Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
23:12:59 (29956): wrapper (7.7.26015): starting
23:12:59 (29956): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 23:12:59] Arguments: --nthreads 8
[2025-11-27 23:12:59] Threads: 8
[2025-11-27 23:12:59] Checking for CVMFS
[2025-11-27 23:13:00] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 23:13:00] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 23:13:00] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 23:13:02] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 23:13:02] 2.11.2.0 6477 287248 140024 153386 2 15 23284061 25165825 1288 130560 20 131111199 99.870 79875949 2599 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-27 23:13:02] CVMFS is ok
[2025-11-27 23:13:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 23:13:02] Checking for apptainer binary...
[2025-11-27 23:13:02] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 23:13:02] Running /usr/bin/apptainer --version
[2025-11-27 23:13:02] apptainer version 1.3.2-1.el7
[2025-11-27 23:13:02] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 23:13:18] cg-vwn261.simple-grid.lan
[2025-11-27 23:13:18] apptainer works
[2025-11-27 23:13:18] Set ATHENA_PROC_NUMBER=8
[2025-11-27 23:13:18] Set ATHENA_CORE_NUMBER=8
[2025-11-27 23:13:18] Starting ATLAS job with PandaID=6894236523
[2025-11-27 23:13:18] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 22:41:56]  *** The last 200 lines of the pilot log: ***
[2025-11-28 22:41:56] 2025-11-28 21:41:03,877 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 22:41:56] 2025-11-28 21:41:05,626 | INFO     | time since job start (84226s) is within the limit (172800.0s)
[2025-11-28 22:41:56] 2025-11-28 21:41:06,384 | INFO     | monitor loop #5690: job 0:6894236523 is in state 'finished'
[2025-11-28 22:41:56] 2025-11-28 21:41:06,385 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 22:41:56] 2025-11-28 21:41:06,773 | INFO     | PID=1362 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-28 22:41:56] 2025-11-28 21:41:06,773 | INFO     | .. there are 9 such processes running
[2025-11-28 22:41:56] 2025-11-28 21:41:07,775 | INFO     | time since job start (84228s) is within the limit (172800.0s)
[2025-11-28 22:41:56] 2025-11-28 21:41:08,889 | INFO     | monitor loop #5691: job 0:6894236523 is in state 'finished'
[2025-11-28 22:41:56] 2025-11-28 21:41:08,890 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 22:41:56] 2025-11-28 21:41:09,786 | INFO     | time since job start (84230s) is within the limit (172800.0s)
[2025-11-28 22:41:56] 2025-11-28 21:41:11,394 | INFO     | monitor loop #5692: job 0:6894236523 is in state 'finished'
[2025-11-28 22:41:56] 2025-11-28 21:41:11,395 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 22:41:56] 2025-11-28 21:41:11,797 | INFO     | time since job start (84232s) is within the limit (172800.0s)
[2025-11-28 22:41:56] 2025-11-28 21:41:13,803 | INFO     | time since job start (84234s) is within the limit (172800.0s)
[2025-11-28 22:41:56] 2025-11-28 21:41:13,899 | INFO     | monitor loop #5693: job 0:6894236523 is in state 'finished'
[2025-11-28 22:41:56] 2025-11-28 21:41:13,899 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 22:41:56] 2025-11-28 21:41:14,814 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-28 22:41:56] 2025-11-28 21:41:14,816 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-28 22:41:56] 2025-11-28 21:41:14,819 | INFO     | using path: /var/lib/boinc/slots/6/PanDA_Pilot-6894236523/memory_monitor_summary.json (trf name=prmon)
[2025-11-28 22:41:56] 2025-11-28 21:41:14,820 | INFO     | extracted standard info from prmon json
[2025-11-28 22:41:56] 2025-11-28 21:41:14,820 | INFO     | extracted standard memory fields from prmon json
[2025-11-28 22:41:56] 2025-11-28 21:41:14,820 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-28 22:41:56] 2025-11-28 21:41:14,846 | INFO     | fitting pss+swap vs Time
[2025-11-28 22:41:56] 2025-11-28 21:41:14,848 | INFO     | sum of square deviations: 799082475325.2919
[2025-11-28 22:41:56] 2025-11-28 21:41:14,912 | INFO     | sum of deviations: 3842379508420.9443
[2025-11-28 22:41:56] 2025-11-28 21:41:14,913 | INFO     | mean x: 1764324150.09628
[2025-11-28 22:41:56] 2025-11-28 21:41:14,913 | INFO     | mean y: 2844901.773158279
[2025-11-28 22:41:56] 2025-11-28 21:41:14,913 | INFO     | intersect: -8480888842.709795
[2025-11-28 22:41:56] 2025-11-28 21:41:14,915 | INFO     | chi2: 20.671006897868747
[2025-11-28 22:41:56] 2025-11-28 21:41:14,917 | INFO     | sum of square deviations: 790372100641.7595
[2025-11-28 22:41:56] 2025-11-28 21:41:14,989 | INFO     | sum of deviations: 4302304268174.397
[2025-11-28 22:41:56] 2025-11-28 21:41:14,990 | INFO     | mean x: 1764323997.600293
[2025-11-28 22:41:56] 2025-11-28 21:41:14,990 | INFO     | mean y: 2852953.4934114204
[2025-11-28 22:41:56] 2025-11-28 21:41:14,990 | INFO     | intersect: -9601052168.1004
[2025-11-28 22:41:56] 2025-11-28 21:41:14,992 | INFO     | chi2: 17.474295169322538
[2025-11-28 22:41:56] 2025-11-28 21:41:14,992 | INFO     | current chi2=17.474295169322538 (change=15.464712214264708 %)
[2025-11-28 22:41:56] 2025-11-28 21:41:14,992 | INFO     | right removable region: 1365
[2025-11-28 22:41:56] 2025-11-28 21:41:14,994 | INFO     | sum of square deviations: 790371183811.7598
[2025-11-28 22:41:56] 2025-11-28 21:41:15,050 | INFO     | sum of deviations: 3264409690040.4316
[2025-11-28 22:41:56] 2025-11-28 21:41:15,051 | INFO     | mean x: 1764324302.600293
[2025-11-28 22:41:56] 2025-11-28 21:41:15,051 | INFO     | mean y: 2855019.409224012
[2025-11-28 22:41:56] 2025-11-28 21:41:15,051 | INFO     | intersect: -7284198794.984318
[2025-11-28 22:41:56] 2025-11-28 21:41:15,053 | INFO     | chi2: 15.842438166516569
[2025-11-28 22:41:56] 2025-11-28 21:41:15,053 | INFO     | current chi2=15.842438166516569 (change=23.359136568475627 %)
[2025-11-28 22:41:56] 2025-11-28 21:41:15,053 | INFO     | left removable region: 10
[2025-11-28 22:41:56] 2025-11-28 21:41:15,055 | INFO     | sum of square deviations: 771430762213.8347
[2025-11-28 22:41:56] 2025-11-28 21:41:15,113 | INFO     | sum of deviations: 3340612930734.8755
[2025-11-28 22:41:56] 2025-11-28 21:41:15,113 | INFO     | mean x: 1764324272.109225
[2025-11-28 22:41:56] 2025-11-28 21:41:15,113 | INFO     | mean y: 2873786.6494464944
[2025-11-28 22:41:56] 2025-11-28 21:41:15,114 | INFO     | intersect: -7637376986.47661
[2025-11-28 22:41:56] 2025-11-28 21:41:15,115 | INFO     | chi2: 8.364542335544579
[2025-11-28 22:41:56] 2025-11-28 21:41:15,115 | INFO     | current memory leak: 4.33 B/s (using 1355 data points, chi2=8.36)
[2025-11-28 22:41:56] 2025-11-28 21:41:15,116 | INFO     | could have reported an average CPU frequency of 1999 MHz (47 samples)
[2025-11-28 22:41:56] 2025-11-28 21:41:15,117 | INFO     | ..............................
[2025-11-28 22:41:56] 2025-11-28 21:41:15,117 | INFO     | . Timing measurements:
[2025-11-28 22:41:56] 2025-11-28 21:41:15,117 | INFO     | . get job = 0 s
[2025-11-28 22:41:56] 2025-11-28 21:41:15,117 | INFO     | . initial setup = 11 s
[2025-11-28 22:41:56] 2025-11-28 21:41:15,117 | INFO     | . payload setup = 166 s
[2025-11-28 22:41:56] 2025-11-28 21:41:15,117 | INFO     | . stage-in = 0 s
[2025-11-28 22:41:56] 2025-11-28 21:41:15,117 | INFO     | . payload execution = 83769 s
[2025-11-28 22:41:56] 2025-11-28 21:41:15,117 | INFO     | . stage-out = 16 s
[2025-11-28 22:41:56] 2025-11-28 21:41:15,117 | INFO     | . log creation = 2 s
[2025-11-28 22:41:56] 2025-11-28 21:41:15,117 | INFO     | ..............................
[2025-11-28 22:41:56] 2025-11-28 21:41:15,243 | INFO     | 
[2025-11-28 22:41:56] 2025-11-28 21:41:15,243 | INFO     | job summary report
[2025-11-28 22:41:56] 2025-11-28 21:41:15,243 | INFO     | --------------------------------------------------
[2025-11-28 22:41:56] 2025-11-28 21:41:15,243 | INFO     | PanDA job id: 6894236523
[2025-11-28 22:41:56] 2025-11-28 21:41:15,243 | INFO     | task id: 47533962
[2025-11-28 22:41:56] 2025-11-28 21:41:15,243 | INFO     | errors: (none)
[2025-11-28 22:41:56] 2025-11-28 21:41:15,243 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-28 22:41:56] 2025-11-28 21:41:15,243 | INFO     | pilot state: finished 
[2025-11-28 22:41:56] 2025-11-28 21:41:15,244 | INFO     | transexitcode: 0
[2025-11-28 22:41:56] 2025-11-28 21:41:15,244 | INFO     | exeerrorcode: 0
[2025-11-28 22:41:56] 2025-11-28 21:41:15,244 | INFO     | exeerrordiag: 
[2025-11-28 22:41:56] 2025-11-28 21:41:15,244 | INFO     | exitcode: 0
[2025-11-28 22:41:56] 2025-11-28 21:41:15,244 | INFO     | exitmsg: OK
[2025-11-28 22:41:56] 2025-11-28 21:41:15,244 | INFO     | cpuconsumptiontime: 316286 s
[2025-11-28 22:41:56] 2025-11-28 21:41:15,244 | INFO     | nevents: 1000
[2025-11-28 22:41:56] 2025-11-28 21:41:15,244 | INFO     | neventsw: 0
[2025-11-28 22:41:56] 2025-11-28 21:41:15,244 | INFO     | pid: 7979
[2025-11-28 22:41:56] 2025-11-28 21:41:15,244 | INFO     | pgrp: 7979
[2025-11-28 22:41:56] 2025-11-28 21:41:15,244 | INFO     | corecount: 8
[2025-11-28 22:41:56] 2025-11-28 21:41:15,245 | INFO     | event service: False
[2025-11-28 22:41:56] 2025-11-28 21:41:15,245 | INFO     | sizes: {0: 2283468, 1: 2284153, 2: 2284352, 12: 2284352, 23: 2284380, 34: 2284408, 45: 2284564, 55: 2284592, 66: 2284620, 77: 2284648, 88: 2284704, 96: 2285274, 98
[2025-11-28 22:41:56] 2025-11-28 21:41:15,245 | INFO     | --------------------------------------------------
[2025-11-28 22:41:56] 2025-11-28 21:41:15,245 | INFO     | 
[2025-11-28 22:41:56] 2025-11-28 21:41:15,245 | INFO     | executing command: ls -lF /var/lib/boinc/slots/6
[2025-11-28 22:41:56] 2025-11-28 21:41:15,594 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-28 22:41:56] 2025-11-28 21:41:15,594 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-28 22:41:56] 2025-11-28 21:41:15,594 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-28 22:41:56] 2025-11-28 21:41:15,594 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-28 22:41:56] 2025-11-28 21:41:15,594 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-28 22:41:56] 2025-11-28 21:41:15,594 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-28 22:41:56] 2025-11-28 21:41:15,594 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-28 22:41:56] 2025-11-28 21:41:15,594 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-28 22:41:56] 2025-11-28 21:41:15,595 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-28 22:41:56] 2025-11-28 21:41:15,595 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-28 22:41:56] 2025-11-28 21:41:15,595 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-28 22:41:56] 2025-11-28 21:41:15,595 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-28 22:41:56] 2025-11-28 21:41:15,595 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-28 22:41:56] 2025-11-28 21:41:15,595 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-28 22:41:56] 2025-11-28 21:41:15,595 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-28 22:41:56] 2025-11-28 21:41:15,595 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-28 22:41:56] 2025-11-28 21:41:15,595 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-28 22:41:56] 2025-11-28 21:41:15,595 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-28 22:41:56] 2025-11-28 21:41:15,595 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-28 22:41:56] 2025-11-28 21:41:15,595 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-28 22:41:56] 2025-11-28 21:41:15,596 | INFO     | job 6894236523 has completed (purged errors)
[2025-11-28 22:41:56] 2025-11-28 21:41:15,596 | INFO     | overall cleanup function is called
[2025-11-28 22:41:56] 2025-11-28 21:41:16,620 | INFO     | --- collectZombieJob: --- 10, [7979]
[2025-11-28 22:41:56] 2025-11-28 21:41:16,620 | INFO     | zombie collector waiting for pid 7979
[2025-11-28 22:41:56] 2025-11-28 21:41:16,620 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-28 22:41:56] 2025-11-28 21:41:16,621 | INFO     | collected zombie processes
[2025-11-28 22:41:56] 2025-11-28 21:41:16,621 | INFO     | will attempt to kill all subprocesses of pid=7979
[2025-11-28 22:41:56] 2025-11-28 21:41:16,717 | INFO     | process IDs to be killed: [7979] (in reverse order)
[2025-11-28 22:41:56] 2025-11-28 21:41:17,532 | WARNING  | found no corresponding commands to process id(s)
[2025-11-28 22:41:56] 2025-11-28 21:41:17,532 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-28 22:41:56] 2025-11-28 21:41:17,535 | INFO     | did not find any defunct processes belonging to 7979
[2025-11-28 22:41:56] 2025-11-28 21:41:17,540 | INFO     | did not find any defunct processes belonging to 7979
[2025-11-28 22:41:56] 2025-11-28 21:41:17,634 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 22:41:56] 2025-11-28 21:41:17,635 | INFO     | ready for new job
[2025-11-28 22:41:56] 2025-11-28 21:41:17,635 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 22:41:56] 2025-11-28 21:41:17,640 | INFO     | ***************************************
[2025-11-28 22:41:56] 2025-11-28 21:41:17,640 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 22:41:56] 2025-11-28 21:41:17,640 | INFO     | ***************************************
[2025-11-28 22:41:56] 2025-11-28 21:41:17,641 | INFO     | 
[2025-11-28 22:41:56] 2025-11-28 21:41:17,641 | INFO     | pilot is running in a VM
[2025-11-28 22:41:56] 2025-11-28 21:41:17,641 | INFO     | architecture information:
[2025-11-28 22:41:56] 2025-11-28 21:41:17,642 | INFO     | executing command: cat /etc/os-release
[2025-11-28 22:41:56] 2025-11-28 21:41:17,661 | INFO     | cat /etc/os-release:
[2025-11-28 22:41:56] NAME="CentOS Linux"
[2025-11-28 22:41:56] VERSION="7 (Core)"
[2025-11-28 22:41:56] ID="centos"
[2025-11-28 22:41:56] ID_LIKE="rhel fedora"
[2025-11-28 22:41:56] VERSION_ID="7"
[2025-11-28 22:41:56] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 22:41:56] ANSI_COLOR="0;31"
[2025-11-28 22:41:56] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 22:41:56] HOME_URL="https://www.centos.org/"
[2025-11-28 22:41:56] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 22:41:56] 
[2025-11-28 22:41:56] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 22:41:56] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 22:41:56] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 22:41:56] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 22:41:56] 
[2025-11-28 22:41:56] 2025-11-28 21:41:17,661 | INFO     | ***************************************
[2025-11-28 22:41:56] 2025-11-28 21:41:18,165 | INFO     | executing command: df -mP /var/lib/boinc/slots/6
[2025-11-28 22:41:56] 2025-11-28 21:41:18,181 | INFO     | sufficient remaining disk space (494731788288 B)
[2025-11-28 22:41:56] 2025-11-28 21:41:18,181 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 22:41:56] 2025-11-28 21:41:18,181 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 22:41:56] 2025-11-28 21:41:18,182 | INFO     | update_server=False
[2025-11-28 22:41:56] 2025-11-28 21:41:18,182 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 22:41:56] 2025-11-28 21:41:18,182 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 22:41:56] 2025-11-28 21:41:18,182 | INFO     | aborting loop
[2025-11-28 22:41:56] 2025-11-28 21:41:18,991 | INFO     | all payload control threads have been joined
[2025-11-28 22:41:56] 2025-11-28 21:41:19,087 | INFO     | all job control threads have been joined
[2025-11-28 22:41:56] 2025-11-28 21:41:19,093 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 22:41:56] 2025-11-28 21:41:19,187 | INFO     | [job] job monitor thread has finished
[2025-11-28 22:41:56] 2025-11-28 21:41:19,188 | INFO     | [job] retrieve thread has finished
[2025-11-28 22:41:56] 2025-11-28 21:41:19,234 | INFO     | all data control threads have been joined
[2025-11-28 22:41:56] 2025-11-28 21:41:19,256 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 22:41:56] 2025-11-28 21:41:19,309 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 22:41:56] 2025-11-28 21:41:19,328 | INFO     | [payload] failed_post thread has finished
[2025-11-28 22:41:56] 2025-11-28 21:41:19,614 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 22:41:56] 2025-11-28 21:41:19,874 | INFO     | [job] validate thread has finished
[2025-11-28 22:41:56] 2025-11-28 21:41:19,942 | INFO     | [data] copytool_in thread has finished
[2025-11-28 22:41:56] 2025-11-28 21:41:19,997 | INFO     | [payload] control thread has finished
[2025-11-28 22:41:56] 2025-11-28 21:41:20,093 | INFO     | [job] control thread has finished
[2025-11-28 22:41:56] 2025-11-28 21:41:20,240 | INFO     | [data] control thread has finished
[2025-11-28 22:41:56] 2025-11-28 21:41:20,257 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 22:41:56] 2025-11-28 21:41:20,509 | INFO     | [payload] validate_post thread has finished
[2025-11-28 22:41:56] 2025-11-28 21:41:20,589 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 22:41:56] 2025-11-28 21:41:21,099 | INFO     | [data] copytool_out thread has finished
[2025-11-28 22:41:56] 2025-11-28 21:41:21,264 | INFO     | [job] queue monitor thread has finished
[2025-11-28 22:41:56] 2025-11-28 21:41:21,327 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 22:41:56] 2025-11-28 21:41:25,336 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 22:41:56] 2025-11-28 21:41:46,475 | INFO     | [monitor] cgroup control has ended
[2025-11-28 22:41:56] 2025-11-28 21:41:46,950 | INFO     | PID=1362 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-28 22:41:56] 2025-11-28 21:41:46,950 | INFO     | .. there are 9 such processes running
[2025-11-28 22:41:56] 2025-11-28 21:41:46,951 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 22:41:56] 2025-11-28 21:41:46,951 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 22:41:56] 2025-11-28 21:41:46,951 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 22:41:56] 2025-11-28 21:41:47,331 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140336826611520)>', '<ExcThread(monitor, started 140336168953600)>']
[2025-11-28 22:41:56] 2025-11-28 21:41:47,956 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 22:41:56] 2025-11-28 21:41:47,956 | INFO     | [monitor] control thread has ended
[2025-11-28 22:41:56] 2025-11-28 21:41:52,357 | INFO     | all workflow threads have been joined
[2025-11-28 22:41:56] 2025-11-28 21:41:52,357 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 22:41:56] 2025-11-28 21:41:52,358 | INFO     | traces error code: 0
[2025-11-28 22:41:56] 2025-11-28 21:41:52,358 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 22:41:56] 2025-11-28 21:41:52,577 [wrapper] ==== pilot stdout END ====
[2025-11-28 22:41:56] 2025-11-28 21:41:52,637 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 22:41:56] 2025-11-28 21:41:52,708 [wrapper] pilotpid: 1362
[2025-11-28 22:41:56] 2025-11-28 21:41:52,776 [wrapper] Pilot exit status: 0
[2025-11-28 22:41:56] 2025-11-28 21:41:52,970 [wrapper] pandaids: 6894236523
[2025-11-28 22:41:56] 2025-11-28 21:41:53,699 [wrapper] cleanup supervisor_pilot  8660 1363
[2025-11-28 22:41:56] 2025-11-28 21:41:53,754 [wrapper] Test setup, not cleaning
[2025-11-28 22:41:56] 2025-11-28 21:41:53,810 [wrapper] apfmon messages muted
[2025-11-28 22:41:56] 2025-11-28 21:41:53,882 [wrapper] ==== wrapper stdout END ====
[2025-11-28 22:41:56] 2025-11-28 21:41:53,940 [wrapper] ==== wrapper stderr END ====
[2025-11-28 22:41:56]  *** Error codes and diagnostics ***
[2025-11-28 22:41:56]     "exeErrorCode": 0,
[2025-11-28 22:41:56]     "exeErrorDiag": "",
[2025-11-28 22:41:56]     "pilotErrorCode": 0,
[2025-11-28 22:41:56]     "pilotErrorDiag": "",
[2025-11-28 22:41:56]  *** Listing of results directory ***
[2025-11-28 22:41:56] total 1327176
[2025-11-28 22:41:56] -rw-r--r--. 1 boinc boinc    576529 Nov 24 01:34 pilot3.tar.gz
[2025-11-28 22:41:56] -rw-r--r--. 1 boinc boinc      5112 Nov 24 01:52 queuedata.json
[2025-11-28 22:41:56] -rwx------. 1 boinc boinc     36292 Nov 24 01:53 runpilot2-wrapper.sh
[2025-11-28 22:41:56] -rw-r--r--. 1 boinc boinc       100 Nov 27 23:12 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 22:41:56] -rwxr-xr-x. 1 boinc boinc      7986 Nov 27 23:12 run_atlas
[2025-11-28 22:41:56] -rw-r--r--. 1 boinc boinc       105 Nov 27 23:12 job.xml
[2025-11-28 22:41:56] -rw-r--r--. 2 boinc boinc 408029852 Nov 27 23:12 EVNT.47493127._001001.pool.root.1
[2025-11-28 22:41:56] drwxrwx--x. 2 boinc boinc        68 Nov 27 23:12 shared
[2025-11-28 22:41:56] -rw-r--r--. 2 boinc boinc    590094 Nov 27 23:12 input.tar.gz
[2025-11-28 22:41:56] -rw-r--r--. 1 boinc boinc      6391 Nov 27 23:12 init_data.xml
[2025-11-28 22:41:56] -rw-r--r--. 2 boinc boinc     15847 Nov 27 23:12 start_atlas.sh
[2025-11-28 22:41:56] -rw-r--r--. 1 boinc boinc         0 Nov 27 23:12 boinc_lockfile
[2025-11-28 22:41:56] -rw-r--r--. 1 boinc boinc      2776 Nov 27 23:13 pandaJob.out
[2025-11-28 22:41:56] -rw-------. 1 boinc boinc    991532 Nov 27 23:17 agis_schedconf.cvmfs.json
[2025-11-28 22:41:56] drwx------. 5 boinc boinc      4096 Nov 27 23:17 pilot3
[2025-11-28 22:41:56] -rw-r--r--. 1 boinc boinc       533 Nov 28 22:23 boinc_task_state.xml
[2025-11-28 22:41:56] -rw-------. 1 boinc boinc 919710489 Nov 28 22:38 HITS.47533962._000001.pool.root.1
[2025-11-28 22:41:56] -rw-------. 1 boinc boinc      1033 Nov 28 22:39 memory_monitor_summary.json
[2025-11-28 22:41:56] -rw-------. 1 boinc boinc   1516240 Nov 28 22:39 agis_ddmendpoints.agis.ALL.json
[2025-11-28 22:41:56] -rw-------. 1 boinc boinc   2460667 Nov 28 22:39 log.47533962._000001.job.log.tgz.1
[2025-11-28 22:41:56] -rw-------. 1 boinc boinc      8619 Nov 28 22:41 heartbeat.json
[2025-11-28 22:41:56] -rw-------. 1 boinc boinc        95 Nov 28 22:41 pilot_heartbeat.json
[2025-11-28 22:41:56] -rw-r--r--. 1 boinc boinc      8192 Nov 28 22:41 boinc_mmap_file
[2025-11-28 22:41:56] -rw-r--r--. 1 boinc boinc        29 Nov 28 22:41 wrapper_checkpoint.txt
[2025-11-28 22:41:56] -rw-------. 1 boinc boinc      4883 Nov 28 22:41 pilotlog.txt
[2025-11-28 22:41:56] -rw-------. 1 boinc boinc  11231119 Nov 28 22:41 log.47533962._000001.job.log.1
[2025-11-28 22:41:56] -rw-------. 1 boinc boinc       353 Nov 28 22:41 output.list
[2025-11-28 22:41:56] -rw-r--r--. 1 boinc boinc       620 Nov 28 22:41 runtime_log
[2025-11-28 22:41:56] -rw-------. 1 boinc boinc  13711360 Nov 28 22:41 result.tar.gz
[2025-11-28 22:41:56] -rw-------. 1 boinc boinc       662 Nov 28 22:41 X9oMDmz0Zh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmFKLKDmsaIdmn.diag
[2025-11-28 22:41:56] -rw-r--r--. 1 boinc boinc      8817 Nov 28 22:41 runtime_log.err
[2025-11-28 22:41:56] -rw-r--r--. 1 boinc boinc     21448 Nov 28 22:41 stderr.txt
[2025-11-28 22:41:56] HITS file was successfully produced:
[2025-11-28 22:41:56] -rw-------. 1 boinc boinc 919710489 Nov 28 22:38 shared/HITS.pool.root.1
[2025-11-28 22:41:56]  *** Contents of shared directory: ***
[2025-11-28 22:41:56] total 1310612
[2025-11-28 22:41:56] -rw-r--r--. 2 boinc boinc 408029852 Nov 27 23:12 ATLAS.root_0
[2025-11-28 22:41:56] -rw-r--r--. 2 boinc boinc    590094 Nov 27 23:12 input.tar.gz
[2025-11-28 22:41:56] -rw-r--r--. 2 boinc boinc     15847 Nov 27 23:12 start_atlas.sh
[2025-11-28 22:41:56] -rw-------. 1 boinc boinc 919710489 Nov 28 22:38 HITS.pool.root.1
[2025-11-28 22:41:56] -rw-------. 1 boinc boinc  13711360 Nov 28 22:41 result.tar.gz
22:41:58 (29956): run_atlas exited; CPU time 316854.606432
22:41:58 (29956): called boinc_finish(0)

</stderr_txt>
]]>

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