
[2025-11-27 19:20:21] 2025-11-27 18:19:24,407 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 19:20:21] 2025-11-27 18:19:24,407 | INFO     | ready for new job
[2025-11-27 19:20:21] 2025-11-27 18:19:24,407 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 19:20:21] 2025-11-27 18:19:24,408 | INFO     | ***************************************
[2025-11-27 19:20:21] 2025-11-27 18:19:24,408 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 19:20:21] 2025-11-27 18:19:24,408 | INFO     | ***************************************
[2025-11-27 19:20:21] 2025-11-27 18:19:24,408 | INFO     | 
[2025-11-27 19:20:21] 2025-11-27 18:19:24,408 | INFO     | architecture information:
[2025-11-27 19:20:21] 2025-11-27 18:19:24,409 | INFO     | executing command: cat /etc/os-release
[2025-11-27 19:20:21] 2025-11-27 18:19:24,415 | INFO     | cat /etc/os-release:
[2025-11-27 19:20:21] NAME="CentOS Linux"
[2025-11-27 19:20:21] VERSION="7 (Core)"
[2025-11-27 19:20:21] ID="centos"
[2025-11-27 19:20:21] ID_LIKE="rhel fedora"
[2025-11-27 19:20:21] VERSION_ID="7"
[2025-11-27 19:20:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 19:20:21] ANSI_COLOR="0;31"
[2025-11-27 19:20:21] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 19:20:21] HOME_URL="https://www.centos.org/"
[2025-11-27 19:20:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 19:20:21] 
[2025-11-27 19:20:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 19:20:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 19:20:21] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 19:20:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 19:20:21] 
[2025-11-27 19:20:21] 2025-11-27 18:19:24,415 | INFO     | ***************************************
[2025-11-27 19:20:21] 2025-11-27 18:19:24,917 | INFO     | executing command: df -mP /var/lib/boinc/slots/0
[2025-11-27 19:20:21] 2025-11-27 18:19:24,925 | INFO     | sufficient remaining disk space (119997988864 B)
[2025-11-27 19:20:21] 2025-11-27 18:19:24,925 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 19:20:21] 2025-11-27 18:19:24,925 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 19:20:21] 2025-11-27 18:19:24,925 | INFO     | update_server=False
[2025-11-27 19:20:21] 2025-11-27 18:19:24,925 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 19:20:21] 2025-11-27 18:19:24,925 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 19:20:21] 2025-11-27 18:19:25,107 | INFO     | all payload control threads have been joined
[2025-11-27 19:20:21] 2025-11-27 18:19:25,624 | INFO     | all data control threads have been joined
[2025-11-27 19:20:21] 2025-11-27 18:19:25,722 | INFO     | all job control threads have been joined
[2025-11-27 19:20:21] 2025-11-27 18:19:25,930 | INFO     | [job] retrieve thread has finished
[2025-11-27 19:20:21] 2025-11-27 18:19:25,931 | INFO     | [job] queue monitor thread has finished
[2025-11-27 19:20:21] 2025-11-27 18:19:26,112 | INFO     | [payload] control thread has finished
[2025-11-27 19:20:21] 2025-11-27 18:19:26,369 | INFO     | [payload] validate_post thread has finished
[2025-11-27 19:20:21] 2025-11-27 18:19:26,379 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 19:20:21] 2025-11-27 18:19:26,610 | INFO     | [job] validate thread has finished
[2025-11-27 19:20:21] 2025-11-27 18:19:26,612 | INFO     | [data] copytool_in thread has finished
[2025-11-27 19:20:21] 2025-11-27 18:19:26,628 | INFO     | [data] control thread has finished
[2025-11-27 19:20:21] 2025-11-27 18:19:26,727 | INFO     | [job] control thread has finished
[2025-11-27 19:20:21] 2025-11-27 18:19:26,788 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 19:20:21] 2025-11-27 18:19:26,895 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 19:20:21] 2025-11-27 18:19:27,047 | WARNING  | process 16221 can no longer be monitored (due to stat problems) - aborting
[2025-11-27 19:20:21] 2025-11-27 18:19:27,063 | INFO     | using path: /var/lib/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 19:20:21] 2025-11-27 18:19:27,087 | INFO     | number of running child processes to parent process 16221: 1
[2025-11-27 19:20:21] 2025-11-27 18:19:27,087 | INFO     | maximum number of monitored processes: 9
[2025-11-27 19:20:21] 2025-11-27 18:19:27,087 | INFO     | aborting job monitoring since job object (job id=6894239143) has expired
[2025-11-27 19:20:21] 2025-11-27 18:19:27,087 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 19:20:21] 2025-11-27 18:19:27,087 | INFO     | will abort loop
[2025-11-27 19:20:21] 2025-11-27 18:19:27,117 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 19:20:21] 2025-11-27 18:19:27,262 | INFO     | [payload] failed_post thread has finished
[2025-11-27 19:20:21] 2025-11-27 18:19:27,298 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 19:20:21] 2025-11-27 18:19:28,092 | INFO     | [job] job monitor thread has finished
[2025-11-27 19:20:21] 2025-11-27 18:19:28,384 | INFO     | [data] copytool_out thread has finished
[2025-11-27 19:20:21] 2025-11-27 18:19:30,900 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 19:20:21] 2025-11-27 18:19:35,528 | INFO     | job.realtimelogging is not enabled
[2025-11-27 19:20:21] 2025-11-27 18:19:36,534 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 19:20:21] 2025-11-27 18:19:54,604 | INFO     | PID=9684 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-27 19:20:21] 2025-11-27 18:19:54,604 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 19:20:21] 2025-11-27 18:19:54,604 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 19:20:21] 2025-11-27 18:19:54,604 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 19:20:21] 2025-11-27 18:20:15,508 | INFO     | [monitor] cgroup control has ended
[2025-11-27 19:20:21] 2025-11-27 18:20:15,924 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140295960311616)>', '<ExcThread(monitor, started 140295291262720)>']
[2025-11-27 19:20:21] 2025-11-27 18:20:16,702 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 19:20:21] 2025-11-27 18:20:16,702 | INFO     | [monitor] control thread has ended
[2025-11-27 19:20:21] 2025-11-27 18:20:20,949 | INFO     | all workflow threads have been joined
[2025-11-27 19:20:21] 2025-11-27 18:20:20,949 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 19:20:21] 2025-11-27 18:20:20,949 | INFO     | traces error code: 0
[2025-11-27 19:20:21] 2025-11-27 18:20:20,949 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 19:20:21] 2025-11-27 18:20:20,983 [wrapper] ==== pilot stdout END ====
[2025-11-27 19:20:21] 2025-11-27 18:20:20,984 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 19:20:21] 2025-11-27 18:20:20,985 [wrapper] pilotpid: 9684
[2025-11-27 19:20:21] 2025-11-27 18:20:20,986 [wrapper] Pilot exit status: 0
[2025-11-27 19:20:21] 2025-11-27 18:20:20,991 [wrapper] pandaids: 6894239143
[2025-11-27 19:20:21] 2025-11-27 18:20:21,001 [wrapper] cleanup supervisor_pilot 28943 9685
[2025-11-27 19:20:21] 2025-11-27 18:20:21,002 [wrapper] Test setup, not cleaning
[2025-11-27 19:20:21] 2025-11-27 18:20:21,003 [wrapper] apfmon messages muted
[2025-11-27 19:20:21] 2025-11-27 18:20:21,004 [wrapper] ==== wrapper stdout END ====
[2025-11-27 19:20:21] 2025-11-27 18:20:21,005 [wrapper] ==== wrapper stderr END ====
[2025-11-27 19:20:21]  *** Error codes and diagnostics ***
[2025-11-27 19:20:21]     "exeErrorCode": 0,
[2025-11-27 19:20:21]     "exeErrorDiag": "",
[2025-11-27 19:20:21]     "pilotErrorCode": 0,
[2025-11-27 19:20:21]     "pilotErrorDiag": "",
[2025-11-27 19:20:21]  *** Listing of results directory ***
[2025-11-27 19:20:21] total 625188
[2025-11-27 19:20:21] -rw-r--r-- 1 boinc boinc    576529 Nov 25 06:12 pilot3.tar.gz
[2025-11-27 19:20:21] -rw-r--r-- 1 boinc boinc      5112 Nov 25 06:33 queuedata.json
[2025-11-27 19:20:21] -rwx------ 1 boinc boinc     36292 Nov 25 06:33 runpilot2-wrapper.sh
[2025-11-27 19:20:21] -rw-r--r-- 1 boinc boinc       100 Nov 27 17:45 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 19:20:21] -rwxr-xr-x 1 boinc boinc      7986 Nov 27 17:45 run_atlas
[2025-11-27 19:20:21] -rw-r--r-- 1 boinc boinc       105 Nov 27 17:45 job.xml
[2025-11-27 19:20:21] -rw-r--r-- 2 boinc boinc     15847 Nov 27 17:45 start_atlas.sh
[2025-11-27 19:20:21] drwxrwx--x 2 boinc boinc      4096 Nov 27 17:45 shared
[2025-11-27 19:20:21] -rw-r--r-- 2 boinc boinc    589945 Nov 27 17:45 input.tar.gz
[2025-11-27 19:20:21] -rw-r--r-- 1 boinc boinc      7170 Nov 27 17:45 init_data.xml
[2025-11-27 19:20:21] -rw-r--r-- 2 boinc boinc 296317559 Nov 27 17:45 EVNT.47523935._000001.pool.root.1
[2025-11-27 19:20:21] -rw-r--r-- 1 boinc boinc         0 Nov 27 17:45 boinc_lockfile
[2025-11-27 19:20:21] -rw-r--r-- 1 boinc boinc      2609 Nov 27 17:45 pandaJob.out
[2025-11-27 19:20:21] -rw------- 1 boinc boinc    991572 Nov 27 17:45 agis_schedconf.cvmfs.json
[2025-11-27 19:20:21] -rw------- 1 boinc boinc   1516240 Nov 27 17:45 agis_ddmendpoints.agis.ALL.json
[2025-11-27 19:20:21] drwx------ 5 boinc boinc      4096 Nov 27 17:45 pilot3
[2025-11-27 19:20:21] -rw------- 1 boinc boinc 337519781 Nov 27 19:18 HITS.47523939._000017.pool.root.1
[2025-11-27 19:20:21] -rw------- 1 boinc boinc      1016 Nov 27 19:19 memory_monitor_summary.json
[2025-11-27 19:20:21] -rw------- 1 boinc boinc    403013 Nov 27 19:19 log.47523939._000017.job.log.tgz.1
[2025-11-27 19:20:21] -rw------- 1 boinc boinc      7723 Nov 27 19:19 heartbeat.json
[2025-11-27 19:20:21] -rw-r--r-- 1 boinc boinc       530 Nov 27 19:19 boinc_task_state.xml
[2025-11-27 19:20:21] -rw------- 1 boinc boinc        95 Nov 27 19:19 pilot_heartbeat.json
[2025-11-27 19:20:21] -rw-r--r-- 1 boinc boinc      8192 Nov 27 19:20 boinc_mmap_file
[2025-11-27 19:20:21] -rw-r--r-- 1 boinc boinc        27 Nov 27 19:20 wrapper_checkpoint.txt
[2025-11-27 19:20:21] -rw------- 1 boinc boinc      5335 Nov 27 19:20 pilotlog.txt
[2025-11-27 19:20:21] -rw------- 1 boinc boinc    813091 Nov 27 19:20 log.47523939._000017.job.log.1
[2025-11-27 19:20:21] -rw-r--r-- 1 boinc boinc       620 Nov 27 19:20 runtime_log
[2025-11-27 19:20:21] -rw------- 1 boinc boinc   1239040 Nov 27 19:20 result.tar.gz
[2025-11-27 19:20:21] -rw------- 1 boinc boinc       357 Nov 27 19:20 output.list
[2025-11-27 19:20:21] -rw-r--r-- 1 boinc boinc      8766 Nov 27 19:20 runtime_log.err
[2025-11-27 19:20:21] -rw------- 1 boinc boinc       640 Nov 27 19:20 2SGNDmkr0h8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm5AMKDmyjIsNm.diag
[2025-11-27 19:20:21] -rw-r--r-- 1 boinc boinc     22106 Nov 27 19:20 stderr.txt
[2025-11-27 19:20:21] HITS file was successfully produced:
[2025-11-27 19:20:21] -rw------- 1 boinc boinc 337519781 Nov 27 19:18 shared/HITS.pool.root.1
[2025-11-27 19:20:21]  *** Contents of shared directory: ***
[2025-11-27 19:20:21] total 620804
[2025-11-27 19:20:21] -rw-r--r-- 2 boinc boinc     15847 Nov 27 17:45 start_atlas.sh
[2025-11-27 19:20:21] -rw-r--r-- 2 boinc boinc    589945 Nov 27 17:45 input.tar.gz
[2025-11-27 19:20:21] -rw-r--r-- 2 boinc boinc 296317559 Nov 27 17:45 ATLAS.root_0
[2025-11-27 19:20:21] -rw------- 1 boinc boinc 337519781 Nov 27 19:18 HITS.pool.root.1
[2025-11-27 19:20:21] -rw------- 1 boinc boinc   1239040 Nov 27 19:20 result.tar.gz
19:20:23 (5859): run_atlas exited; CPU time 49663.824184
19:20:23 (5859): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN