Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
00:08:20 (26755): wrapper (7.7.26015): starting
00:08:20 (26755): wrapper: running run_atlas (--nthreads 8)
[2025-11-28 00:08:20] Arguments: --nthreads 8
[2025-11-28 00:08:20] Threads: 8
[2025-11-28 00:08:20] Checking for CVMFS
[2025-11-28 00:08:21] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-28 00:08:22] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-28 00:08:22] Running cvmfs_config stat atlas.cern.ch
[2025-11-28 00:08:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-28 00:08:23] 2.11.2.0 27084 287276 140108 153387 0 85 17587247 25165825 1288 130560 11 137795005 99.880 77291619 2868 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-28 00:08:23] CVMFS is ok
[2025-11-28 00:08:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-28 00:08:23] Checking for apptainer binary...
[2025-11-28 00:08:23] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-28 00:08:23] Running /usr/bin/apptainer --version
[2025-11-28 00:08:23] apptainer version 1.3.2-1.el7
[2025-11-28 00:08:23] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-28 00:08:45] cg-vwn405.simple-grid.lan
[2025-11-28 00:08:45] apptainer works
[2025-11-28 00:08:45] Set ATHENA_PROC_NUMBER=8
[2025-11-28 00:08:45] Set ATHENA_CORE_NUMBER=8
[2025-11-28 00:08:46] Starting ATLAS job with PandaID=6896297846
[2025-11-28 00:08:46] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 23:28:53]  *** The last 200 lines of the pilot log: ***
[2025-11-28 23:28:53] 2025-11-28 22:27:38,748 | INFO     | time since job start (83660s) is within the limit (172800.0s)
[2025-11-28 23:28:53] 2025-11-28 22:27:38,941 | INFO     | monitor loop #5664: job 0:6896297846 is in state 'finished'
[2025-11-28 23:28:53] 2025-11-28 22:27:38,942 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 23:28:53] 2025-11-28 22:27:40,756 | INFO     | time since job start (83662s) is within the limit (172800.0s)
[2025-11-28 23:28:53] 2025-11-28 22:27:41,453 | INFO     | monitor loop #5665: job 0:6896297846 is in state 'finished'
[2025-11-28 23:28:53] 2025-11-28 22:27:41,454 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 23:28:53] 2025-11-28 22:27:42,763 | INFO     | time since job start (83664s) is within the limit (172800.0s)
[2025-11-28 23:28:53] 2025-11-28 22:27:43,960 | INFO     | monitor loop #5666: job 0:6896297846 is in state 'finished'
[2025-11-28 23:28:53] 2025-11-28 22:27:43,961 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 23:28:53] 2025-11-28 22:27:44,771 | INFO     | time since job start (83666s) is within the limit (172800.0s)
[2025-11-28 23:28:53] 2025-11-28 22:27:46,467 | INFO     | monitor loop #5667: job 0:6896297846 is in state 'finished'
[2025-11-28 23:28:53] 2025-11-28 22:27:46,468 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 23:28:53] 2025-11-28 22:27:46,780 | INFO     | time since job start (83668s) is within the limit (172800.0s)
[2025-11-28 23:28:53] 2025-11-28 22:27:47,923 | INFO     | PID=30557 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-28 23:28:53] 2025-11-28 22:27:47,923 | INFO     | .. there are 9 such processes running
[2025-11-28 23:28:53] 2025-11-28 22:27:48,540 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-28 23:28:53] 2025-11-28 22:27:48,541 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-28 23:28:53] 2025-11-28 22:27:48,542 | INFO     | using path: /var/lib/boinc/slots/4/PanDA_Pilot-6896297846/memory_monitor_summary.json (trf name=prmon)
[2025-11-28 23:28:53] 2025-11-28 22:27:48,543 | INFO     | extracted standard info from prmon json
[2025-11-28 23:28:53] 2025-11-28 22:27:48,543 | INFO     | extracted standard memory fields from prmon json
[2025-11-28 23:28:53] 2025-11-28 22:27:48,543 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-28 23:28:53] 2025-11-28 22:27:48,568 | INFO     | fitting pss+swap vs Time
[2025-11-28 23:28:53] 2025-11-28 22:27:48,571 | INFO     | sum of square deviations: 783447825970.1722
[2025-11-28 23:28:53] 2025-11-28 22:27:48,620 | INFO     | sum of deviations: 2877935173330.047
[2025-11-28 23:28:53] 2025-11-28 22:27:48,620 | INFO     | mean x: 1764327217.616006
[2025-11-28 23:28:53] 2025-11-28 22:27:48,621 | INFO     | mean y: 2832759.1358296624
[2025-11-28 23:28:53] 2025-11-28 22:27:48,621 | INFO     | intersect: -6478287219.150965
[2025-11-28 23:28:53] 2025-11-28 22:27:48,622 | INFO     | chi2: 24.657311271881056
[2025-11-28 23:28:53] 2025-11-28 22:27:48,624 | INFO     | sum of square deviations: 774851653961.4208
[2025-11-28 23:28:53] 2025-11-28 22:27:48,681 | INFO     | sum of deviations: 3325129549278.259
[2025-11-28 23:28:53] 2025-11-28 22:27:48,681 | INFO     | mean x: 1764327065.120118
[2025-11-28 23:28:53] 2025-11-28 22:27:48,681 | INFO     | mean y: 2840691.5873249816
[2025-11-28 23:28:53] 2025-11-28 22:27:48,682 | INFO     | intersect: -7568435731.2341
[2025-11-28 23:28:53] 2025-11-28 22:27:48,683 | INFO     | chi2: 21.467434173782426
[2025-11-28 23:28:53] 2025-11-28 22:27:48,683 | INFO     | current chi2=21.467434173782426 (change=12.936840772806942 %)
[2025-11-28 23:28:53] 2025-11-28 22:27:48,683 | INFO     | right removable region: 1356
[2025-11-28 23:28:53] 2025-11-28 22:27:48,685 | INFO     | sum of square deviations: 774850726761.4205
[2025-11-28 23:28:53] 2025-11-28 22:27:48,735 | INFO     | sum of deviations: 2306099834787.743
[2025-11-28 23:28:53] 2025-11-28 22:27:48,735 | INFO     | mean x: 1764327370.120118
[2025-11-28 23:28:53] 2025-11-28 22:27:48,735 | INFO     | mean y: 2842902.338983051
[2025-11-28 23:28:53] 2025-11-28 22:27:48,735 | INFO     | intersect: -5248123401.520819
[2025-11-28 23:28:53] 2025-11-28 22:27:48,737 | INFO     | chi2: 19.893086107420487
[2025-11-28 23:28:53] 2025-11-28 22:27:48,737 | INFO     | current chi2=19.893086107420487 (change=19.32175455761733 %)
[2025-11-28 23:28:53] 2025-11-28 22:27:48,737 | INFO     | left removable region: 10
[2025-11-28 23:28:53] 2025-11-28 22:27:48,739 | INFO     | sum of square deviations: 756160067162.0067
[2025-11-28 23:28:53] 2025-11-28 22:27:48,813 | INFO     | sum of deviations: 2351081625717.813
[2025-11-28 23:28:53] 2025-11-28 22:27:48,813 | INFO     | mean x: 1764327339.629272
[2025-11-28 23:28:53] 2025-11-28 22:27:48,814 | INFO     | mean y: 2861678.5326894503
[2025-11-28 23:28:53] 2025-11-28 22:27:48,814 | INFO     | intersect: -5482851955.516238
[2025-11-28 23:28:53] 2025-11-28 22:27:48,815 | INFO     | chi2: 12.366891030403458
[2025-11-28 23:28:53] 2025-11-28 22:27:48,816 | INFO     | current memory leak: 3.11 B/s (using 1346 data points, chi2=12.37)
[2025-11-28 23:28:53] 2025-11-28 22:27:48,817 | INFO     | could have reported an average CPU frequency of 1999 MHz (46 samples)
[2025-11-28 23:28:53] 2025-11-28 22:27:48,817 | INFO     | ..............................
[2025-11-28 23:28:53] 2025-11-28 22:27:48,817 | INFO     | . Timing measurements:
[2025-11-28 23:28:53] 2025-11-28 22:27:48,817 | INFO     | . get job = 0 s
[2025-11-28 23:28:53] 2025-11-28 22:27:48,817 | INFO     | . initial setup = 5 s
[2025-11-28 23:28:53] 2025-11-28 22:27:48,817 | INFO     | . payload setup = 164 s
[2025-11-28 23:28:53] 2025-11-28 22:27:48,818 | INFO     | . stage-in = 0 s
[2025-11-28 23:28:53] 2025-11-28 22:27:48,818 | INFO     | . payload execution = 83218 s
[2025-11-28 23:28:53] 2025-11-28 22:27:48,818 | INFO     | . stage-out = 5 s
[2025-11-28 23:28:53] 2025-11-28 22:27:48,818 | INFO     | . log creation = 2 s
[2025-11-28 23:28:53] 2025-11-28 22:27:48,818 | INFO     | ..............................
[2025-11-28 23:28:53] 2025-11-28 22:27:48,929 | INFO     | time since job start (83670s) is within the limit (172800.0s)
[2025-11-28 23:28:53] 2025-11-28 22:27:49,394 | INFO     | 
[2025-11-28 23:28:53] 2025-11-28 22:27:49,395 | INFO     | job summary report
[2025-11-28 23:28:53] 2025-11-28 22:27:49,395 | INFO     | --------------------------------------------------
[2025-11-28 23:28:53] 2025-11-28 22:27:49,395 | INFO     | PanDA job id: 6896297846
[2025-11-28 23:28:53] 2025-11-28 22:27:49,395 | INFO     | task id: 47556149
[2025-11-28 23:28:53] 2025-11-28 22:27:49,395 | INFO     | errors: (none)
[2025-11-28 23:28:53] 2025-11-28 22:27:49,395 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-28 23:28:53] 2025-11-28 22:27:49,395 | INFO     | pilot state: finished 
[2025-11-28 23:28:53] 2025-11-28 22:27:49,395 | INFO     | transexitcode: 0
[2025-11-28 23:28:53] 2025-11-28 22:27:49,395 | INFO     | exeerrorcode: 0
[2025-11-28 23:28:53] 2025-11-28 22:27:49,395 | INFO     | exeerrordiag: 
[2025-11-28 23:28:53] 2025-11-28 22:27:49,395 | INFO     | exitcode: 0
[2025-11-28 23:28:53] 2025-11-28 22:27:49,395 | INFO     | exitmsg: OK
[2025-11-28 23:28:53] 2025-11-28 22:27:49,396 | INFO     | cpuconsumptiontime: 312309 s
[2025-11-28 23:28:53] 2025-11-28 22:27:49,396 | INFO     | nevents: 1000
[2025-11-28 23:28:53] 2025-11-28 22:27:49,396 | INFO     | neventsw: 0
[2025-11-28 23:28:53] 2025-11-28 22:27:49,396 | INFO     | pid: 4721
[2025-11-28 23:28:53] 2025-11-28 22:27:49,396 | INFO     | pgrp: 4721
[2025-11-28 23:28:53] 2025-11-28 22:27:49,396 | INFO     | corecount: 8
[2025-11-28 23:28:53] 2025-11-28 22:27:49,396 | INFO     | event service: False
[2025-11-28 23:28:53] 2025-11-28 22:27:49,396 | INFO     | sizes: {0: 2284314, 1: 2284342, 12: 2284342, 22: 2284370, 33: 2284398, 44: 2284454, 55: 2284610, 65: 2284638, 76: 2284666, 77: 2284984, 87: 2285040, 83387: 2344299
[2025-11-28 23:28:53] 2025-11-28 22:27:49,396 | INFO     | --------------------------------------------------
[2025-11-28 23:28:53] 2025-11-28 22:27:49,396 | INFO     | 
[2025-11-28 23:28:53] 2025-11-28 22:27:49,396 | INFO     | executing command: ls -lF /var/lib/boinc/slots/4
[2025-11-28 23:28:53] 2025-11-28 22:27:49,851 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-28 23:28:53] 2025-11-28 22:27:49,851 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-28 23:28:53] 2025-11-28 22:27:49,851 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-28 23:28:53] 2025-11-28 22:27:49,851 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-28 23:28:53] 2025-11-28 22:27:49,852 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-28 23:28:53] 2025-11-28 22:27:49,852 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-28 23:28:53] 2025-11-28 22:27:49,852 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-28 23:28:53] 2025-11-28 22:27:49,852 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-28 23:28:53] 2025-11-28 22:27:49,852 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-28 23:28:53] 2025-11-28 22:27:49,852 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-28 23:28:53] 2025-11-28 22:27:49,852 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-28 23:28:53] 2025-11-28 22:27:49,852 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-28 23:28:53] 2025-11-28 22:27:49,853 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-28 23:28:53] 2025-11-28 22:27:49,853 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-28 23:28:53] 2025-11-28 22:27:49,853 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-28 23:28:53] 2025-11-28 22:27:49,853 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-28 23:28:53] 2025-11-28 22:27:49,853 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-28 23:28:53] 2025-11-28 22:27:49,853 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-28 23:28:53] 2025-11-28 22:27:49,853 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-28 23:28:53] 2025-11-28 22:27:49,853 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-28 23:28:53] 2025-11-28 22:27:49,854 | INFO     | job 6896297846 has completed (purged errors)
[2025-11-28 23:28:53] 2025-11-28 22:27:49,854 | INFO     | overall cleanup function is called
[2025-11-28 23:28:53] 2025-11-28 22:27:50,870 | INFO     | --- collectZombieJob: --- 10, [4721]
[2025-11-28 23:28:53] 2025-11-28 22:27:50,871 | INFO     | zombie collector waiting for pid 4721
[2025-11-28 23:28:53] 2025-11-28 22:27:50,871 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-28 23:28:53] 2025-11-28 22:27:50,871 | INFO     | collected zombie processes
[2025-11-28 23:28:53] 2025-11-28 22:27:50,871 | INFO     | will attempt to kill all subprocesses of pid=4721
[2025-11-28 23:28:53] 2025-11-28 22:27:51,000 | INFO     | process IDs to be killed: [4721] (in reverse order)
[2025-11-28 23:28:53] 2025-11-28 22:27:51,667 | WARNING  | found no corresponding commands to process id(s)
[2025-11-28 23:28:53] 2025-11-28 22:27:51,667 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-28 23:28:53] 2025-11-28 22:27:51,670 | INFO     | did not find any defunct processes belonging to 4721
[2025-11-28 23:28:53] 2025-11-28 22:27:51,673 | INFO     | did not find any defunct processes belonging to 4721
[2025-11-28 23:28:53] 2025-11-28 22:27:51,733 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 23:28:53] 2025-11-28 22:27:51,734 | INFO     | ready for new job
[2025-11-28 23:28:53] 2025-11-28 22:27:51,734 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 23:28:53] 2025-11-28 22:27:51,739 | INFO     | ***************************************
[2025-11-28 23:28:53] 2025-11-28 22:27:51,739 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 23:28:53] 2025-11-28 22:27:51,739 | INFO     | ***************************************
[2025-11-28 23:28:53] 2025-11-28 22:27:51,739 | INFO     | 
[2025-11-28 23:28:53] 2025-11-28 22:27:51,740 | INFO     | pilot is running in a VM
[2025-11-28 23:28:53] 2025-11-28 22:27:51,740 | INFO     | architecture information:
[2025-11-28 23:28:53] 2025-11-28 22:27:51,757 | INFO     | executing command: cat /etc/os-release
[2025-11-28 23:28:53] 2025-11-28 22:27:52,031 | INFO     | cat /etc/os-release:
[2025-11-28 23:28:53] NAME="CentOS Linux"
[2025-11-28 23:28:53] VERSION="7 (Core)"
[2025-11-28 23:28:53] ID="centos"
[2025-11-28 23:28:53] ID_LIKE="rhel fedora"
[2025-11-28 23:28:53] VERSION_ID="7"
[2025-11-28 23:28:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 23:28:53] ANSI_COLOR="0;31"
[2025-11-28 23:28:53] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 23:28:53] HOME_URL="https://www.centos.org/"
[2025-11-28 23:28:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 23:28:53] 
[2025-11-28 23:28:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 23:28:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 23:28:53] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 23:28:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 23:28:53] 
[2025-11-28 23:28:53] 2025-11-28 22:27:52,031 | INFO     | ***************************************
[2025-11-28 23:28:53] 2025-11-28 22:27:52,535 | INFO     | executing command: df -mP /var/lib/boinc/slots/4
[2025-11-28 23:28:53] 2025-11-28 22:27:52,806 | INFO     | sufficient remaining disk space (493612957696 B)
[2025-11-28 23:28:53] 2025-11-28 22:27:52,806 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 23:28:53] 2025-11-28 22:27:52,807 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 23:28:53] 2025-11-28 22:27:52,807 | INFO     | update_server=False
[2025-11-28 23:28:53] 2025-11-28 22:27:52,807 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 23:28:53] 2025-11-28 22:27:52,807 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 23:28:53] 2025-11-28 22:27:52,808 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 23:28:53] 2025-11-28 22:27:52,809 | INFO     | aborting loop
[2025-11-28 23:28:53] 2025-11-28 22:27:53,026 | INFO     | all data control threads have been joined
[2025-11-28 23:28:53] 2025-11-28 22:27:53,118 | INFO     | all payload control threads have been joined
[2025-11-28 23:28:53] 2025-11-28 22:27:53,414 | INFO     | all job control threads have been joined
[2025-11-28 23:28:53] 2025-11-28 22:27:53,812 | INFO     | [job] retrieve thread has finished
[2025-11-28 23:28:53] 2025-11-28 22:27:53,815 | INFO     | [job] job monitor thread has finished
[2025-11-28 23:28:53] 2025-11-28 22:27:53,870 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 23:28:53] 2025-11-28 22:27:53,908 | INFO     | [data] copytool_in thread has finished
[2025-11-28 23:28:53] 2025-11-28 22:27:53,918 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 23:28:53] 2025-11-28 22:27:53,982 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 23:28:53] 2025-11-28 22:27:54,032 | INFO     | [data] control thread has finished
[2025-11-28 23:28:53] 2025-11-28 22:27:54,124 | INFO     | [payload] control thread has finished
[2025-11-28 23:28:53] 2025-11-28 22:27:54,227 | INFO     | [payload] validate_post thread has finished
[2025-11-28 23:28:53] 2025-11-28 22:27:54,289 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 23:28:53] 2025-11-28 22:27:54,420 | INFO     | [job] control thread has finished
[2025-11-28 23:28:53] 2025-11-28 22:27:54,484 | INFO     | [job] validate thread has finished
[2025-11-28 23:28:53] 2025-11-28 22:27:54,656 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 23:28:53] 2025-11-28 22:27:54,814 | INFO     | [data] copytool_out thread has finished
[2025-11-28 23:28:53] 2025-11-28 22:27:54,988 | INFO     | [job] queue monitor thread has finished
[2025-11-28 23:28:53] 2025-11-28 22:27:55,105 | INFO     | [payload] failed_post thread has finished
[2025-11-28 23:28:53] 2025-11-28 22:27:55,821 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 23:28:53] 2025-11-28 22:27:59,830 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 23:28:53] 2025-11-28 22:28:22,141 | INFO     | PID=30557 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-28 23:28:53] 2025-11-28 22:28:22,141 | INFO     | .. there are 9 such processes running
[2025-11-28 23:28:53] 2025-11-28 22:28:22,142 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 23:28:53] 2025-11-28 22:28:22,142 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 23:28:53] 2025-11-28 22:28:22,142 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 23:28:53] 2025-11-28 22:28:43,977 | INFO     | [monitor] cgroup control has ended
[2025-11-28 23:28:53] 2025-11-28 22:28:44,429 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140099173480256)>', '<ExcThread(monitor, started 140098603575040)>']
[2025-11-28 23:28:53] 2025-11-28 22:28:45,279 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 23:28:53] 2025-11-28 22:28:45,280 | INFO     | [monitor] control thread has ended
[2025-11-28 23:28:53] 2025-11-28 22:28:49,455 | INFO     | all workflow threads have been joined
[2025-11-28 23:28:53] 2025-11-28 22:28:49,456 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 23:28:53] 2025-11-28 22:28:49,456 | INFO     | traces error code: 0
[2025-11-28 23:28:53] 2025-11-28 22:28:49,456 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 23:28:53] 2025-11-28 22:28:49,603 [wrapper] ==== pilot stdout END ====
[2025-11-28 23:28:53] 2025-11-28 22:28:49,665 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 23:28:53] 2025-11-28 22:28:49,713 [wrapper] pilotpid: 30557
[2025-11-28 23:28:53] 2025-11-28 22:28:49,760 [wrapper] Pilot exit status: 0
[2025-11-28 23:28:53] 2025-11-28 22:28:50,154 [wrapper] pandaids: 6896297846
[2025-11-28 23:28:53] 2025-11-28 22:28:50,823 [wrapper] cleanup supervisor_pilot 30514 30558
[2025-11-28 23:28:53] 2025-11-28 22:28:50,896 [wrapper] Test setup, not cleaning
[2025-11-28 23:28:53] 2025-11-28 22:28:50,946 [wrapper] apfmon messages muted
[2025-11-28 23:28:53] 2025-11-28 22:28:51,041 [wrapper] ==== wrapper stdout END ====
[2025-11-28 23:28:53] 2025-11-28 22:28:51,150 [wrapper] ==== wrapper stderr END ====
[2025-11-28 23:28:53]  *** Error codes and diagnostics ***
[2025-11-28 23:28:53]     "exeErrorCode": 0,
[2025-11-28 23:28:53]     "exeErrorDiag": "",
[2025-11-28 23:28:53]     "pilotErrorCode": 0,
[2025-11-28 23:28:53]     "pilotErrorDiag": "",
[2025-11-28 23:28:53]  *** Listing of results directory ***
[2025-11-28 23:28:53] total 1323832
[2025-11-28 23:28:53] -rw-r--r--. 1 boinc boinc    576529 Nov 25 02:13 pilot3.tar.gz
[2025-11-28 23:28:53] -rwx------. 1 boinc boinc     36292 Nov 25 02:26 runpilot2-wrapper.sh
[2025-11-28 23:28:53] -rw-r--r--. 1 boinc boinc      5112 Nov 25 02:26 queuedata.json
[2025-11-28 23:28:53] -rw-r--r--. 1 boinc boinc       100 Nov 28 00:08 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 23:28:53] -rwxr-xr-x. 1 boinc boinc      7986 Nov 28 00:08 run_atlas
[2025-11-28 23:28:53] -rw-r--r--. 1 boinc boinc       105 Nov 28 00:08 job.xml
[2025-11-28 23:28:53] -rw-r--r--. 1 boinc boinc      6392 Nov 28 00:08 init_data.xml
[2025-11-28 23:28:53] -rw-r--r--. 2 boinc boinc 409740706 Nov 28 00:08 EVNT.47483658._001471.pool.root.1
[2025-11-28 23:28:53] -rw-r--r--. 2 boinc boinc     15847 Nov 28 00:08 start_atlas.sh
[2025-11-28 23:28:53] drwxrwx--x. 2 boinc boinc        68 Nov 28 00:08 shared
[2025-11-28 23:28:53] -rw-r--r--. 2 boinc boinc    590104 Nov 28 00:08 input.tar.gz
[2025-11-28 23:28:53] -rw-r--r--. 1 boinc boinc         0 Nov 28 00:08 boinc_lockfile
[2025-11-28 23:28:53] -rw-r--r--. 1 boinc boinc      2785 Nov 28 00:08 pandaJob.out
[2025-11-28 23:28:53] -rw-------. 1 boinc boinc    991532 Nov 28 00:13 agis_schedconf.cvmfs.json
[2025-11-28 23:28:53] drwx------. 5 boinc boinc      4096 Nov 28 00:13 pilot3
[2025-11-28 23:28:53] -rw-r--r--. 1 boinc boinc       533 Nov 28 22:59 boinc_task_state.xml
[2025-11-28 23:28:53] -rw-------. 1 boinc boinc 914701216 Nov 28 23:24 HITS.47556149._004580.pool.root.1
[2025-11-28 23:28:53] -rw-------. 1 boinc boinc      1033 Nov 28 23:26 memory_monitor_summary.json
[2025-11-28 23:28:53] -rw-------. 1 boinc boinc   1516240 Nov 28 23:26 agis_ddmendpoints.agis.ALL.json
[2025-11-28 23:28:53] -rw-------. 1 boinc boinc   2455113 Nov 28 23:26 log.47556149._004580.job.log.tgz.1
[2025-11-28 23:28:53] -rw-------. 1 boinc boinc      7941 Nov 28 23:27 heartbeat.json
[2025-11-28 23:28:53] -rw-------. 1 boinc boinc        95 Nov 28 23:28 pilot_heartbeat.json
[2025-11-28 23:28:53] -rw-r--r--. 1 boinc boinc      8192 Nov 28 23:28 boinc_mmap_file
[2025-11-28 23:28:53] -rw-r--r--. 1 boinc boinc        29 Nov 28 23:28 wrapper_checkpoint.txt
[2025-11-28 23:28:53] -rw-------. 1 boinc boinc      4884 Nov 28 23:28 pilotlog.txt
[2025-11-28 23:28:53] -rw-------. 1 boinc boinc  11172543 Nov 28 23:28 log.47556149._004580.job.log.1
[2025-11-28 23:28:53] -rw-------. 1 boinc boinc       353 Nov 28 23:28 output.list
[2025-11-28 23:28:53] -rw-r--r--. 1 boinc boinc       620 Nov 28 23:28 runtime_log
[2025-11-28 23:28:53] -rw-------. 1 boinc boinc  13649920 Nov 28 23:28 result.tar.gz
[2025-11-28 23:28:53] -rw-r--r--. 1 boinc boinc      8817 Nov 28 23:28 runtime_log.err
[2025-11-28 23:28:53] -rw-------. 1 boinc boinc       662 Nov 28 23:28 E4LKDmY0wh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmk2LKDminMbSo.diag
[2025-11-28 23:28:53] -rw-r--r--. 1 boinc boinc     21492 Nov 28 23:28 stderr.txt
[2025-11-28 23:28:53] HITS file was successfully produced:
[2025-11-28 23:28:53] -rw-------. 1 boinc boinc 914701216 Nov 28 23:24 shared/HITS.pool.root.1
[2025-11-28 23:28:53]  *** Contents of shared directory: ***
[2025-11-28 23:28:53] total 1307332
[2025-11-28 23:28:53] -rw-r--r--. 2 boinc boinc 409740706 Nov 28 00:08 ATLAS.root_0
[2025-11-28 23:28:53] -rw-r--r--. 2 boinc boinc     15847 Nov 28 00:08 start_atlas.sh
[2025-11-28 23:28:53] -rw-r--r--. 2 boinc boinc    590104 Nov 28 00:08 input.tar.gz
[2025-11-28 23:28:53] -rw-------. 1 boinc boinc 914701216 Nov 28 23:24 HITS.pool.root.1
[2025-11-28 23:28:53] -rw-------. 1 boinc boinc  13649920 Nov 28 23:28 result.tar.gz
23:28:55 (26755): run_atlas exited; CPU time 312848.973935
23:28:55 (26755): called boinc_finish(0)

</stderr_txt>
]]>

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