Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
19:58:10 (1678736): wrapper (7.7.26015): starting
19:58:10 (1678736): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 19:58:10] Arguments: --nthreads 8
[2025-11-26 19:58:10] Threads: 8
[2025-11-26 19:58:10] Checking for CVMFS
[2025-11-26 19:58:10] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 19:58:11] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 19:58:11] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 19:58:11] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 19:58:11] 2.13.2.0 29534 34475 274756 153341 2 574 26471974 39288832 10359 16776704 0 25843539 99.644 27431423 34096 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-26 19:58:11] CVMFS is ok
[2025-11-26 19:58:11] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 19:58:11] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 19:58:11] Further information can be found at the LHC@home message board.
[2025-11-26 19:58:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 19:58:11] Checking for apptainer binary...
[2025-11-26 19:58:11] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 19:58:11] Running /usr/bin/apptainer --version
[2025-11-26 19:58:12] apptainer version 1.4.4-1.el9
[2025-11-26 19:58:12] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 19:58:13] c-211-26.aglt2.org
[2025-11-26 19:58:13] apptainer works
[2025-11-26 19:58:13] Set ATHENA_PROC_NUMBER=8
[2025-11-26 19:58:13] Set ATHENA_CORE_NUMBER=8
[2025-11-26 19:58:13] Starting ATLAS job with PandaID=6894239170
[2025-11-26 19:58:13] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 11:06:22]  *** The last 200 lines of the pilot log: ***
[2025-11-28 11:06:22] 2025-11-28 16:05:18,014 | INFO     | time since job start (140730s) is within the limit (172800.0s)
[2025-11-28 11:06:22] 2025-11-28 16:05:18,016 | INFO     | monitor loop #6714: job 0:6894239170 is in state 'finished'
[2025-11-28 11:06:22] 2025-11-28 16:05:18,016 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 11:06:22] 2025-11-28 16:05:18,046 | INFO     | fitting pss+swap vs Time
[2025-11-28 11:06:22] 2025-11-28 16:05:18,050 | INFO     | sum of square deviations: 3787547419280.002
[2025-11-28 11:06:22] 2025-11-28 16:05:18,359 | INFO     | sum of deviations: 2593291667498.8555
[2025-11-28 11:06:22] 2025-11-28 16:05:18,364 | INFO     | mean x: 1764275609.2857144
[2025-11-28 11:06:22] 2025-11-28 16:05:18,364 | INFO     | mean y: 2600619.6765089016
[2025-11-28 11:06:22] 2025-11-28 16:05:18,365 | INFO     | intersect: -1205379302.4869087
[2025-11-28 11:06:22] 2025-11-28 16:05:18,372 | INFO     | chi2: 5.3109554894749325
[2025-11-28 11:06:22] 2025-11-28 16:05:18,380 | INFO     | sum of square deviations: 3762932502699.2153
[2025-11-28 11:06:22] 2025-11-28 16:05:19,298 | INFO     | sum of deviations: 2888970818365.108
[2025-11-28 11:06:22] 2025-11-28 16:05:19,302 | INFO     | mean x: 1764275456.7885118
[2025-11-28 11:06:22] 2025-11-28 16:05:19,302 | INFO     | mean y: 2602449.0269799824
[2025-11-28 11:06:22] 2025-11-28 16:05:19,303 | INFO     | intersect: -1351910369.5164459
[2025-11-28 11:06:22] 2025-11-28 16:05:19,310 | INFO     | chi2: 3.9349027742110563
[2025-11-28 11:06:22] 2025-11-28 16:05:19,310 | INFO     | current chi2=3.9349027742110563 (change=25.909701521522628 %)
[2025-11-28 11:06:22] 2025-11-28 16:05:19,314 | INFO     | sum of square deviations: 3738424051558.139
[2025-11-28 11:06:22] 2025-11-28 16:05:20,117 | INFO     | time since job start (140732s) is within the limit (172800.0s)
[2025-11-28 11:06:22] 2025-11-28 16:05:20,684 | INFO     | monitor loop #6715: job 0:6894239170 is in state 'finished'
[2025-11-28 11:06:22] 2025-11-28 16:05:20,684 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 11:06:22] 2025-11-28 16:05:21,045 | INFO     | sum of deviations: 2877575474622.0845
[2025-11-28 11:06:22] 2025-11-28 16:05:21,046 | INFO     | mean x: 1764275304.290013
[2025-11-28 11:06:22] 2025-11-28 16:05:21,046 | INFO     | mean y: 2602378.121674662
[2025-11-28 11:06:22] 2025-11-28 16:05:21,046 | INFO     | intersect: -1355412463.450506
[2025-11-28 11:06:22] 2025-11-28 16:05:21,101 | INFO     | chi2: 3.934833870860422
[2025-11-28 11:06:22] 2025-11-28 16:05:21,101 | INFO     | current chi2=3.934833870860422 (change=0.0017510814011990421 %)
[2025-11-28 11:06:22] 2025-11-28 16:05:21,101 | INFO     | right removable region: 2292
[2025-11-28 11:06:22] 2025-11-28 16:05:21,161 | INFO     | sum of square deviations: 3762930696489.2153
[2025-11-28 11:06:22] 2025-11-28 16:05:22,161 | INFO     | time since job start (140734s) is within the limit (172800.0s)
[2025-11-28 11:06:22] 2025-11-28 16:05:22,164 | INFO     | sum of deviations: 1873177346319.2146
[2025-11-28 11:06:22] 2025-11-28 16:05:22,164 | INFO     | mean x: 1764275761.7885118
[2025-11-28 11:06:22] 2025-11-28 16:05:22,164 | INFO     | mean y: 2605079.7885117494
[2025-11-28 11:06:22] 2025-11-28 16:05:22,165 | INFO     | intersect: -875646914.7873302
[2025-11-28 11:06:22] 2025-11-28 16:05:22,168 | INFO     | chi2: 2.08630545857405
[2025-11-28 11:06:22] 2025-11-28 16:05:22,168 | INFO     | current chi2=2.08630545857405 (change=60.716947021894306 %)
[2025-11-28 11:06:22] 2025-11-28 16:05:22,172 | INFO     | sum of square deviations: 3738421140026.5605
[2025-11-28 11:06:22] 2025-11-28 16:05:22,321 | INFO     | sum of deviations: 1692878719232.0894
[2025-11-28 11:06:22] 2025-11-28 16:05:22,321 | INFO     | mean x: 1764275914.2904491
[2025-11-28 11:06:22] 2025-11-28 16:05:22,321 | INFO     | mean y: 2606200.91277802
[2025-11-28 11:06:22] 2025-11-28 16:05:22,322 | INFO     | intersect: -796315332.6132225
[2025-11-28 11:06:22] 2025-11-28 16:05:22,325 | INFO     | chi2: 1.8366614687852048
[2025-11-28 11:06:22] 2025-11-28 16:05:22,325 | INFO     | current chi2=1.8366614687852048 (change=11.965840800678933 %)
[2025-11-28 11:06:22] 2025-11-28 16:05:22,325 | INFO     | left removable region: 20
[2025-11-28 11:06:22] 2025-11-28 16:05:22,328 | INFO     | sum of square deviations: 3636645464971.8784
[2025-11-28 11:06:22] 2025-11-28 16:05:22,485 | INFO     | sum of deviations: 1773565062513.975
[2025-11-28 11:06:22] 2025-11-28 16:05:22,485 | INFO     | mean x: 1764275883.799736
[2025-11-28 11:06:22] 2025-11-28 16:05:22,485 | INFO     | mean y: 2609273.960387324
[2025-11-28 11:06:22] 2025-11-28 16:05:22,486 | INFO     | intersect: -857815009.4299579
[2025-11-28 11:06:22] 2025-11-28 16:05:22,489 | INFO     | chi2: 0.28557968776057313
[2025-11-28 11:06:22] 2025-11-28 16:05:22,489 | INFO     | current memory leak: 0.49 B/s (using 2272 data points, chi2=0.29)
[2025-11-28 11:06:22] 2025-11-28 16:05:22,492 | INFO     | could have reported an average CPU frequency of 2899 MHz (79 samples)
[2025-11-28 11:06:22] 2025-11-28 16:05:22,492 | INFO     | ..............................
[2025-11-28 11:06:22] 2025-11-28 16:05:22,493 | INFO     | . Timing measurements:
[2025-11-28 11:06:22] 2025-11-28 16:05:22,493 | INFO     | . get job = 0 s
[2025-11-28 11:06:22] 2025-11-28 16:05:22,493 | INFO     | . initial setup = 9 s
[2025-11-28 11:06:22] 2025-11-28 16:05:22,493 | INFO     | . payload setup = 63 s
[2025-11-28 11:06:22] 2025-11-28 16:05:22,493 | INFO     | . stage-in = 0 s
[2025-11-28 11:06:22] 2025-11-28 16:05:22,493 | INFO     | . payload execution = 140502 s
[2025-11-28 11:06:22] 2025-11-28 16:05:22,494 | INFO     | . stage-out = 9 s
[2025-11-28 11:06:22] 2025-11-28 16:05:22,494 | INFO     | . log creation = 2 s
[2025-11-28 11:06:22] 2025-11-28 16:05:22,494 | INFO     | ..............................
[2025-11-28 11:06:22] 2025-11-28 16:05:22,643 | INFO     | 
[2025-11-28 11:06:22] 2025-11-28 16:05:22,644 | INFO     | job summary report
[2025-11-28 11:06:22] 2025-11-28 16:05:22,644 | INFO     | --------------------------------------------------
[2025-11-28 11:06:22] 2025-11-28 16:05:22,644 | INFO     | PanDA job id: 6894239170
[2025-11-28 11:06:22] 2025-11-28 16:05:22,644 | INFO     | task id: 47523939
[2025-11-28 11:06:22] 2025-11-28 16:05:22,644 | INFO     | errors: (none)
[2025-11-28 11:06:22] 2025-11-28 16:05:22,645 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-28 11:06:22] 2025-11-28 16:05:22,645 | INFO     | pilot state: finished 
[2025-11-28 11:06:22] 2025-11-28 16:05:22,645 | INFO     | transexitcode: 0
[2025-11-28 11:06:22] 2025-11-28 16:05:22,645 | INFO     | exeerrorcode: 0
[2025-11-28 11:06:22] 2025-11-28 16:05:22,645 | INFO     | exeerrordiag: 
[2025-11-28 11:06:22] 2025-11-28 16:05:22,645 | INFO     | exitcode: 0
[2025-11-28 11:06:22] 2025-11-28 16:05:22,646 | INFO     | exitmsg: OK
[2025-11-28 11:06:22] 2025-11-28 16:05:22,646 | INFO     | cpuconsumptiontime: 226052 s
[2025-11-28 11:06:22] 2025-11-28 16:05:22,646 | INFO     | nevents: 400
[2025-11-28 11:06:22] 2025-11-28 16:05:22,646 | INFO     | neventsw: 0
[2025-11-28 11:06:22] 2025-11-28 16:05:22,646 | INFO     | pid: 1717905
[2025-11-28 11:06:22] 2025-11-28 16:05:22,646 | INFO     | pgrp: 1717905
[2025-11-28 11:06:22] 2025-11-28 16:05:22,646 | INFO     | corecount: 8
[2025-11-28 11:06:22] 2025-11-28 16:05:22,647 | INFO     | event service: False
[2025-11-28 11:06:22] 2025-11-28 16:05:22,647 | INFO     | sizes: {0: 2283068, 1: 2283753, 3: 2283781, 4: 2283980, 6: 2283980, 18: 2284008, 30: 2284164, 41: 2284192, 47: 2284482, 52: 2284538, 140567: 2370321, 140568: 23706
[2025-11-28 11:06:22] 2025-11-28 16:05:22,647 | INFO     | --------------------------------------------------
[2025-11-28 11:06:22] 2025-11-28 16:05:22,647 | INFO     | 
[2025-11-28 11:06:22] 2025-11-28 16:05:22,647 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-28 11:06:22] 2025-11-28 16:05:22,673 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-28 11:06:22] 2025-11-28 16:05:22,673 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-28 11:06:22] 2025-11-28 16:05:22,673 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-28 11:06:22] 2025-11-28 16:05:22,674 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-28 11:06:22] 2025-11-28 16:05:22,674 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-28 11:06:22] 2025-11-28 16:05:22,674 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-28 11:06:22] 2025-11-28 16:05:22,674 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-28 11:06:22] 2025-11-28 16:05:22,674 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-28 11:06:22] 2025-11-28 16:05:22,674 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-28 11:06:22] 2025-11-28 16:05:22,675 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-28 11:06:22] 2025-11-28 16:05:22,675 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-28 11:06:22] 2025-11-28 16:05:22,675 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-28 11:06:22] 2025-11-28 16:05:22,675 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-28 11:06:22] 2025-11-28 16:05:22,675 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-28 11:06:22] 2025-11-28 16:05:22,675 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-28 11:06:22] 2025-11-28 16:05:22,676 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-28 11:06:22] 2025-11-28 16:05:22,676 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-28 11:06:22] 2025-11-28 16:05:22,676 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-28 11:06:22] 2025-11-28 16:05:22,676 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-28 11:06:22] 2025-11-28 16:05:22,676 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-28 11:06:22] 2025-11-28 16:05:22,677 | INFO     | job 6894239170 has completed (purged errors)
[2025-11-28 11:06:22] 2025-11-28 16:05:22,677 | INFO     | overall cleanup function is called
[2025-11-28 11:06:22] 2025-11-28 16:05:23,688 | INFO     | --- collectZombieJob: --- 10, [1717905]
[2025-11-28 11:06:22] 2025-11-28 16:05:23,688 | INFO     | zombie collector waiting for pid 1717905
[2025-11-28 11:06:22] 2025-11-28 16:05:23,688 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-28 11:06:22] 2025-11-28 16:05:23,689 | INFO     | collected zombie processes
[2025-11-28 11:06:22] 2025-11-28 16:05:23,689 | INFO     | will attempt to kill all subprocesses of pid=1717905
[2025-11-28 11:06:22] 2025-11-28 16:05:26,640 | INFO     | process IDs to be killed: [1717905] (in reverse order)
[2025-11-28 11:06:22] 2025-11-28 16:05:26,760 | WARNING  | found no corresponding commands to process id(s)
[2025-11-28 11:06:22] 2025-11-28 16:05:26,760 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-28 11:06:22] 2025-11-28 16:05:26,898 | INFO     | did not find any defunct processes belonging to 1717905
[2025-11-28 11:06:22] 2025-11-28 16:05:26,979 | INFO     | did not find any defunct processes belonging to 1717905
[2025-11-28 11:06:22] 2025-11-28 16:05:26,990 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 11:06:22] 2025-11-28 16:05:26,991 | INFO     | ready for new job
[2025-11-28 11:06:22] 2025-11-28 16:05:26,991 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 11:06:22] 2025-11-28 16:05:27,008 | INFO     | ***************************************
[2025-11-28 11:06:22] 2025-11-28 16:05:27,009 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 11:06:22] 2025-11-28 16:05:27,009 | INFO     | ***************************************
[2025-11-28 11:06:22] 2025-11-28 16:05:27,009 | INFO     | 
[2025-11-28 11:06:22] 2025-11-28 16:05:27,013 | INFO     | architecture information:
[2025-11-28 11:06:22] 2025-11-28 16:05:27,049 | INFO     | executing command: cat /etc/os-release
[2025-11-28 11:06:22] 2025-11-28 16:05:27,194 | INFO     | cat /etc/os-release:
[2025-11-28 11:06:22] NAME="CentOS Linux"
[2025-11-28 11:06:22] VERSION="7 (Core)"
[2025-11-28 11:06:22] ID="centos"
[2025-11-28 11:06:22] ID_LIKE="rhel fedora"
[2025-11-28 11:06:22] VERSION_ID="7"
[2025-11-28 11:06:22] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 11:06:22] ANSI_COLOR="0;31"
[2025-11-28 11:06:22] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 11:06:22] HOME_URL="https://www.centos.org/"
[2025-11-28 11:06:22] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 11:06:22] 
[2025-11-28 11:06:22] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 11:06:22] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 11:06:22] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 11:06:22] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 11:06:22] 
[2025-11-28 11:06:22] 2025-11-28 16:05:27,195 | INFO     | ***************************************
[2025-11-28 11:06:22] 2025-11-28 16:05:27,698 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-28 11:06:22] 2025-11-28 16:05:28,023 | INFO     | sufficient remaining disk space (51285852160 B)
[2025-11-28 11:06:22] 2025-11-28 16:05:28,024 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 11:06:22] 2025-11-28 16:05:28,024 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 11:06:22] 2025-11-28 16:05:28,024 | INFO     | update_server=False
[2025-11-28 11:06:22] 2025-11-28 16:05:28,024 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 11:06:22] 2025-11-28 16:05:28,027 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 11:06:22] 2025-11-28 16:05:28,029 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 11:06:22] 2025-11-28 16:05:28,050 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 11:06:22] 2025-11-28 16:05:28,141 | INFO     | all job control threads have been joined
[2025-11-28 11:06:22] 2025-11-28 16:05:28,345 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-28 11:06:22] 2025-11-28 16:05:28,345 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-28 11:06:22] 2025-11-28 16:05:28,345 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 11:06:22] 2025-11-28 16:05:28,346 | INFO     | will abort loop
[2025-11-28 11:06:22] 2025-11-28 16:05:28,468 | INFO     | all payload control threads have been joined
[2025-11-28 11:06:22] 2025-11-28 16:05:28,817 | INFO     | all data control threads have been joined
[2025-11-28 11:06:22] 2025-11-28 16:05:29,031 | INFO     | [job] retrieve thread has finished
[2025-11-28 11:06:22] 2025-11-28 16:05:29,034 | INFO     | [job] queue monitor thread has finished
[2025-11-28 11:06:22] 2025-11-28 16:05:29,147 | INFO     | [job] control thread has finished
[2025-11-28 11:06:22] 2025-11-28 16:05:29,194 | INFO     | [data] copytool_in thread has finished
[2025-11-28 11:06:22] 2025-11-28 16:05:29,236 | INFO     | [payload] failed_post thread has finished
[2025-11-28 11:06:22] 2025-11-28 16:05:29,243 | INFO     | [payload] validate_post thread has finished
[2025-11-28 11:06:22] 2025-11-28 16:05:29,352 | INFO     | [job] job monitor thread has finished
[2025-11-28 11:06:22] 2025-11-28 16:05:29,402 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 11:06:22] 2025-11-28 16:05:29,475 | INFO     | [payload] control thread has finished
[2025-11-28 11:06:22] 2025-11-28 16:05:29,620 | INFO     | [job] validate thread has finished
[2025-11-28 11:06:22] 2025-11-28 16:05:29,823 | INFO     | [data] control thread has finished
[2025-11-28 11:06:22] 2025-11-28 16:05:29,897 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 11:06:22] 2025-11-28 16:05:30,072 | INFO     | [data] copytool_out thread has finished
[2025-11-28 11:06:22] 2025-11-28 16:05:30,294 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 11:06:22] 2025-11-28 16:05:30,424 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 11:06:22] 2025-11-28 16:05:32,037 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 11:06:22] 2025-11-28 16:05:45,707 | INFO     | [monitor] cgroup control has ended
[2025-11-28 11:06:22] 2025-11-28 16:05:46,906 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139990300407616)>', '<ExcThread(monitor, started 139989283235584)>']
[2025-11-28 11:06:22] 2025-11-28 16:05:51,933 | INFO     | all workflow threads have been joined
[2025-11-28 11:06:22] 2025-11-28 16:05:51,933 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 11:06:22] 2025-11-28 16:05:51,934 | INFO     | traces error code: 0
[2025-11-28 11:06:22] 2025-11-28 16:05:51,934 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 11:06:22] 2025-11-28 16:06:00,210 | INFO     | PID=1685666 has CPU usage=5.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-28 11:06:22] 2025-11-28 16:06:00,211 | INFO     | .. there are 14 such processes running
[2025-11-28 11:06:22] 2025-11-28 16:06:00,211 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 11:06:22] 2025-11-28 16:06:00,211 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 11:06:22] 2025-11-28 16:06:00,212 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 11:06:22] 2025-11-28 16:06:00,212 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 11:06:22] 2025-11-28 16:06:00,212 | INFO     | [monitor] control thread has ended
[2025-11-28 11:06:22] 2025-11-28 16:06:01,335 [wrapper] ==== pilot stdout END ====
[2025-11-28 11:06:22] 2025-11-28 16:06:01,409 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 11:06:22] 2025-11-28 16:06:01,564 [wrapper] pilotpid: 1685666
[2025-11-28 11:06:22] 2025-11-28 16:06:01,650 [wrapper] Pilot exit status: 0
[2025-11-28 11:06:22] 2025-11-28 16:06:01,852 [wrapper] pandaids: 6894239170
[2025-11-28 11:06:22] 2025-11-28 16:06:02,958 [wrapper] cleanup supervisor_pilot 4023868 1685667
[2025-11-28 11:06:22] 2025-11-28 16:06:03,019 [wrapper] Test setup, not cleaning
[2025-11-28 11:06:22] 2025-11-28 16:06:03,096 [wrapper] apfmon messages muted
[2025-11-28 11:06:22] 2025-11-28 16:06:03,134 [wrapper] ==== wrapper stdout END ====
[2025-11-28 11:06:22] 2025-11-28 16:06:03,154 [wrapper] ==== wrapper stderr END ====
[2025-11-28 11:06:22]  *** Error codes and diagnostics ***
[2025-11-28 11:06:22]     "exeErrorCode": 0,
[2025-11-28 11:06:22]     "exeErrorDiag": "",
[2025-11-28 11:06:22]     "pilotErrorCode": 0,
[2025-11-28 11:06:22]     "pilotErrorDiag": "",
[2025-11-28 11:06:22]  *** Listing of results directory ***
[2025-11-28 11:06:22] total 653872
[2025-11-28 11:06:22] -rwx------. 1 boincer umatlas     36292 Nov 25 03:42 runpilot2-wrapper.sh
[2025-11-28 11:06:22] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 03:42 queuedata.json
[2025-11-28 11:06:22] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 03:42 pilot3.tar.gz
[2025-11-28 11:06:22] -rw-r--r--. 1 boincer umatlas       100 Nov 26 19:58 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 11:06:22] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 19:58 run_atlas
[2025-11-28 11:06:22] -rw-r--r--. 1 boincer umatlas       105 Nov 26 19:58 job.xml
[2025-11-28 11:06:22] -rw-r--r--. 2 boincer umatlas 297259225 Nov 26 19:58 EVNT.47523935._000002.pool.root.1
[2025-11-28 11:06:22] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 19:58 start_atlas.sh
[2025-11-28 11:06:22] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 19:58 shared
[2025-11-28 11:06:22] -rw-r--r--. 2 boincer umatlas    589934 Nov 26 19:58 input.tar.gz
[2025-11-28 11:06:22] -rw-r--r--. 1 boincer umatlas         0 Nov 26 19:58 boinc_lockfile
[2025-11-28 11:06:22] -rw-r--r--. 1 boincer umatlas      2609 Nov 26 19:58 pandaJob.out
[2025-11-28 11:06:22] -rw-------. 1 boincer umatlas        57 Nov 26 19:58 setup.sh.local
[2025-11-28 11:06:22] -rw-------. 1 boincer umatlas    991546 Nov 26 19:59 agis_schedconf.cvmfs.json
[2025-11-28 11:06:22] drwx------. 5 boincer umatlas      4096 Nov 26 19:59 pilot3
[2025-11-28 11:06:22] -rw-------. 1 boincer umatlas 334313896 Nov 28 11:02 HITS.47523939._000044.pool.root.1
[2025-11-28 11:06:22] -rw-r--r--. 1 boincer umatlas       532 Nov 28 11:02 boinc_task_state.xml
[2025-11-28 11:06:22] -rw-r--r--. 1 boincer umatlas      6525 Nov 28 11:02 init_data.xml
[2025-11-28 11:06:22] -rw-------. 1 boincer umatlas      1047 Nov 28 11:04 memory_monitor_summary.json
[2025-11-28 11:06:22] -rw-------. 1 boincer umatlas   1516240 Nov 28 11:04 agis_ddmendpoints.agis.ALL.json
[2025-11-28 11:06:22] -rw-------. 1 boincer umatlas   1893547 Nov 28 11:04 log.47523939._000044.job.log.tgz.1
[2025-11-28 11:06:22] -rw-------. 1 boincer umatlas        95 Nov 28 11:05 pilot_heartbeat.json
[2025-11-28 11:06:22] -rw-------. 1 boincer umatlas      7822 Nov 28 11:05 heartbeat.json
[2025-11-28 11:06:22] -rw-------. 1 boincer umatlas       823 Nov 28 11:06 pilotlog.txt
[2025-11-28 11:06:22] -rw-------. 1 boincer umatlas  15141944 Nov 28 11:06 log.47523939._000044.job.log.1
[2025-11-28 11:06:22] -rw-------. 1 boincer umatlas       357 Nov 28 11:06 output.list
[2025-11-28 11:06:22] -rw-r--r--. 1 boincer umatlas       620 Nov 28 11:06 runtime_log
[2025-11-28 11:06:22] -rw-------. 1 boincer umatlas  17059840 Nov 28 11:06 result.tar.gz
[2025-11-28 11:06:22] -rw-r--r--. 1 boincer umatlas      9344 Nov 28 11:06 runtime_log.err
[2025-11-28 11:06:22] -rw-------. 1 boincer umatlas       664 Nov 28 11:06 dyyLDmEo3h8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmWGMKDmO8BDPo.diag
[2025-11-28 11:06:22] -rw-r--r--. 1 boincer umatlas        29 Nov 28 11:06 wrapper_checkpoint.txt
[2025-11-28 11:06:22] -rw-r--r--. 1 boincer umatlas      8192 Nov 28 11:06 boinc_mmap_file
[2025-11-28 11:06:22] -rw-r--r--. 1 boincer umatlas     21424 Nov 28 11:06 stderr.txt
[2025-11-28 11:06:22] HITS file was successfully produced:
[2025-11-28 11:06:22] -rw-------. 1 boincer umatlas 334313896 Nov 28 11:02 shared/HITS.pool.root.1
[2025-11-28 11:06:22]  *** Contents of shared directory: ***
[2025-11-28 11:06:22] total 634040
[2025-11-28 11:06:22] -rw-r--r--. 2 boincer umatlas 297259225 Nov 26 19:58 ATLAS.root_0
[2025-11-28 11:06:22] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 19:58 start_atlas.sh
[2025-11-28 11:06:22] -rw-r--r--. 2 boincer umatlas    589934 Nov 26 19:58 input.tar.gz
[2025-11-28 11:06:22] -rw-------. 1 boincer umatlas 334313896 Nov 28 11:02 HITS.pool.root.1
[2025-11-28 11:06:22] -rw-------. 1 boincer umatlas  17059840 Nov 28 11:06 result.tar.gz
11:06:24 (1678736): run_atlas exited; CPU time 231790.279401
11:06:24 (1678736): called boinc_finish(0)

</stderr_txt>
]]>

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