Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
17:15:45 (3557010): wrapper (7.7.26015): starting
17:15:45 (3557010): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 17:15:45] Arguments: --nthreads 8
[2025-11-25 17:15:45] Threads: 8
[2025-11-25 17:15:45] Checking for CVMFS
[2025-11-25 17:15:45] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 17:15:46] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 17:15:46] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 17:15:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 17:15:46] 2.13.3.0 11235 27502 251516 153298 0 305 29884545 32935937 54610 16776704 0 177473138 99.529 207739043 34864 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-25 17:15:46] CVMFS is ok
[2025-11-25 17:15:46] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 17:15:46] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 17:15:46] Further information can be found at the LHC@home message board.
[2025-11-25 17:15:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 17:15:46] Checking for apptainer binary...
[2025-11-25 17:15:46] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 17:15:46] Running /usr/bin/apptainer --version
[2025-11-25 17:15:46] apptainer version 1.4.4-1.el9
[2025-11-25 17:15:46] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 17:15:46] c7-2-37.aglt2.org
[2025-11-25 17:15:46] apptainer works
[2025-11-25 17:15:46] Set ATHENA_PROC_NUMBER=8
[2025-11-25 17:15:46] Set ATHENA_CORE_NUMBER=8
[2025-11-25 17:15:46] Starting ATLAS job with PandaID=6895673719
[2025-11-25 17:15:46] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
17:20:19 (3557010): BOINC client no longer exists - exiting
17:20:19 (3557010): timer handler: client dead, exiting
17:21:47 (3653568): wrapper (7.7.26015): starting
17:21:47 (3653568): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 17:21:47] Arguments: --nthreads 8
[2025-11-25 17:21:47] Threads: 8
[2025-11-25 17:21:47] This job has been restarted, cleaning up previous attempt
[2025-11-25 17:21:47] Checking for CVMFS
[2025-11-25 17:21:47] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 17:21:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 17:21:47] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 17:21:47] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 17:21:47] 2.13.3.0 11235 27508 239944 153300 2 398 29917360 32935937 45995 16776704 0 177655774 99.529 207741899 34863 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-25 17:21:47] CVMFS is ok
[2025-11-25 17:21:47] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 17:21:47] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 17:21:47] Further information can be found at the LHC@home message board.
[2025-11-25 17:21:47] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 17:21:47] Checking for apptainer binary...
[2025-11-25 17:21:47] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 17:21:47] Running /usr/bin/apptainer --version
[2025-11-25 17:21:47] apptainer version 1.4.4-1.el9
[2025-11-25 17:21:47] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 17:21:47] c7-2-37.aglt2.org
[2025-11-25 17:21:47] apptainer works
[2025-11-25 17:21:47] Set ATHENA_PROC_NUMBER=8
[2025-11-25 17:21:47] Set ATHENA_CORE_NUMBER=8
[2025-11-25 17:21:47] Starting ATLAS job with PandaID=6895673719
[2025-11-25 17:21:47] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 13:33:12]  *** The last 200 lines of the pilot log: ***
[2025-11-26 13:33:12] 2025-11-26 18:32:33,560 | INFO     | monitor loop #3743: job 0:6895673719 is in state 'finished'
[2025-11-26 13:33:12] 2025-11-26 18:32:33,560 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 13:33:12] 2025-11-26 18:32:34,538 | INFO     | PID=3693134 has CPU usage=18.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-26 13:33:12] 2025-11-26 18:32:34,538 | INFO     | .. there are 91 such processes running
[2025-11-26 13:33:12] 2025-11-26 18:32:35,539 | INFO     | time since job start (72639s) is within the limit (172800.0s)
[2025-11-26 13:33:12] 2025-11-26 18:32:36,064 | INFO     | monitor loop #3744: job 0:6895673719 is in state 'finished'
[2025-11-26 13:33:12] 2025-11-26 18:32:36,065 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 13:33:12] 2025-11-26 18:32:37,546 | INFO     | time since job start (72641s) is within the limit (172800.0s)
[2025-11-26 13:33:12] 2025-11-26 18:32:38,320 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-26 13:33:12] 2025-11-26 18:32:38,339 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3361.829072916667
[2025-11-26 13:33:12] 2025-11-26 18:32:38,359 | INFO     | using path: /tmp/boinchome/slots/7/PanDA_Pilot-6895673719/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 13:33:12] 2025-11-26 18:32:38,360 | INFO     | extracted standard info from prmon json
[2025-11-26 13:33:12] 2025-11-26 18:32:38,361 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 13:33:12] 2025-11-26 18:32:38,361 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 13:33:12] 2025-11-26 18:32:38,383 | INFO     | fitting pss+swap vs Time
[2025-11-26 13:33:12] 2025-11-26 18:32:38,388 | INFO     | sum of square deviations: 523857798533.12396
[2025-11-26 13:33:12] 2025-11-26 18:32:38,440 | INFO     | sum of deviations: 1151869255469.3909
[2025-11-26 13:33:12] 2025-11-26 18:32:38,440 | INFO     | mean x: 1764145638.5944583
[2025-11-26 13:33:12] 2025-11-26 18:32:38,441 | INFO     | mean y: 4841760.907640638
[2025-11-26 13:33:12] 2025-11-26 18:32:38,441 | INFO     | intersect: -3874197797.0743957
[2025-11-26 13:33:12] 2025-11-26 18:32:38,442 | INFO     | chi2: 10.40875493300064
[2025-11-26 13:33:12] 2025-11-26 18:32:38,447 | INFO     | sum of square deviations: 517287965703.84937
[2025-11-26 13:33:12] 2025-11-26 18:32:38,496 | INFO     | sum of deviations: 1932964852911.5498
[2025-11-26 13:33:12] 2025-11-26 18:32:38,496 | INFO     | mean x: 1764145486.0969646
[2025-11-26 13:33:12] 2025-11-26 18:32:38,496 | INFO     | mean y: 4859891.847386172
[2025-11-26 13:33:12] 2025-11-26 18:32:38,496 | INFO     | intersect: -6587273399.728661
[2025-11-26 13:33:12] 2025-11-26 18:32:38,501 | INFO     | chi2: 6.413466849974948
[2025-11-26 13:33:12] 2025-11-26 18:32:38,501 | INFO     | current chi2=6.413466849974948 (change=38.383919198239106 %)
[2025-11-26 13:33:12] 2025-11-26 18:32:38,502 | INFO     | sum of square deviations: 510773296699.56006
[2025-11-26 13:33:12] 2025-11-26 18:32:38,553 | INFO     | sum of deviations: 2236708285068.0073
[2025-11-26 13:33:12] 2025-11-26 18:32:38,554 | INFO     | mean x: 1764145333.599492
[2025-11-26 13:33:12] 2025-11-26 18:32:38,554 | INFO     | mean y: 4866994.6723116
[2025-11-26 13:33:12] 2025-11-26 18:32:38,554 | INFO     | intersect: -7720436010.051988
[2025-11-26 13:33:12] 2025-11-26 18:32:38,555 | INFO     | chi2: 5.667181278674842
[2025-11-26 13:33:12] 2025-11-26 18:32:38,555 | INFO     | current chi2=5.667181278674842 (change=11.636227156970826 %)
[2025-11-26 13:33:12] 2025-11-26 18:32:38,555 | INFO     | right removable region: 1180
[2025-11-26 13:33:12] 2025-11-26 18:32:38,556 | INFO     | sum of square deviations: 517287606231.0423
[2025-11-26 13:33:12] 2025-11-26 18:32:38,579 | INFO     | monitor loop #3745: job 0:6895673719 is in state 'finished'
[2025-11-26 13:33:12] 2025-11-26 18:32:38,579 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 13:33:12] 2025-11-26 18:32:38,610 | INFO     | sum of deviations: 559057721682.0492
[2025-11-26 13:33:12] 2025-11-26 18:32:38,610 | INFO     | mean x: 1764145791.0961213
[2025-11-26 13:33:12] 2025-11-26 18:32:38,610 | INFO     | mean y: 4855512.771500844
[2025-11-26 13:33:12] 2025-11-26 18:32:38,610 | INFO     | intersect: -1901742122.2869916
[2025-11-26 13:33:12] 2025-11-26 18:32:38,612 | INFO     | chi2: 7.94798815829925
[2025-11-26 13:33:12] 2025-11-26 18:32:38,612 | INFO     | current chi2=7.94798815829925 (change=23.641317242464847 %)
[2025-11-26 13:33:12] 2025-11-26 18:32:38,612 | INFO     | left removable region: 10
[2025-11-26 13:33:12] 2025-11-26 18:32:38,613 | INFO     | sum of square deviations: 496633622143.2998
[2025-11-26 13:33:12] 2025-11-26 18:32:38,662 | INFO     | sum of deviations: 1216550240807.1982
[2025-11-26 13:33:12] 2025-11-26 18:32:38,666 | INFO     | mean x: 1764145608.1
[2025-11-26 13:33:12] 2025-11-26 18:32:38,666 | INFO     | mean y: 4892364.246153846
[2025-11-26 13:33:12] 2025-11-26 18:32:38,666 | INFO     | intersect: -4316546355.691649
[2025-11-26 13:33:12] 2025-11-26 18:32:38,667 | INFO     | chi2: 1.8232479721291883
[2025-11-26 13:33:12] 2025-11-26 18:32:38,667 | INFO     | current memory leak: 2.45 B/s (using 1170 data points, chi2=1.82)
[2025-11-26 13:33:12] 2025-11-26 18:32:38,668 | INFO     | could have reported an average CPU frequency of 3378 MHz (43 samples)
[2025-11-26 13:33:12] 2025-11-26 18:32:38,668 | INFO     | ..............................
[2025-11-26 13:33:12] 2025-11-26 18:32:38,668 | INFO     | . Timing measurements:
[2025-11-26 13:33:12] 2025-11-26 18:32:38,668 | INFO     | . get job = 0 s
[2025-11-26 13:33:12] 2025-11-26 18:32:38,668 | INFO     | . initial setup = 0 s
[2025-11-26 13:33:12] 2025-11-26 18:32:38,668 | INFO     | . payload setup = 5 s
[2025-11-26 13:33:12] 2025-11-26 18:32:38,668 | INFO     | . stage-in = 0 s
[2025-11-26 13:33:12] 2025-11-26 18:32:38,668 | INFO     | . payload execution = 72601 s
[2025-11-26 13:33:12] 2025-11-26 18:32:38,668 | INFO     | . stage-out = 3 s
[2025-11-26 13:33:12] 2025-11-26 18:32:38,668 | INFO     | . log creation = 0 s
[2025-11-26 13:33:12] 2025-11-26 18:32:38,668 | INFO     | ..............................
[2025-11-26 13:33:12] 2025-11-26 18:32:39,281 | INFO     | 
[2025-11-26 13:33:12] 2025-11-26 18:32:39,282 | INFO     | job summary report
[2025-11-26 13:33:12] 2025-11-26 18:32:39,282 | INFO     | --------------------------------------------------
[2025-11-26 13:33:12] 2025-11-26 18:32:39,282 | INFO     | PanDA job id: 6895673719
[2025-11-26 13:33:12] 2025-11-26 18:32:39,282 | INFO     | task id: 47556161
[2025-11-26 13:33:12] 2025-11-26 18:32:39,282 | INFO     | errors: (none)
[2025-11-26 13:33:12] 2025-11-26 18:32:39,282 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 13:33:12] 2025-11-26 18:32:39,282 | INFO     | pilot state: finished 
[2025-11-26 13:33:12] 2025-11-26 18:32:39,282 | INFO     | transexitcode: 0
[2025-11-26 13:33:12] 2025-11-26 18:32:39,282 | INFO     | exeerrorcode: 0
[2025-11-26 13:33:12] 2025-11-26 18:32:39,282 | INFO     | exeerrordiag: 
[2025-11-26 13:33:12] 2025-11-26 18:32:39,282 | INFO     | exitcode: 0
[2025-11-26 13:33:12] 2025-11-26 18:32:39,283 | INFO     | exitmsg: OK
[2025-11-26 13:33:12] 2025-11-26 18:32:39,283 | INFO     | cpuconsumptiontime: 186585 s
[2025-11-26 13:33:12] 2025-11-26 18:32:39,283 | INFO     | nevents: 1000
[2025-11-26 13:33:12] 2025-11-26 18:32:39,283 | INFO     | neventsw: 0
[2025-11-26 13:33:12] 2025-11-26 18:32:39,283 | INFO     | pid: 3753602
[2025-11-26 13:33:12] 2025-11-26 18:32:39,283 | INFO     | pgrp: 3753602
[2025-11-26 13:33:12] 2025-11-26 18:32:39,283 | INFO     | corecount: 8
[2025-11-26 13:33:12] 2025-11-26 18:32:39,283 | INFO     | event service: False
[2025-11-26 13:33:12] 2025-11-26 18:32:39,283 | INFO     | sizes: {0: 2284312, 4: 2284574, 11: 2284602, 72611: 2343196, 72614: 2352190, 72615: 2352246, 72628: 2352620}
[2025-11-26 13:33:12] 2025-11-26 18:32:39,283 | INFO     | --------------------------------------------------
[2025-11-26 13:33:12] 2025-11-26 18:32:39,283 | INFO     | 
[2025-11-26 13:33:12] 2025-11-26 18:32:39,283 | INFO     | executing command: ls -lF /tmp/boinchome/slots/7
[2025-11-26 13:33:12] 2025-11-26 18:32:39,313 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 13:33:12] 2025-11-26 18:32:39,314 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 13:33:12] 2025-11-26 18:32:39,314 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 13:33:12] 2025-11-26 18:32:39,314 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 13:33:12] 2025-11-26 18:32:39,314 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 13:33:12] 2025-11-26 18:32:39,314 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 13:33:12] 2025-11-26 18:32:39,314 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 13:33:12] 2025-11-26 18:32:39,314 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 13:33:12] 2025-11-26 18:32:39,314 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 13:33:12] 2025-11-26 18:32:39,314 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 13:33:12] 2025-11-26 18:32:39,315 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 13:33:12] 2025-11-26 18:32:39,315 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 13:33:12] 2025-11-26 18:32:39,315 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 13:33:12] 2025-11-26 18:32:39,315 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 13:33:12] 2025-11-26 18:32:39,315 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 13:33:12] 2025-11-26 18:32:39,315 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 13:33:12] 2025-11-26 18:32:39,315 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 13:33:12] 2025-11-26 18:32:39,315 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 13:33:12] 2025-11-26 18:32:39,315 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 13:33:12] 2025-11-26 18:32:39,315 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 13:33:12] 2025-11-26 18:32:39,315 | INFO     | job 6895673719 has completed (purged errors)
[2025-11-26 13:33:12] 2025-11-26 18:32:39,316 | INFO     | overall cleanup function is called
[2025-11-26 13:33:12] 2025-11-26 18:32:40,334 | INFO     | --- collectZombieJob: --- 10, [3753602]
[2025-11-26 13:33:12] 2025-11-26 18:32:40,334 | INFO     | zombie collector waiting for pid 3753602
[2025-11-26 13:33:12] 2025-11-26 18:32:40,334 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 13:33:12] 2025-11-26 18:32:40,334 | INFO     | collected zombie processes
[2025-11-26 13:33:12] 2025-11-26 18:32:40,334 | INFO     | will attempt to kill all subprocesses of pid=3753602
[2025-11-26 13:33:12] 2025-11-26 18:32:41,361 | INFO     | process IDs to be killed: [3753602] (in reverse order)
[2025-11-26 13:33:12] 2025-11-26 18:32:41,645 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 13:33:12] 2025-11-26 18:32:41,645 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 13:33:12] 2025-11-26 18:32:41,717 | INFO     | did not find any defunct processes belonging to 3753602
[2025-11-26 13:33:12] 2025-11-26 18:32:41,789 | INFO     | did not find any defunct processes belonging to 3753602
[2025-11-26 13:33:12] 2025-11-26 18:32:41,794 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 13:33:12] 2025-11-26 18:32:41,794 | INFO     | ready for new job
[2025-11-26 13:33:12] 2025-11-26 18:32:41,794 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 13:33:12] 2025-11-26 18:32:41,798 | INFO     | ***************************************
[2025-11-26 13:33:12] 2025-11-26 18:32:41,798 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 13:33:12] 2025-11-26 18:32:41,798 | INFO     | ***************************************
[2025-11-26 13:33:12] 2025-11-26 18:32:41,798 | INFO     | 
[2025-11-26 13:33:12] 2025-11-26 18:32:41,807 | INFO     | architecture information:
[2025-11-26 13:33:12] 2025-11-26 18:32:41,810 | INFO     | executing command: cat /etc/os-release
[2025-11-26 13:33:12] 2025-11-26 18:32:41,829 | INFO     | cat /etc/os-release:
[2025-11-26 13:33:12] NAME="CentOS Linux"
[2025-11-26 13:33:12] VERSION="7 (Core)"
[2025-11-26 13:33:12] ID="centos"
[2025-11-26 13:33:12] ID_LIKE="rhel fedora"
[2025-11-26 13:33:12] VERSION_ID="7"
[2025-11-26 13:33:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 13:33:12] ANSI_COLOR="0;31"
[2025-11-26 13:33:12] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 13:33:12] HOME_URL="https://www.centos.org/"
[2025-11-26 13:33:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 13:33:12] 
[2025-11-26 13:33:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 13:33:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 13:33:12] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 13:33:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 13:33:12] 
[2025-11-26 13:33:12] 2025-11-26 18:32:41,829 | INFO     | ***************************************
[2025-11-26 13:33:12] 2025-11-26 18:32:42,332 | INFO     | executing command: df -mP /tmp/boinchome/slots/7
[2025-11-26 13:33:12] 2025-11-26 18:32:42,354 | INFO     | sufficient remaining disk space (63097012224 B)
[2025-11-26 13:33:12] 2025-11-26 18:32:42,354 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 13:33:12] 2025-11-26 18:32:42,354 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 13:33:12] 2025-11-26 18:32:42,355 | INFO     | update_server=False
[2025-11-26 13:33:12] 2025-11-26 18:32:42,355 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 13:33:12] 2025-11-26 18:32:42,356 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 13:33:12] 2025-11-26 18:32:42,356 | INFO     | aborting loop
[2025-11-26 13:33:12] 2025-11-26 18:32:42,357 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 13:33:12] 2025-11-26 18:32:42,978 | INFO     | all data control threads have been joined
[2025-11-26 13:33:12] 2025-11-26 18:32:43,362 | INFO     | [job] job monitor thread has finished
[2025-11-26 13:33:12] 2025-11-26 18:32:43,365 | INFO     | [job] retrieve thread has finished
[2025-11-26 13:33:12] 2025-11-26 18:32:43,418 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 13:33:12] 2025-11-26 18:32:43,485 | INFO     | [job] validate thread has finished
[2025-11-26 13:33:12] 2025-11-26 18:32:43,506 | INFO     | all job control threads have been joined
[2025-11-26 13:33:12] 2025-11-26 18:32:43,621 | INFO     | all payload control threads have been joined
[2025-11-26 13:33:12] 2025-11-26 18:32:43,653 | INFO     | [data] copytool_in thread has finished
[2025-11-26 13:33:12] 2025-11-26 18:32:43,827 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 13:33:12] 2025-11-26 18:32:43,861 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 13:33:12] 2025-11-26 18:32:43,890 | INFO     | [payload] validate_post thread has finished
[2025-11-26 13:33:12] 2025-11-26 18:32:43,914 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 13:33:12] 2025-11-26 18:32:43,997 | INFO     | [data] control thread has finished
[2025-11-26 13:33:12] 2025-11-26 18:32:44,406 | INFO     | [payload] failed_post thread has finished
[2025-11-26 13:33:12] 2025-11-26 18:32:44,512 | INFO     | [job] control thread has finished
[2025-11-26 13:33:12] 2025-11-26 18:32:44,627 | INFO     | [payload] control thread has finished
[2025-11-26 13:33:12] 2025-11-26 18:32:44,755 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 13:33:12] 2025-11-26 18:32:44,761 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 13:33:12] 2025-11-26 18:32:44,867 | INFO     | [job] queue monitor thread has finished
[2025-11-26 13:33:12] 2025-11-26 18:32:45,425 | INFO     | [data] copytool_out thread has finished
[2025-11-26 13:33:12] 2025-11-26 18:32:46,366 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 13:33:12] 2025-11-26 18:33:05,378 | INFO     | [monitor] cgroup control has ended
[2025-11-26 13:33:12] 2025-11-26 18:33:05,718 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139920240695104)>', '<ExcThread(monitor, started 139919632627456)>']
[2025-11-26 13:33:12] 2025-11-26 18:33:10,744 | INFO     | all workflow threads have been joined
[2025-11-26 13:33:12] 2025-11-26 18:33:10,746 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 13:33:12] 2025-11-26 18:33:10,746 | INFO     | traces error code: 0
[2025-11-26 13:33:12] 2025-11-26 18:33:10,746 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 13:33:12] 2025-11-26 18:33:11,782 | INFO     | PID=3693134 has CPU usage=6.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 13:33:12] 2025-11-26 18:33:11,782 | INFO     | .. there are 91 such processes running
[2025-11-26 13:33:12] 2025-11-26 18:33:11,782 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 13:33:12] 2025-11-26 18:33:11,782 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 13:33:12] 2025-11-26 18:33:11,782 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 13:33:12] 2025-11-26 18:33:11,783 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 13:33:12] 2025-11-26 18:33:11,783 | INFO     | [monitor] control thread has ended
[2025-11-26 13:33:12] 2025-11-26 18:33:11,899 [wrapper] ==== pilot stdout END ====
[2025-11-26 13:33:12] 2025-11-26 18:33:11,905 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 13:33:12] 2025-11-26 18:33:11,908 [wrapper] pilotpid: 3693134
[2025-11-26 13:33:12] 2025-11-26 18:33:11,910 [wrapper] Pilot exit status: 0
[2025-11-26 13:33:12] 2025-11-26 18:33:11,922 [wrapper] pandaids: 6895673719 6895673719
[2025-11-26 13:33:12] 2025-11-26 18:33:12,102 [wrapper] cleanup supervisor_pilot 1202019 3693136
[2025-11-26 13:33:12] 2025-11-26 18:33:12,106 [wrapper] Test setup, not cleaning
[2025-11-26 13:33:12] 2025-11-26 18:33:12,110 [wrapper] apfmon messages muted
[2025-11-26 13:33:12] 2025-11-26 18:33:12,113 [wrapper] ==== wrapper stdout END ====
[2025-11-26 13:33:12] 2025-11-26 18:33:12,117 [wrapper] ==== wrapper stderr END ====
[2025-11-26 13:33:12]  *** Error codes and diagnostics ***
[2025-11-26 13:33:12]     "exeErrorCode": 0,
[2025-11-26 13:33:12]     "exeErrorDiag": "",
[2025-11-26 13:33:12]     "pilotErrorCode": 0,
[2025-11-26 13:33:12]     "pilotErrorDiag": "",
[2025-11-26 13:33:12]  *** Listing of results directory ***
[2025-11-26 13:33:12] total 1704064
[2025-11-26 13:33:12] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-26 13:33:12] -rw-r--r--. 1 boincer umatlas    576529 Nov 24 08:08 pilot3.tar.gz
[2025-11-26 13:33:12] -rw-r--r--. 1 boincer umatlas      5112 Nov 24 08:20 queuedata.json
[2025-11-26 13:33:12] -rwx------. 1 boincer umatlas     36292 Nov 24 08:21 runpilot2-wrapper.sh
[2025-11-26 13:33:12] -rw-r--r--. 1 boincer umatlas       100 Nov 25 17:15 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 13:33:12] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 17:15 run_atlas
[2025-11-26 13:33:12] -rw-r--r--. 1 boincer umatlas       105 Nov 25 17:15 job.xml
[2025-11-26 13:33:12] -rw-r--r--. 3 boincer umatlas 407334636 Nov 25 17:15 EVNT.47483658._002046.pool.root.1
[2025-11-26 13:33:12] -rw-r--r--. 3 boincer umatlas 407334636 Nov 25 17:15 ATLAS.root_0
[2025-11-26 13:33:12] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 17:15 start_atlas.sh
[2025-11-26 13:33:12] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 17:15 shared
[2025-11-26 13:33:12] -rw-r--r--. 2 boincer umatlas    590099 Nov 25 17:15 input.tar.gz
[2025-11-26 13:33:12] -rw-r--r--. 1 boincer umatlas         0 Nov 25 17:15 boinc_lockfile
[2025-11-26 13:33:12] -rw-r--r--. 1 boincer umatlas      2784 Nov 25 17:21 pandaJob.out
[2025-11-26 13:33:12] -rw-------. 1 boincer umatlas        57 Nov 25 17:21 setup.sh.local
[2025-11-26 13:33:12] -rw-------. 1 boincer umatlas    991877 Nov 25 17:21 agis_schedconf.cvmfs.json
[2025-11-26 13:33:12] -rw-r--r--. 1 boincer umatlas       533 Nov 26 13:19 boinc_task_state.xml
[2025-11-26 13:33:12] -rw-r--r--. 1 boincer umatlas      6947 Nov 26 13:28 init_data.xml
[2025-11-26 13:33:12] -rw-------. 1 boincer umatlas 904903534 Nov 26 13:31 HITS.47556161._000299.pool.root.1
[2025-11-26 13:33:12] -rw-------. 1 boincer umatlas      1080 Nov 26 13:32 memory_monitor_summary.json
[2025-11-26 13:33:12] -rw-------. 1 boincer umatlas   1516240 Nov 26 13:32 agis_ddmendpoints.agis.ALL.json
[2025-11-26 13:33:12] -rw-------. 1 boincer umatlas   2242683 Nov 26 13:32 log.47556161._000299.job.log.tgz.1
[2025-11-26 13:33:12] -rw-------. 1 boincer umatlas        95 Nov 26 13:32 pilot_heartbeat.json
[2025-11-26 13:33:12] -rw-------. 1 boincer umatlas      8637 Nov 26 13:32 heartbeat.json
[2025-11-26 13:33:12] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 13:33 boinc_mmap_file
[2025-11-26 13:33:12] -rw-r--r--. 1 boincer umatlas        29 Nov 26 13:33 wrapper_checkpoint.txt
[2025-11-26 13:33:12] -rw-------. 1 boincer umatlas       823 Nov 26 13:33 pilotlog.txt
[2025-11-26 13:33:12] -rw-------. 1 boincer umatlas   8492643 Nov 26 13:33 log.47556161._000299.job.log.1
[2025-11-26 13:33:12] -rw-------. 1 boincer umatlas       353 Nov 26 13:33 output.list
[2025-11-26 13:33:12] -rw-r--r--. 1 boincer umatlas       620 Nov 26 13:33 runtime_log
[2025-11-26 13:33:12] -rw-------. 1 boincer umatlas  10752000 Nov 26 13:33 result.tar.gz
[2025-11-26 13:33:12] -rw-r--r--. 1 boincer umatlas      9423 Nov 26 13:33 runtime_log.err
[2025-11-26 13:33:12] -rw-------. 1 boincer umatlas       792 Nov 26 13:33 IgFLDmGglh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmqhLKDmUWFLOo.diag
[2025-11-26 13:33:12] -rw-r--r--. 1 boincer umatlas     23896 Nov 26 13:33 stderr.txt
[2025-11-26 13:33:12] HITS file was successfully produced:
[2025-11-26 13:33:12] -rw-------. 1 boincer umatlas 904903534 Nov 26 13:31 shared/HITS.pool.root.1
[2025-11-26 13:33:12]  *** Contents of shared directory: ***
[2025-11-26 13:33:12] total 1292588
[2025-11-26 13:33:12] -rw-r--r--. 3 boincer umatlas 407334636 Nov 25 17:15 ATLAS.root_0
[2025-11-26 13:33:12] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 17:15 start_atlas.sh
[2025-11-26 13:33:12] -rw-r--r--. 2 boincer umatlas    590099 Nov 25 17:15 input.tar.gz
[2025-11-26 13:33:12] -rw-------. 1 boincer umatlas 904903534 Nov 26 13:31 HITS.pool.root.1
[2025-11-26 13:33:12] -rw-------. 1 boincer umatlas  10752000 Nov 26 13:33 result.tar.gz
13:33:14 (3653568): run_atlas exited; CPU time 188990.510992
13:33:14 (3653568): called boinc_finish(0)

</stderr_txt>
]]>

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