Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
06:57:38 (4724): wrapper (7.7.26015): starting
06:57:38 (4724): wrapper: running run_atlas (--nthreads 8)
[2025-11-28 06:57:38] Arguments: --nthreads 8
[2025-11-28 06:57:38] Threads: 8
[2025-11-28 06:57:38] Checking for CVMFS
[2025-11-28 06:57:40] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-28 06:57:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-28 06:57:40] Running cvmfs_config stat atlas.cern.ch
[2025-11-28 06:57:41] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-28 06:57:41] 2.11.2.0 31392 287710 136064 153399 0 85 17092339 25165825 1288 130560 12 141020633 99.877 79327657 2828 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-28 06:57:41] CVMFS is ok
[2025-11-28 06:57:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-28 06:57:41] Checking for apptainer binary...
[2025-11-28 06:57:41] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-28 06:57:41] Running /usr/bin/apptainer --version
[2025-11-28 06:57:41] apptainer version 1.3.2-1.el7
[2025-11-28 06:57:42] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-28 06:57:53] cg-vwn267.simple-grid.lan
[2025-11-28 06:57:53] apptainer works
[2025-11-28 06:57:53] Set ATHENA_PROC_NUMBER=8
[2025-11-28 06:57:53] Set ATHENA_CORE_NUMBER=8
[2025-11-28 06:57:53] Starting ATLAS job with PandaID=6896765980
[2025-11-28 06:57:53] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-29 06:05:38]  *** The last 200 lines of the pilot log: ***
[2025-11-29 06:05:38] 2025-11-29 05:04:50,608 | INFO     | time since job start (82978s) is within the limit (172800.0s)
[2025-11-29 06:05:38] 2025-11-29 05:04:50,773 | INFO     | monitor loop #5604: job 0:6896765980 is in state 'finished'
[2025-11-29 06:05:38] 2025-11-29 05:04:50,773 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-29 06:05:38] 2025-11-29 05:04:52,620 | INFO     | time since job start (82980s) is within the limit (172800.0s)
[2025-11-29 06:05:38] 2025-11-29 05:04:53,280 | INFO     | monitor loop #5605: job 0:6896765980 is in state 'finished'
[2025-11-29 06:05:38] 2025-11-29 05:04:53,280 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-29 06:05:38] 2025-11-29 05:04:53,843 | INFO     | PID=8523 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-29 06:05:38] 2025-11-29 05:04:53,843 | INFO     | .. there are 9 such processes running
[2025-11-29 06:05:38] 2025-11-29 05:04:54,849 | INFO     | time since job start (82982s) is within the limit (172800.0s)
[2025-11-29 06:05:38] 2025-11-29 05:04:55,790 | INFO     | monitor loop #5606: job 0:6896765980 is in state 'finished'
[2025-11-29 06:05:38] 2025-11-29 05:04:55,790 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-29 06:05:38] 2025-11-29 05:04:56,857 | INFO     | time since job start (82984s) is within the limit (172800.0s)
[2025-11-29 06:05:38] 2025-11-29 05:04:58,295 | INFO     | monitor loop #5607: job 0:6896765980 is in state 'finished'
[2025-11-29 06:05:38] 2025-11-29 05:04:58,295 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-29 06:05:38] 2025-11-29 05:04:58,866 | INFO     | time since job start (82986s) is within the limit (172800.0s)
[2025-11-29 06:05:38] 2025-11-29 05:05:00,419 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-29 06:05:38] 2025-11-29 05:05:00,420 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-29 06:05:38] 2025-11-29 05:05:00,421 | INFO     | using path: /var/lib/boinc/slots/7/PanDA_Pilot-6896765980/memory_monitor_summary.json (trf name=prmon)
[2025-11-29 06:05:38] 2025-11-29 05:05:00,422 | INFO     | extracted standard info from prmon json
[2025-11-29 06:05:38] 2025-11-29 05:05:00,422 | INFO     | extracted standard memory fields from prmon json
[2025-11-29 06:05:38] 2025-11-29 05:05:00,423 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-29 06:05:38] 2025-11-29 05:05:00,464 | INFO     | fitting pss+swap vs Time
[2025-11-29 06:05:38] 2025-11-29 05:05:00,466 | INFO     | sum of square deviations: 764616390622.3811
[2025-11-29 06:05:38] 2025-11-29 05:05:00,577 | INFO     | sum of deviations: 2667516319487.507
[2025-11-29 06:05:38] 2025-11-29 05:05:00,577 | INFO     | mean x: 1764351398.084382
[2025-11-29 06:05:38] 2025-11-29 05:05:00,577 | INFO     | mean y: 2846558.118430792
[2025-11-29 06:05:38] 2025-11-29 05:05:00,577 | INFO     | intersect: -6152444128.064415
[2025-11-29 06:05:38] 2025-11-29 05:05:00,579 | INFO     | chi2: 20.115714949315414
[2025-11-29 06:05:38] 2025-11-29 05:05:00,581 | INFO     | sum of square deviations: 756158753273.979
[2025-11-29 06:05:38] 2025-11-29 05:05:00,655 | INFO     | sum of deviations: 3109169999324.7764
[2025-11-29 06:05:38] 2025-11-29 05:05:00,655 | INFO     | mean x: 1764351245.5884101
[2025-11-29 06:05:38] 2025-11-29 05:05:00,656 | INFO     | mean y: 2854520.2161961365
[2025-11-29 06:05:38] 2025-11-29 05:05:00,656 | INFO     | intersect: -7251796619.247851
[2025-11-29 06:05:38] 2025-11-29 05:05:00,657 | INFO     | chi2: 17.00581893167531
[2025-11-29 06:05:38] 2025-11-29 05:05:00,658 | INFO     | current chi2=17.00581893167531 (change=15.460032245813569 %)
[2025-11-29 06:05:38] 2025-11-29 05:05:00,658 | INFO     | right removable region: 1345
[2025-11-29 06:05:38] 2025-11-29 05:05:00,660 | INFO     | sum of square deviations: 756157859623.9791
[2025-11-29 06:05:38] 2025-11-29 05:05:00,719 | INFO     | sum of deviations: 2106026252180.573
[2025-11-29 06:05:38] 2025-11-29 05:05:00,720 | INFO     | mean x: 1764351550.5884101
[2025-11-29 06:05:38] 2025-11-29 05:05:00,720 | INFO     | mean y: 2856680.8187221396
[2025-11-29 06:05:38] 2025-11-29 05:05:00,720 | INFO     | intersect: -4911157815.390395
[2025-11-29 06:05:38] 2025-11-29 05:05:00,726 | INFO     | chi2: 15.525638691394677
[2025-11-29 06:05:38] 2025-11-29 05:05:00,726 | INFO     | current chi2=15.525638691394677 (change=22.81836002093949 %)
[2025-11-29 06:05:38] 2025-11-29 05:05:00,726 | INFO     | left removable region: 10
[2025-11-29 06:05:38] 2025-11-29 05:05:00,728 | INFO     | sum of square deviations: 737770208863.3418
[2025-11-29 06:05:38] 2025-11-29 05:05:00,805 | INFO     | sum of deviations: 2182527397188.2625
[2025-11-29 06:05:38] 2025-11-29 05:05:00,806 | INFO     | mean x: 1764351520.0973783
[2025-11-29 06:05:38] 2025-11-29 05:05:00,806 | INFO     | mean y: 2875103.390262172
[2025-11-29 06:05:38] 2025-11-29 05:05:00,806 | INFO     | intersect: -5216562445.892192
[2025-11-29 06:05:38] 2025-11-29 05:05:00,807 | INFO     | chi2: 8.50041435476287
[2025-11-29 06:05:38] 2025-11-29 05:05:00,808 | INFO     | current memory leak: 2.96 B/s (using 1335 data points, chi2=8.50)
[2025-11-29 06:05:38] 2025-11-29 05:05:00,811 | INFO     | could have reported an average CPU frequency of 1999 MHz (46 samples)
[2025-11-29 06:05:38] 2025-11-29 05:05:00,812 | INFO     | ..............................
[2025-11-29 06:05:38] 2025-11-29 05:05:00,812 | INFO     | . Timing measurements:
[2025-11-29 06:05:38] 2025-11-29 05:05:00,812 | INFO     | . get job = 0 s
[2025-11-29 06:05:38] 2025-11-29 05:05:00,812 | INFO     | . initial setup = 20 s
[2025-11-29 06:05:38] 2025-11-29 05:05:00,812 | INFO     | . payload setup = 149 s
[2025-11-29 06:05:38] 2025-11-29 05:05:00,812 | INFO     | . stage-in = 0 s
[2025-11-29 06:05:38] 2025-11-29 05:05:00,812 | INFO     | . payload execution = 82529 s
[2025-11-29 06:05:38] 2025-11-29 05:05:00,812 | INFO     | . stage-out = 17 s
[2025-11-29 06:05:38] 2025-11-29 05:05:00,812 | INFO     | . log creation = 2 s
[2025-11-29 06:05:38] 2025-11-29 05:05:00,813 | INFO     | ..............................
[2025-11-29 06:05:38] 2025-11-29 05:05:00,881 | INFO     | time since job start (82988s) is within the limit (172800.0s)
[2025-11-29 06:05:38] 2025-11-29 05:05:00,934 | INFO     | 
[2025-11-29 06:05:38] 2025-11-29 05:05:00,934 | INFO     | job summary report
[2025-11-29 06:05:38] 2025-11-29 05:05:00,934 | INFO     | --------------------------------------------------
[2025-11-29 06:05:38] 2025-11-29 05:05:00,934 | INFO     | PanDA job id: 6896765980
[2025-11-29 06:05:38] 2025-11-29 05:05:00,934 | INFO     | task id: 47556185
[2025-11-29 06:05:38] 2025-11-29 05:05:00,934 | INFO     | errors: (none)
[2025-11-29 06:05:38] 2025-11-29 05:05:00,935 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-29 06:05:38] 2025-11-29 05:05:00,935 | INFO     | pilot state: finished 
[2025-11-29 06:05:38] 2025-11-29 05:05:00,935 | INFO     | transexitcode: 0
[2025-11-29 06:05:38] 2025-11-29 05:05:00,935 | INFO     | exeerrorcode: 0
[2025-11-29 06:05:38] 2025-11-29 05:05:00,935 | INFO     | exeerrordiag: 
[2025-11-29 06:05:38] 2025-11-29 05:05:00,935 | INFO     | exitcode: 0
[2025-11-29 06:05:38] 2025-11-29 05:05:00,935 | INFO     | exitmsg: OK
[2025-11-29 06:05:38] 2025-11-29 05:05:00,935 | INFO     | cpuconsumptiontime: 311670 s
[2025-11-29 06:05:38] 2025-11-29 05:05:00,935 | INFO     | nevents: 1000
[2025-11-29 06:05:38] 2025-11-29 05:05:00,935 | INFO     | neventsw: 0
[2025-11-29 06:05:38] 2025-11-29 05:05:00,935 | INFO     | pid: 15128
[2025-11-29 06:05:38] 2025-11-29 05:05:00,935 | INFO     | pgrp: 15128
[2025-11-29 06:05:38] 2025-11-29 05:05:00,935 | INFO     | corecount: 8
[2025-11-29 06:05:38] 2025-11-29 05:05:00,936 | INFO     | event service: False
[2025-11-29 06:05:38] 2025-11-29 05:05:00,936 | INFO     | sizes: {0: 2284141, 1: 2284340, 12: 2284340, 23: 2284368, 34: 2284396, 44: 2284424, 55: 2284580, 66: 2284608, 76: 2284636, 87: 2284692, 92: 2284982, 98: 2285290, 8
[2025-11-29 06:05:38] 2025-11-29 05:05:00,936 | INFO     | --------------------------------------------------
[2025-11-29 06:05:38] 2025-11-29 05:05:00,936 | INFO     | 
[2025-11-29 06:05:38] 2025-11-29 05:05:00,936 | INFO     | executing command: ls -lF /var/lib/boinc/slots/7
[2025-11-29 06:05:38] 2025-11-29 05:05:01,169 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-29 06:05:38] 2025-11-29 05:05:01,170 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-29 06:05:38] 2025-11-29 05:05:01,170 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-29 06:05:38] 2025-11-29 05:05:01,170 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-29 06:05:38] 2025-11-29 05:05:01,170 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-29 06:05:38] 2025-11-29 05:05:01,170 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-29 06:05:38] 2025-11-29 05:05:01,170 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-29 06:05:38] 2025-11-29 05:05:01,170 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-29 06:05:38] 2025-11-29 05:05:01,170 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-29 06:05:38] 2025-11-29 05:05:01,170 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-29 06:05:38] 2025-11-29 05:05:01,170 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-29 06:05:38] 2025-11-29 05:05:01,170 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-29 06:05:38] 2025-11-29 05:05:01,171 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-29 06:05:38] 2025-11-29 05:05:01,171 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-29 06:05:38] 2025-11-29 05:05:01,171 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-29 06:05:38] 2025-11-29 05:05:01,171 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-29 06:05:38] 2025-11-29 05:05:01,171 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-29 06:05:38] 2025-11-29 05:05:01,171 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-29 06:05:38] 2025-11-29 05:05:01,171 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-29 06:05:38] 2025-11-29 05:05:01,171 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-29 06:05:38] 2025-11-29 05:05:01,171 | INFO     | job 6896765980 has completed (purged errors)
[2025-11-29 06:05:38] 2025-11-29 05:05:01,171 | INFO     | overall cleanup function is called
[2025-11-29 06:05:38] 2025-11-29 05:05:02,188 | INFO     | --- collectZombieJob: --- 10, [15128]
[2025-11-29 06:05:38] 2025-11-29 05:05:02,188 | INFO     | zombie collector waiting for pid 15128
[2025-11-29 06:05:38] 2025-11-29 05:05:02,188 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-29 06:05:38] 2025-11-29 05:05:02,188 | INFO     | collected zombie processes
[2025-11-29 06:05:38] 2025-11-29 05:05:02,188 | INFO     | will attempt to kill all subprocesses of pid=15128
[2025-11-29 06:05:38] 2025-11-29 05:05:02,306 | INFO     | process IDs to be killed: [15128] (in reverse order)
[2025-11-29 06:05:38] 2025-11-29 05:05:03,281 | WARNING  | found no corresponding commands to process id(s)
[2025-11-29 06:05:38] 2025-11-29 05:05:03,281 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-29 06:05:38] 2025-11-29 05:05:03,284 | INFO     | did not find any defunct processes belonging to 15128
[2025-11-29 06:05:38] 2025-11-29 05:05:03,287 | INFO     | did not find any defunct processes belonging to 15128
[2025-11-29 06:05:38] 2025-11-29 05:05:03,345 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-29 06:05:38] 2025-11-29 05:05:03,345 | INFO     | ready for new job
[2025-11-29 06:05:38] 2025-11-29 05:05:03,346 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-29 06:05:38] 2025-11-29 05:05:03,351 | INFO     | ***************************************
[2025-11-29 06:05:38] 2025-11-29 05:05:03,351 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-29 06:05:38] 2025-11-29 05:05:03,351 | INFO     | ***************************************
[2025-11-29 06:05:38] 2025-11-29 05:05:03,351 | INFO     | 
[2025-11-29 06:05:38] 2025-11-29 05:05:03,352 | INFO     | pilot is running in a VM
[2025-11-29 06:05:38] 2025-11-29 05:05:03,352 | INFO     | architecture information:
[2025-11-29 06:05:38] 2025-11-29 05:05:03,362 | INFO     | executing command: cat /etc/os-release
[2025-11-29 06:05:38] 2025-11-29 05:05:03,628 | INFO     | cat /etc/os-release:
[2025-11-29 06:05:38] NAME="CentOS Linux"
[2025-11-29 06:05:38] VERSION="7 (Core)"
[2025-11-29 06:05:38] ID="centos"
[2025-11-29 06:05:38] ID_LIKE="rhel fedora"
[2025-11-29 06:05:38] VERSION_ID="7"
[2025-11-29 06:05:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-29 06:05:38] ANSI_COLOR="0;31"
[2025-11-29 06:05:38] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-29 06:05:38] HOME_URL="https://www.centos.org/"
[2025-11-29 06:05:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-29 06:05:38] 
[2025-11-29 06:05:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-29 06:05:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-29 06:05:38] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-29 06:05:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-29 06:05:38] 
[2025-11-29 06:05:38] 2025-11-29 05:05:03,629 | INFO     | ***************************************
[2025-11-29 06:05:38] 2025-11-29 05:05:04,131 | INFO     | executing command: df -mP /var/lib/boinc/slots/7
[2025-11-29 06:05:38] 2025-11-29 05:05:04,408 | INFO     | sufficient remaining disk space (488328134656 B)
[2025-11-29 06:05:38] 2025-11-29 05:05:04,408 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-29 06:05:38] 2025-11-29 05:05:04,408 | INFO     | current server update state: UPDATING_FINAL
[2025-11-29 06:05:38] 2025-11-29 05:05:04,409 | INFO     | update_server=False
[2025-11-29 06:05:38] 2025-11-29 05:05:04,409 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-29 06:05:38] 2025-11-29 05:05:04,409 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-29 06:05:38] 2025-11-29 05:05:04,409 | INFO     | aborting loop
[2025-11-29 06:05:38] 2025-11-29 05:05:04,627 | INFO     | all payload control threads have been joined
[2025-11-29 06:05:38] 2025-11-29 05:05:04,792 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-29 06:05:38] 2025-11-29 05:05:05,009 | INFO     | all data control threads have been joined
[2025-11-29 06:05:38] 2025-11-29 05:05:05,415 | INFO     | [job] retrieve thread has finished
[2025-11-29 06:05:38] 2025-11-29 05:05:05,419 | INFO     | [job] job monitor thread has finished
[2025-11-29 06:05:38] 2025-11-29 05:05:05,543 | INFO     | [job] validate thread has finished
[2025-11-29 06:05:38] 2025-11-29 05:05:05,562 | INFO     | [payload] validate_pre thread has finished
[2025-11-29 06:05:38] 2025-11-29 05:05:05,571 | INFO     | [payload] validate_post thread has finished
[2025-11-29 06:05:38] 2025-11-29 05:05:05,633 | INFO     | [payload] control thread has finished
[2025-11-29 06:05:38] 2025-11-29 05:05:05,877 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-29 06:05:38] 2025-11-29 05:05:05,952 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-29 06:05:38] 2025-11-29 05:05:05,992 | INFO     | [payload] failed_post thread has finished
[2025-11-29 06:05:38] 2025-11-29 05:05:06,008 | INFO     | [job] create_data_payload thread has finished
[2025-11-29 06:05:38] 2025-11-29 05:05:06,015 | INFO     | [data] control thread has finished
[2025-11-29 06:05:38] 2025-11-29 05:05:06,036 | INFO     | all job control threads have been joined
[2025-11-29 06:05:38] 2025-11-29 05:05:06,688 | INFO     | [payload] execute_payloads thread has finished
[2025-11-29 06:05:38] 2025-11-29 05:05:06,895 | INFO     | [data] copytool_in thread has finished
[2025-11-29 06:05:38] 2025-11-29 05:05:06,901 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-29 06:05:38] 2025-11-29 05:05:06,958 | INFO     | [job] queue monitor thread has finished
[2025-11-29 06:05:38] 2025-11-29 05:05:07,042 | INFO     | [job] control thread has finished
[2025-11-29 06:05:38] 2025-11-29 05:05:07,884 | INFO     | [data] copytool_out thread has finished
[2025-11-29 06:05:38] 2025-11-29 05:05:08,801 | INFO     | [data] queue_monitor thread has finished
[2025-11-29 06:05:38] 2025-11-29 05:05:16,421 | INFO     | [monitor] cgroup control has ended
[2025-11-29 06:05:38] 2025-11-29 05:05:17,907 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140551888131904)>', '<ExcThread(monitor, started 140551278008064)>']
[2025-11-29 06:05:38] 2025-11-29 05:05:22,933 | INFO     | all workflow threads have been joined
[2025-11-29 06:05:38] 2025-11-29 05:05:22,933 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-29 06:05:38] 2025-11-29 05:05:22,933 | INFO     | traces error code: 0
[2025-11-29 06:05:38] 2025-11-29 05:05:22,934 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-29 06:05:38] 2025-11-29 05:05:34,071 | INFO     | PID=8523 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-29 06:05:38] 2025-11-29 05:05:34,071 | INFO     | .. there are 9 such processes running
[2025-11-29 06:05:38] 2025-11-29 05:05:34,074 | INFO     | found 0 job(s) in 20 queues
[2025-11-29 06:05:38] 2025-11-29 05:05:34,074 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-29 06:05:38] 2025-11-29 05:05:34,074 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-29 06:05:38] 2025-11-29 05:05:34,074 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-29 06:05:38] 2025-11-29 05:05:34,074 | INFO     | [monitor] control thread has ended
[2025-11-29 06:05:38] 2025-11-29 05:05:34,335 [wrapper] ==== pilot stdout END ====
[2025-11-29 06:05:38] 2025-11-29 05:05:34,404 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-29 06:05:38] 2025-11-29 05:05:34,501 [wrapper] pilotpid: 8523
[2025-11-29 06:05:38] 2025-11-29 05:05:34,600 [wrapper] Pilot exit status: 0
[2025-11-29 06:05:38] 2025-11-29 05:05:34,984 [wrapper] pandaids: 6896765980
[2025-11-29 06:05:38] 2025-11-29 05:05:36,083 [wrapper] cleanup supervisor_pilot  8723 8524
[2025-11-29 06:05:38] 2025-11-29 05:05:36,179 [wrapper] Test setup, not cleaning
[2025-11-29 06:05:38] 2025-11-29 05:05:36,236 [wrapper] apfmon messages muted
[2025-11-29 06:05:38] 2025-11-29 05:05:36,325 [wrapper] ==== wrapper stdout END ====
[2025-11-29 06:05:38] 2025-11-29 05:05:36,410 [wrapper] ==== wrapper stderr END ====
[2025-11-29 06:05:38]  *** Error codes and diagnostics ***
[2025-11-29 06:05:39]     "exeErrorCode": 0,
[2025-11-29 06:05:39]     "exeErrorDiag": "",
[2025-11-29 06:05:39]     "pilotErrorCode": 0,
[2025-11-29 06:05:39]     "pilotErrorDiag": "",
[2025-11-29 06:05:39]  *** Listing of results directory ***
[2025-11-29 06:05:39] total 1322008
[2025-11-29 06:05:39] -rw-r--r--. 1 boinc boinc      5112 Nov 25 10:38 queuedata.json
[2025-11-29 06:05:39] -rwx------. 1 boinc boinc     36292 Nov 25 10:39 runpilot2-wrapper.sh
[2025-11-29 06:05:39] -rw-r--r--. 1 boinc boinc    576529 Nov 25 10:39 pilot3.tar.gz
[2025-11-29 06:05:39] -rw-r--r--. 1 boinc boinc       100 Nov 28 06:57 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-29 06:05:39] -rwxr-xr-x. 1 boinc boinc      7986 Nov 28 06:57 run_atlas
[2025-11-29 06:05:39] -rw-r--r--. 1 boinc boinc       105 Nov 28 06:57 job.xml
[2025-11-29 06:05:39] -rw-r--r--. 2 boinc boinc 410238182 Nov 28 06:57 EVNT.47483658._004270.pool.root.1
[2025-11-29 06:05:39] -rw-r--r--. 2 boinc boinc     15847 Nov 28 06:57 start_atlas.sh
[2025-11-29 06:05:39] drwxrwx--x. 2 boinc boinc        68 Nov 28 06:57 shared
[2025-11-29 06:05:39] -rw-r--r--. 2 boinc boinc    590097 Nov 28 06:57 input.tar.gz
[2025-11-29 06:05:39] -rw-r--r--. 1 boinc boinc      6391 Nov 28 06:57 init_data.xml
[2025-11-29 06:05:39] -rw-r--r--. 1 boinc boinc         0 Nov 28 06:57 boinc_lockfile
[2025-11-29 06:05:39] -rw-r--r--. 1 boinc boinc      2784 Nov 28 06:57 pandaJob.out
[2025-11-29 06:05:39] -rw-------. 1 boinc boinc    991858 Nov 28 07:01 agis_schedconf.cvmfs.json
[2025-11-29 06:05:39] drwx------. 5 boinc boinc      4096 Nov 28 07:01 pilot3
[2025-11-29 06:05:39] -rw-r--r--. 1 boinc boinc       533 Nov 29 05:39 boinc_task_state.xml
[2025-11-29 06:05:39] -rw-------. 1 boinc boinc 912544638 Nov 29 06:01 HITS.47556185._000340.pool.root.1
[2025-11-29 06:05:39] -rw-------. 1 boinc boinc      1033 Nov 29 06:03 memory_monitor_summary.json
[2025-11-29 06:05:39] -rw-------. 1 boinc boinc   1516240 Nov 29 06:03 agis_ddmendpoints.agis.ALL.json
[2025-11-29 06:05:39] -rw-------. 1 boinc boinc   2451612 Nov 29 06:03 log.47556185._000340.job.log.tgz.1
[2025-11-29 06:05:39] -rw-------. 1 boinc boinc      7955 Nov 29 06:05 heartbeat.json
[2025-11-29 06:05:39] -rw-r--r--. 1 boinc boinc      8192 Nov 29 06:05 boinc_mmap_file
[2025-11-29 06:05:39] -rw-r--r--. 1 boinc boinc        29 Nov 29 06:05 wrapper_checkpoint.txt
[2025-11-29 06:05:39] -rw-------. 1 boinc boinc        95 Nov 29 06:05 pilot_heartbeat.json
[2025-11-29 06:05:39] -rw-------. 1 boinc boinc       819 Nov 29 06:05 pilotlog.txt
[2025-11-29 06:05:39] -rw-------. 1 boinc boinc  11074334 Nov 29 06:05 log.47556185._000340.job.log.1
[2025-11-29 06:05:39] -rw-------. 1 boinc boinc       353 Nov 29 06:05 output.list
[2025-11-29 06:05:39] -rw-r--r--. 1 boinc boinc       620 Nov 29 06:05 runtime_log
[2025-11-29 06:05:39] -rw-------. 1 boinc boinc  13547520 Nov 29 06:05 result.tar.gz
[2025-11-29 06:05:39] -rw-r--r--. 1 boinc boinc      8817 Nov 29 06:05 runtime_log.err
[2025-11-29 06:05:39] -rw-------. 1 boinc boinc       662 Nov 29 06:05 3OmKDmFh4h8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmWIMKDm7laMMo.diag
[2025-11-29 06:05:39] -rw-r--r--. 1 boinc boinc     21498 Nov 29 06:05 stderr.txt
[2025-11-29 06:05:39] HITS file was successfully produced:
[2025-11-29 06:05:39] -rw-------. 1 boinc boinc 912544638 Nov 29 06:01 shared/HITS.pool.root.1
[2025-11-29 06:05:39]  *** Contents of shared directory: ***
[2025-11-29 06:05:39] total 1305612
[2025-11-29 06:05:39] -rw-r--r--. 2 boinc boinc 410238182 Nov 28 06:57 ATLAS.root_0
[2025-11-29 06:05:39] -rw-r--r--. 2 boinc boinc     15847 Nov 28 06:57 start_atlas.sh
[2025-11-29 06:05:39] -rw-r--r--. 2 boinc boinc    590097 Nov 28 06:57 input.tar.gz
[2025-11-29 06:05:39] -rw-------. 1 boinc boinc 912544638 Nov 29 06:01 HITS.pool.root.1
[2025-11-29 06:05:39] -rw-------. 1 boinc boinc  13547520 Nov 29 06:05 result.tar.gz
06:05:40 (4724): run_atlas exited; CPU time 312239.118862
06:05:40 (4724): called boinc_finish(0)

</stderr_txt>
]]>

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