Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
19:12:11 (853244): wrapper (7.7.26015): starting
19:12:11 (853244): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 19:12:11] Arguments: --nthreads 8
[2025-11-25 19:12:11] Threads: 8
[2025-11-25 19:12:11] Checking for CVMFS
[2025-11-25 19:12:12] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 19:12:12] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 19:12:12] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 19:12:13] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 19:12:13] 2.13.3.0 22787 29263 258408 153302 1 634 27795938 40960000 48593 16776704 0 426269612 99.756 250440623 48330 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-25 19:12:13] CVMFS is ok
[2025-11-25 19:12:14] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 19:12:14] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 19:12:14] Further information can be found at the LHC@home message board.
[2025-11-25 19:12:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 19:12:14] Checking for apptainer binary...
[2025-11-25 19:12:14] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 19:12:14] Running /usr/bin/apptainer --version
[2025-11-25 19:12:14] apptainer version 1.4.4-1.el9
[2025-11-25 19:12:14] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 19:12:14] c8-6-11.aglt2.org
[2025-11-25 19:12:14] apptainer works
[2025-11-25 19:12:14] Set ATHENA_PROC_NUMBER=8
[2025-11-25 19:12:14] Set ATHENA_CORE_NUMBER=8
[2025-11-25 19:12:14] Starting ATLAS job with PandaID=6891579531
[2025-11-25 19:12:14] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 04:02:53]  *** The last 200 lines of the pilot log: ***
[2025-11-26 04:02:53] 2025-11-26 09:02:05,592 | INFO     | monitor loop #1882: job 0:6891579531 is in state 'finished'
[2025-11-26 04:02:53] 2025-11-26 09:02:05,592 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 04:02:53] 2025-11-26 09:02:06,100 | INFO     | time since job start (31714s) is within the limit (172800.0s)
[2025-11-26 04:02:53] 2025-11-26 09:02:08,107 | INFO     | monitor loop #1883: job 0:6891579531 is in state 'finished'
[2025-11-26 04:02:53] 2025-11-26 09:02:08,107 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 04:02:53] 2025-11-26 09:02:08,120 | INFO     | time since job start (31716s) is within the limit (172800.0s)
[2025-11-26 04:02:53] 2025-11-26 09:02:10,127 | INFO     | time since job start (31718s) is within the limit (172800.0s)
[2025-11-26 04:02:53] 2025-11-26 09:02:10,628 | INFO     | monitor loop #1884: job 0:6891579531 is in state 'finished'
[2025-11-26 04:02:53] 2025-11-26 09:02:10,628 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 04:02:53] 2025-11-26 09:02:12,143 | INFO     | time since job start (31720s) is within the limit (172800.0s)
[2025-11-26 04:02:53] 2025-11-26 09:02:13,155 | INFO     | monitor loop #1885: job 0:6891579531 is in state 'finished'
[2025-11-26 04:02:53] 2025-11-26 09:02:13,155 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 04:02:53] 2025-11-26 09:02:14,159 | INFO     | time since job start (31722s) is within the limit (172800.0s)
[2025-11-26 04:02:53] 2025-11-26 09:02:15,660 | INFO     | monitor loop #1886: job 0:6891579531 is in state 'finished'
[2025-11-26 04:02:53] 2025-11-26 09:02:15,660 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 04:02:53] 2025-11-26 09:02:16,180 | INFO     | time since job start (31724s) is within the limit (172800.0s)
[2025-11-26 04:02:53] 2025-11-26 09:02:16,626 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-26 04:02:53] 2025-11-26 09:02:16,631 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3800.0306718750007
[2025-11-26 04:02:53] 2025-11-26 09:02:16,646 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6891579531/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 04:02:53] 2025-11-26 09:02:16,646 | INFO     | extracted standard info from prmon json
[2025-11-26 04:02:53] 2025-11-26 09:02:16,647 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 04:02:53] 2025-11-26 09:02:16,647 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 04:02:53] 2025-11-26 09:02:16,653 | INFO     | fitting pss+swap vs Time
[2025-11-26 04:02:53] 2025-11-26 09:02:16,654 | INFO     | sum of square deviations: 42847703604.98266
[2025-11-26 04:02:53] 2025-11-26 09:02:16,657 | INFO     | sum of deviations: 120364218135.3094
[2025-11-26 04:02:53] 2025-11-26 09:02:16,658 | INFO     | mean x: 1764131912.0058026
[2025-11-26 04:02:53] 2025-11-26 09:02:16,658 | INFO     | mean y: 2738556.2301740814
[2025-11-26 04:02:53] 2025-11-26 09:02:16,658 | INFO     | intersect: -4952914615.610628
[2025-11-26 04:02:53] 2025-11-26 09:02:16,658 | INFO     | chi2: 27.990928643118178
[2025-11-26 04:02:53] 2025-11-26 09:02:16,658 | INFO     | sum of square deviations: 41616778179.6698
[2025-11-26 04:02:53] 2025-11-26 09:02:16,662 | INFO     | sum of deviations: 287962677981.672
[2025-11-26 04:02:53] 2025-11-26 09:02:16,662 | INFO     | mean x: 1764131759.5253906
[2025-11-26 04:02:53] 2025-11-26 09:02:16,662 | INFO     | mean y: 2759330.1015625
[2025-11-26 04:02:53] 2025-11-26 09:02:16,662 | INFO     | intersect: -12203954596.485273
[2025-11-26 04:02:53] 2025-11-26 09:02:16,662 | INFO     | chi2: 24.37079423627632
[2025-11-26 04:02:53] 2025-11-26 09:02:16,663 | INFO     | current chi2=24.37079423627632 (change=12.933241526203881 %)
[2025-11-26 04:02:53] 2025-11-26 09:02:16,663 | INFO     | right removable region: 511
[2025-11-26 04:02:53] 2025-11-26 09:02:16,663 | INFO     | sum of square deviations: 41616145609.6698
[2025-11-26 04:02:53] 2025-11-26 09:02:16,666 | INFO     | sum of deviations: -83005787331.94516
[2025-11-26 04:02:53] 2025-11-26 09:02:16,666 | INFO     | mean x: 1764132064.5253906
[2025-11-26 04:02:53] 2025-11-26 09:02:16,666 | INFO     | mean y: 2763736.45703125
[2025-11-26 04:02:53] 2025-11-26 09:02:16,666 | INFO     | intersect: 3521426236.9898815
[2025-11-26 04:02:53] 2025-11-26 09:02:16,667 | INFO     | chi2: 23.37802845627867
[2025-11-26 04:02:53] 2025-11-26 09:02:16,667 | INFO     | current chi2=23.37802845627867 (change=16.479982660288158 %)
[2025-11-26 04:02:53] 2025-11-26 09:02:16,667 | INFO     | left removable region: 10
[2025-11-26 04:02:53] 2025-11-26 09:02:16,667 | INFO     | sum of square deviations: 38990976342.554985
[2025-11-26 04:02:53] 2025-11-26 09:02:16,670 | INFO     | sum of deviations: -49765187728.08181
[2025-11-26 04:02:53] 2025-11-26 09:02:16,670 | INFO     | mean x: 1764132034.0698602
[2025-11-26 04:02:53] 2025-11-26 09:02:16,670 | INFO     | mean y: 2812847.259481038
[2025-11-26 04:02:53] 2025-11-26 09:02:16,671 | INFO     | intersect: 2254420016.0902934
[2025-11-26 04:02:53] 2025-11-26 09:02:16,671 | INFO     | chi2: 15.33090194036448
[2025-11-26 04:02:53] 2025-11-26 09:02:16,671 | INFO     | current memory leak: -1.28 B/s (using 501 data points, chi2=15.33)
[2025-11-26 04:02:53] 2025-11-26 09:02:16,672 | INFO     | could have reported an average CPU frequency of 3800 MHz (21 samples)
[2025-11-26 04:02:53] 2025-11-26 09:02:16,672 | INFO     | ..............................
[2025-11-26 04:02:53] 2025-11-26 09:02:16,672 | INFO     | . Timing measurements:
[2025-11-26 04:02:53] 2025-11-26 09:02:16,672 | INFO     | . get job = 0 s
[2025-11-26 04:02:53] 2025-11-26 09:02:16,672 | INFO     | . initial setup = 5 s
[2025-11-26 04:02:53] 2025-11-26 09:02:16,672 | INFO     | . payload setup = 44 s
[2025-11-26 04:02:53] 2025-11-26 09:02:16,672 | INFO     | . stage-in = 0 s
[2025-11-26 04:02:53] 2025-11-26 09:02:16,672 | INFO     | . payload execution = 31571 s
[2025-11-26 04:02:53] 2025-11-26 09:02:16,672 | INFO     | . stage-out = 8 s
[2025-11-26 04:02:53] 2025-11-26 09:02:16,672 | INFO     | . log creation = 3 s
[2025-11-26 04:02:53] 2025-11-26 09:02:16,672 | INFO     | ..............................
[2025-11-26 04:02:53] 2025-11-26 09:02:16,768 | INFO     | 
[2025-11-26 04:02:53] 2025-11-26 09:02:16,768 | INFO     | job summary report
[2025-11-26 04:02:53] 2025-11-26 09:02:16,768 | INFO     | --------------------------------------------------
[2025-11-26 04:02:53] 2025-11-26 09:02:16,768 | INFO     | PanDA job id: 6891579531
[2025-11-26 04:02:53] 2025-11-26 09:02:16,768 | INFO     | task id: 47493068
[2025-11-26 04:02:53] 2025-11-26 09:02:16,768 | INFO     | errors: (none)
[2025-11-26 04:02:53] 2025-11-26 09:02:16,768 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 04:02:53] 2025-11-26 09:02:16,768 | INFO     | pilot state: finished 
[2025-11-26 04:02:53] 2025-11-26 09:02:16,768 | INFO     | transexitcode: 0
[2025-11-26 04:02:53] 2025-11-26 09:02:16,768 | INFO     | exeerrorcode: 0
[2025-11-26 04:02:53] 2025-11-26 09:02:16,768 | INFO     | exeerrordiag: 
[2025-11-26 04:02:53] 2025-11-26 09:02:16,768 | INFO     | exitcode: 0
[2025-11-26 04:02:53] 2025-11-26 09:02:16,768 | INFO     | exitmsg: OK
[2025-11-26 04:02:53] 2025-11-26 09:02:16,768 | INFO     | cpuconsumptiontime: 132366 s
[2025-11-26 04:02:53] 2025-11-26 09:02:16,768 | INFO     | nevents: 1000
[2025-11-26 04:02:53] 2025-11-26 09:02:16,768 | INFO     | neventsw: 0
[2025-11-26 04:02:53] 2025-11-26 09:02:16,768 | INFO     | pid: 885478
[2025-11-26 04:02:53] 2025-11-26 09:02:16,768 | INFO     | pgrp: 885478
[2025-11-26 04:02:53] 2025-11-26 09:02:16,768 | INFO     | corecount: 8
[2025-11-26 04:02:53] 2025-11-26 09:02:16,768 | INFO     | event service: False
[2025-11-26 04:02:53] 2025-11-26 09:02:16,768 | INFO     | sizes: {0: 2284304, 1: 2284332, 12: 2284332, 22: 2284360, 33: 2284388, 35: 2284706, 45: 2284862, 31621: 2324225, 31622: 2324224, 31631: 2333274, 31634: 2333330, 31
[2025-11-26 04:02:53] 2025-11-26 09:02:16,769 | INFO     | --------------------------------------------------
[2025-11-26 04:02:53] 2025-11-26 09:02:16,769 | INFO     | 
[2025-11-26 04:02:53] 2025-11-26 09:02:16,769 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-26 04:02:53] 2025-11-26 09:02:16,884 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 04:02:53] 2025-11-26 09:02:16,884 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 04:02:53] 2025-11-26 09:02:16,884 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 04:02:53] 2025-11-26 09:02:16,884 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 04:02:53] 2025-11-26 09:02:16,884 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 04:02:53] 2025-11-26 09:02:16,884 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 04:02:53] 2025-11-26 09:02:16,884 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 04:02:53] 2025-11-26 09:02:16,884 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 04:02:53] 2025-11-26 09:02:16,884 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 04:02:53] 2025-11-26 09:02:16,884 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 04:02:53] 2025-11-26 09:02:16,885 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 04:02:53] 2025-11-26 09:02:16,885 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 04:02:53] 2025-11-26 09:02:16,885 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 04:02:53] 2025-11-26 09:02:16,885 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 04:02:53] 2025-11-26 09:02:16,885 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 04:02:53] 2025-11-26 09:02:16,885 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 04:02:53] 2025-11-26 09:02:16,885 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 04:02:53] 2025-11-26 09:02:16,885 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 04:02:53] 2025-11-26 09:02:16,885 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 04:02:53] 2025-11-26 09:02:16,885 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 04:02:53] 2025-11-26 09:02:16,885 | INFO     | job 6891579531 has completed (purged errors)
[2025-11-26 04:02:53] 2025-11-26 09:02:16,885 | INFO     | overall cleanup function is called
[2025-11-26 04:02:53] 2025-11-26 09:02:17,913 | INFO     | --- collectZombieJob: --- 10, [885478]
[2025-11-26 04:02:53] 2025-11-26 09:02:17,913 | INFO     | zombie collector waiting for pid 885478
[2025-11-26 04:02:53] 2025-11-26 09:02:17,913 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 04:02:53] 2025-11-26 09:02:17,913 | INFO     | collected zombie processes
[2025-11-26 04:02:53] 2025-11-26 09:02:17,913 | INFO     | will attempt to kill all subprocesses of pid=885478
[2025-11-26 04:02:53] 2025-11-26 09:02:20,983 | INFO     | process IDs to be killed: [885478] (in reverse order)
[2025-11-26 04:02:53] 2025-11-26 09:02:21,312 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 04:02:53] 2025-11-26 09:02:21,313 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 04:02:53] 2025-11-26 09:02:21,491 | INFO     | did not find any defunct processes belonging to 885478
[2025-11-26 04:02:53] 2025-11-26 09:02:21,552 | INFO     | did not find any defunct processes belonging to 885478
[2025-11-26 04:02:53] 2025-11-26 09:02:21,557 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 04:02:53] 2025-11-26 09:02:21,557 | INFO     | ready for new job
[2025-11-26 04:02:53] 2025-11-26 09:02:21,557 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 04:02:53] 2025-11-26 09:02:21,559 | INFO     | ***************************************
[2025-11-26 04:02:53] 2025-11-26 09:02:21,595 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 04:02:53] 2025-11-26 09:02:21,595 | INFO     | ***************************************
[2025-11-26 04:02:53] 2025-11-26 09:02:21,595 | INFO     | 
[2025-11-26 04:02:53] 2025-11-26 09:02:21,627 | INFO     | architecture information:
[2025-11-26 04:02:53] 2025-11-26 09:02:21,643 | INFO     | executing command: cat /etc/os-release
[2025-11-26 04:02:53] 2025-11-26 09:02:21,675 | INFO     | cat /etc/os-release:
[2025-11-26 04:02:53] NAME="CentOS Linux"
[2025-11-26 04:02:53] VERSION="7 (Core)"
[2025-11-26 04:02:53] ID="centos"
[2025-11-26 04:02:53] ID_LIKE="rhel fedora"
[2025-11-26 04:02:53] VERSION_ID="7"
[2025-11-26 04:02:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 04:02:53] ANSI_COLOR="0;31"
[2025-11-26 04:02:53] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 04:02:53] HOME_URL="https://www.centos.org/"
[2025-11-26 04:02:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 04:02:53] 
[2025-11-26 04:02:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 04:02:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 04:02:53] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 04:02:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 04:02:53] 
[2025-11-26 04:02:53] 2025-11-26 09:02:21,676 | INFO     | ***************************************
[2025-11-26 04:02:53] 2025-11-26 09:02:22,179 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-26 04:02:53] 2025-11-26 09:02:22,245 | INFO     | sufficient remaining disk space (157359800320 B)
[2025-11-26 04:02:53] 2025-11-26 09:02:22,246 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 04:02:53] 2025-11-26 09:02:22,246 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 04:02:53] 2025-11-26 09:02:22,246 | INFO     | update_server=False
[2025-11-26 04:02:53] 2025-11-26 09:02:22,246 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 04:02:53] 2025-11-26 09:02:22,246 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 04:02:53] 2025-11-26 09:02:22,246 | INFO     | aborting loop
[2025-11-26 04:02:53] 2025-11-26 09:02:22,246 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 04:02:53] 2025-11-26 09:02:22,923 | INFO     | all job control threads have been joined
[2025-11-26 04:02:53] 2025-11-26 09:02:22,968 | INFO     | all data control threads have been joined
[2025-11-26 04:02:53] 2025-11-26 09:02:23,252 | INFO     | [job] retrieve thread has finished
[2025-11-26 04:02:53] 2025-11-26 09:02:23,252 | INFO     | [job] job monitor thread has finished
[2025-11-26 04:02:53] 2025-11-26 09:02:23,252 | INFO     | [job] queue monitor thread has finished
[2025-11-26 04:02:53] 2025-11-26 09:02:23,284 | INFO     | all payload control threads have been joined
[2025-11-26 04:02:53] 2025-11-26 09:02:23,301 | INFO     | [payload] validate_post thread has finished
[2025-11-26 04:02:53] 2025-11-26 09:02:23,358 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 04:02:53] 2025-11-26 09:02:23,403 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 04:02:53] 2025-11-26 09:02:23,706 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 04:02:53] 2025-11-26 09:02:23,713 | INFO     | [data] copytool_in thread has finished
[2025-11-26 04:02:53] 2025-11-26 09:02:23,801 | INFO     | [payload] failed_post thread has finished
[2025-11-26 04:02:53] 2025-11-26 09:02:23,929 | INFO     | [job] control thread has finished
[2025-11-26 04:02:53] 2025-11-26 09:02:23,991 | INFO     | [data] control thread has finished
[2025-11-26 04:02:53] 2025-11-26 09:02:23,995 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 04:02:53] 2025-11-26 09:02:23,995 | INFO     | [job] validate thread has finished
[2025-11-26 04:02:53] 2025-11-26 09:02:24,290 | INFO     | [payload] control thread has finished
[2025-11-26 04:02:53] 2025-11-26 09:02:24,318 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 04:02:53] 2025-11-26 09:02:24,459 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 04:02:53] 2025-11-26 09:02:25,364 | INFO     | [data] copytool_out thread has finished
[2025-11-26 04:02:53] 2025-11-26 09:02:28,015 | INFO     | [monitor] cgroup control has ended
[2025-11-26 04:02:53] 2025-11-26 09:02:28,473 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 04:02:53] 2025-11-26 09:02:29,970 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139993751127872)>', '<ExcThread(monitor, started 139992957437696)>']
[2025-11-26 04:02:53] 2025-11-26 09:02:34,996 | INFO     | all workflow threads have been joined
[2025-11-26 04:02:53] 2025-11-26 09:02:34,996 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 04:02:53] 2025-11-26 09:02:34,996 | INFO     | traces error code: 0
[2025-11-26 04:02:53] 2025-11-26 09:02:34,996 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 04:02:53] 2025-11-26 09:02:52,354 | INFO     | PID=862275 has CPU usage=3.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-26 04:02:53] 2025-11-26 09:02:52,355 | INFO     | .. there are 71 such processes running
[2025-11-26 04:02:53] 2025-11-26 09:02:52,362 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 04:02:53] 2025-11-26 09:02:52,362 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 04:02:53] 2025-11-26 09:02:52,362 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 04:02:53] 2025-11-26 09:02:52,362 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 04:02:53] 2025-11-26 09:02:52,362 | CRITICAL | thread 'MainThread' is not alive
[2025-11-26 04:02:53] 2025-11-26 09:02:52,362 | INFO     | [monitor] control thread has ended
[2025-11-26 04:02:53] 2025-11-26 09:02:52,738 [wrapper] ==== pilot stdout END ====
[2025-11-26 04:02:53] 2025-11-26 09:02:52,755 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 04:02:53] 2025-11-26 09:02:52,773 [wrapper] pilotpid: 862275
[2025-11-26 04:02:53] 2025-11-26 09:02:52,787 [wrapper] Pilot exit status: 0
[2025-11-26 04:02:53] 2025-11-26 09:02:52,933 [wrapper] pandaids: 6891579531
[2025-11-26 04:02:53] 2025-11-26 09:02:53,297 [wrapper] cleanup supervisor_pilot  822278 862276
[2025-11-26 04:02:53] 2025-11-26 09:02:53,324 [wrapper] Test setup, not cleaning
[2025-11-26 04:02:53] 2025-11-26 09:02:53,358 [wrapper] apfmon messages muted
[2025-11-26 04:02:53] 2025-11-26 09:02:53,374 [wrapper] ==== wrapper stdout END ====
[2025-11-26 04:02:53] 2025-11-26 09:02:53,400 [wrapper] ==== wrapper stderr END ====
[2025-11-26 04:02:53]  *** Error codes and diagnostics ***
[2025-11-26 04:02:53]     "exeErrorCode": 0,
[2025-11-26 04:02:53]     "exeErrorDiag": "",
[2025-11-26 04:02:53]     "pilotErrorCode": 0,
[2025-11-26 04:02:53]     "pilotErrorDiag": "",
[2025-11-26 04:02:53]  *** Listing of results directory ***
[2025-11-26 04:02:53] total 1309352
[2025-11-26 04:02:53] -rw-r--r--. 1 boincer umatlas    576529 Nov 18 11:45 pilot3.tar.gz
[2025-11-26 04:02:53] -rwx------. 1 boincer umatlas     36292 Nov 18 11:54 runpilot2-wrapper.sh
[2025-11-26 04:02:53] -rw-r--r--. 1 boincer umatlas      5112 Nov 18 11:54 queuedata.json
[2025-11-26 04:02:53] -rw-r--r--. 1 boincer umatlas       100 Nov 25 19:12 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 04:02:53] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 19:12 run_atlas
[2025-11-26 04:02:53] -rw-r--r--. 1 boincer umatlas       105 Nov 25 19:12 job.xml
[2025-11-26 04:02:53] -rw-r--r--. 2 boincer umatlas 410736090 Nov 25 19:12 EVNT.47493065._000401.pool.root.1
[2025-11-26 04:02:53] -rw-r--r--. 2 boincer umatlas     15120 Nov 25 19:12 start_atlas.sh
[2025-11-26 04:02:53] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 19:12 shared
[2025-11-26 04:02:53] -rw-r--r--. 2 boincer umatlas    590098 Nov 25 19:12 input.tar.gz
[2025-11-26 04:02:53] -rw-r--r--. 1 boincer umatlas         0 Nov 25 19:12 boinc_lockfile
[2025-11-26 04:02:53] -rw-r--r--. 1 boincer umatlas      2773 Nov 25 19:12 pandaJob.out
[2025-11-26 04:02:53] -rw-------. 1 boincer umatlas    991877 Nov 25 19:13 agis_schedconf.cvmfs.json
[2025-11-26 04:02:53] drwx------. 5 boincer umatlas      4096 Nov 25 19:13 pilot3
[2025-11-26 04:02:53] -rw-r--r--. 1 boincer umatlas       533 Nov 26 03:31 boinc_task_state.xml
[2025-11-26 04:02:53] -rw-r--r--. 1 boincer umatlas      7174 Nov 26 03:56 init_data.xml
[2025-11-26 04:02:53] -rw-------. 1 boincer umatlas 914609668 Nov 26 04:01 HITS.47493068._004003.pool.root.1
[2025-11-26 04:02:53] -rw-------. 1 boincer umatlas      1052 Nov 26 04:01 memory_monitor_summary.json
[2025-11-26 04:02:53] -rw-------. 1 boincer umatlas   1516240 Nov 26 04:01 agis_ddmendpoints.agis.ALL.json
[2025-11-26 04:02:53] -rw-------. 1 boincer umatlas   1760994 Nov 26 04:01 log.47493068._004003.job.log.tgz.1
[2025-11-26 04:02:53] -rw-------. 1 boincer umatlas      8582 Nov 26 04:02 heartbeat.json
[2025-11-26 04:02:53] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 04:02 boinc_mmap_file
[2025-11-26 04:02:53] -rw-------. 1 boincer umatlas        95 Nov 26 04:02 pilot_heartbeat.json
[2025-11-26 04:02:53] -rw-------. 1 boincer umatlas       892 Nov 26 04:02 pilotlog.txt
[2025-11-26 04:02:53] -rw-r--r--. 1 boincer umatlas        29 Nov 26 04:02 wrapper_checkpoint.txt
[2025-11-26 04:02:53] -rw-------. 1 boincer umatlas   3999004 Nov 26 04:02 log.47493068._004003.job.log.1
[2025-11-26 04:02:53] -rw-------. 1 boincer umatlas       353 Nov 26 04:02 output.list
[2025-11-26 04:02:53] -rw-r--r--. 1 boincer umatlas       620 Nov 26 04:02 runtime_log
[2025-11-26 04:02:53] -rw-------. 1 boincer umatlas   5775360 Nov 26 04:02 result.tar.gz
[2025-11-26 04:02:53] -rw-r--r--. 1 boincer umatlas      8699 Nov 26 04:02 runtime_log.err
[2025-11-26 04:02:53] -rw-------. 1 boincer umatlas       660 Nov 26 04:02 ivFMDmI9df8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmcUFKDmk4l23n.diag
[2025-11-26 04:02:53] -rw-r--r--. 1 boincer umatlas     21770 Nov 26 04:02 stderr.txt
[2025-11-26 04:02:54] HITS file was successfully produced:
[2025-11-26 04:02:54] -rw-------. 1 boincer umatlas 914609668 Nov 26 04:01 shared/HITS.pool.root.1
[2025-11-26 04:02:54]  *** Contents of shared directory: ***
[2025-11-26 04:02:54] total 1300532
[2025-11-26 04:02:54] -rw-r--r--. 2 boincer umatlas 410736090 Nov 25 19:12 ATLAS.root_0
[2025-11-26 04:02:54] -rw-r--r--. 2 boincer umatlas     15120 Nov 25 19:12 start_atlas.sh
[2025-11-26 04:02:54] -rw-r--r--. 2 boincer umatlas    590098 Nov 25 19:12 input.tar.gz
[2025-11-26 04:02:54] -rw-------. 1 boincer umatlas 914609668 Nov 26 04:01 HITS.pool.root.1
[2025-11-26 04:02:54] -rw-------. 1 boincer umatlas   5775360 Nov 26 04:02 result.tar.gz
04:03:16 (853244): run_atlas exited; CPU time 132868.613423
04:03:16 (853244): called boinc_finish(0)

</stderr_txt>
]]>

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