Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
16:48:52 (1621366): wrapper (7.7.26015): starting
16:48:52 (1621366): wrapper: running run_atlas (--nthreads 4)
[2025-11-27 16:48:52] Arguments: --nthreads 4
[2025-11-27 16:48:52] Threads: 4
[2025-11-27 16:48:52] Checking for CVMFS
[2025-11-27 16:48:52] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 16:48:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 16:48:52] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 16:48:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 16:48:53] 2.12.7.0 2869 7689 65100 153372 3 49 4279296 6144000 841 130560 0 4738069 99.988 287486 2409 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.101.46:3128 1
[2025-11-27 16:48:53] CVMFS is ok
[2025-11-27 16:48:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 16:48:53] Checking for apptainer binary...
[2025-11-27 16:48:53] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 16:48:53] Running /usr/bin/apptainer --version
[2025-11-27 16:48:53] apptainer version 1.4.2
[2025-11-27 16:48:53] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 16:48:53] TS-P310
[2025-11-27 16:48:53] apptainer works
[2025-11-27 16:48:53] Set ATHENA_PROC_NUMBER=4
[2025-11-27 16:48:53] Set ATHENA_CORE_NUMBER=4
[2025-11-27 16:48:53] Starting ATLAS job with PandaID=6895387007
[2025-11-27 16:48:53] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc2/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 06:20:27]  *** The last 200 lines of the pilot log: ***
[2025-11-28 06:20:27] 2025-11-28 05:19:19,283 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 06:20:27] 2025-11-28 05:19:20,280 | INFO     | time since job start (48621s) is within the limit (172800.0s)
[2025-11-28 06:20:27] 2025-11-28 05:19:21,369 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-28 06:20:27] 2025-11-28 05:19:21,370 | INFO     | found 4 cores (4 cores per socket, 1 socket) HT, CPU MHz: 3699.7937500000003
[2025-11-28 06:20:27] 2025-11-28 05:19:21,371 | INFO     | using path: /var/lib/boinc2/slots/0/PanDA_Pilot-6895387007/memory_monitor_summary.json (trf name=prmon)
[2025-11-28 06:20:27] 2025-11-28 05:19:21,372 | INFO     | extracted standard info from prmon json
[2025-11-28 06:20:27] 2025-11-28 05:19:21,372 | INFO     | extracted standard memory fields from prmon json
[2025-11-28 06:20:27] 2025-11-28 05:19:21,372 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-28 06:20:27] 2025-11-28 05:19:21,382 | INFO     | fitting pss+swap vs Time
[2025-11-28 06:20:27] 2025-11-28 05:19:21,383 | INFO     | sum of square deviations: 156983028958.0
[2025-11-28 06:20:27] 2025-11-28 05:19:21,393 | INFO     | sum of deviations: 651056423686.0
[2025-11-28 06:20:27] 2025-11-28 05:19:21,394 | INFO     | mean x: 1764282838.0
[2025-11-28 06:20:27] 2025-11-28 05:19:21,394 | INFO     | mean y: 2358307.65119197
[2025-11-28 06:20:27] 2025-11-28 05:19:21,394 | INFO     | intersect: -7314659859.874302
[2025-11-28 06:20:27] 2025-11-28 05:19:21,394 | INFO     | chi2: 3.2707586378576154
[2025-11-28 06:20:27] 2025-11-28 05:19:21,395 | INFO     | sum of square deviations: 154047011118.0
[2025-11-28 06:20:27] 2025-11-28 05:19:21,405 | INFO     | sum of deviations: 789337964582.5001
[2025-11-28 06:20:27] 2025-11-28 05:19:21,406 | INFO     | mean x: 1764282685.5
[2025-11-28 06:20:27] 2025-11-28 05:19:21,406 | INFO     | mean y: 2365477.2967171716
[2025-11-28 06:20:27] 2025-11-28 05:19:21,406 | INFO     | intersect: -9037831367.898638
[2025-11-28 06:20:27] 2025-11-28 05:19:21,406 | INFO     | chi2: 1.6111982725537781
[2025-11-28 06:20:27] 2025-11-28 05:19:21,407 | INFO     | current chi2=1.6111982725537781 (change=50.739310021080264 %)
[2025-11-28 06:20:27] 2025-11-28 05:19:21,407 | INFO     | sum of square deviations: 151147831178.0
[2025-11-28 06:20:27] 2025-11-28 05:19:21,418 | INFO     | sum of deviations: 782297283490.9999
[2025-11-28 06:20:27] 2025-11-28 05:19:21,418 | INFO     | mean x: 1764282533.0
[2025-11-28 06:20:27] 2025-11-28 05:19:21,418 | INFO     | mean y: 2365106.945362135
[2025-11-28 06:20:27] 2025-11-28 05:19:21,418 | INFO     | intersect: -9129048967.075512
[2025-11-28 06:20:27] 2025-11-28 05:19:21,419 | INFO     | chi2: 1.6083409487160822
[2025-11-28 06:20:27] 2025-11-28 05:19:21,419 | INFO     | current chi2=1.6083409487160822 (change=0.17734154053969847 %)
[2025-11-28 06:20:27] 2025-11-28 05:19:21,419 | INFO     | right removable region: 786
[2025-11-28 06:20:27] 2025-11-28 05:19:21,419 | INFO     | sum of square deviations: 154047011118.0
[2025-11-28 06:20:27] 2025-11-28 05:19:21,430 | INFO     | sum of deviations: 525735931569.00006
[2025-11-28 06:20:27] 2025-11-28 05:19:21,430 | INFO     | mean x: 1764282990.5
[2025-11-28 06:20:27] 2025-11-28 05:19:21,430 | INFO     | mean y: 2364800.217171717
[2025-11-28 06:20:27] 2025-11-28 05:19:21,430 | INFO     | intersect: -6018829345.843591
[2025-11-28 06:20:27] 2025-11-28 05:19:21,431 | INFO     | chi2: 1.8202895711074225
[2025-11-28 06:20:27] 2025-11-28 05:19:21,431 | INFO     | current chi2=1.8202895711074225 (change=44.34656382044341 %)
[2025-11-28 06:20:27] 2025-11-28 05:19:21,432 | INFO     | sum of square deviations: 151147831178.0
[2025-11-28 06:20:27] 2025-11-28 05:19:21,442 | INFO     | sum of deviations: 505297955134.9999
[2025-11-28 06:20:27] 2025-11-28 05:19:21,442 | INFO     | mean x: 1764283143.0
[2025-11-28 06:20:27] 2025-11-28 05:19:21,442 | INFO     | mean y: 2365874.6810673443
[2025-11-28 06:20:27] 2025-11-28 05:19:21,442 | INFO     | intersect: -5895758216.740294
[2025-11-28 06:20:27] 2025-11-28 05:19:21,443 | INFO     | chi2: 1.8137707529940164
[2025-11-28 06:20:27] 2025-11-28 05:19:21,443 | INFO     | current chi2=1.8137707529940164 (change=0.3581198407591961 %)
[2025-11-28 06:20:27] 2025-11-28 05:19:21,443 | INFO     | left removable region: 20
[2025-11-28 06:20:27] 2025-11-28 05:19:21,444 | INFO     | sum of square deviations: 139368296827.5
[2025-11-28 06:20:27] 2025-11-28 05:19:21,453 | INFO     | sum of deviations: 607563913272.0
[2025-11-28 06:20:27] 2025-11-28 05:19:21,453 | INFO     | mean x: 1764283112.5
[2025-11-28 06:20:27] 2025-11-28 05:19:21,453 | INFO     | mean y: 2374334.2114882506
[2025-11-28 06:20:27] 2025-11-28 05:19:21,453 | INFO     | intersect: -7688863747.5521345
[2025-11-28 06:20:27] 2025-11-28 05:19:21,454 | INFO     | chi2: 0.1439410845504969
[2025-11-28 06:20:27] 2025-11-28 05:19:21,454 | INFO     | current memory leak: 4.36 B/s (using 766 data points, chi2=0.14)
[2025-11-28 06:20:27] 2025-11-28 05:19:21,454 | INFO     | could have reported an average CPU frequency of 3699 MHz (30 samples)
[2025-11-28 06:20:27] 2025-11-28 05:19:21,455 | INFO     | ..............................
[2025-11-28 06:20:27] 2025-11-28 05:19:21,455 | INFO     | . Timing measurements:
[2025-11-28 06:20:27] 2025-11-28 05:19:21,455 | INFO     | . get job = 0 s
[2025-11-28 06:20:27] 2025-11-28 05:19:21,455 | INFO     | . initial setup = 1 s
[2025-11-28 06:20:27] 2025-11-28 05:19:21,455 | INFO     | . payload setup = 3 s
[2025-11-28 06:20:27] 2025-11-28 05:19:21,455 | INFO     | . stage-in = 0 s
[2025-11-28 06:20:27] 2025-11-28 05:19:21,455 | INFO     | . payload execution = 48594 s
[2025-11-28 06:20:27] 2025-11-28 05:19:21,455 | INFO     | . stage-out = 1 s
[2025-11-28 06:20:27] 2025-11-28 05:19:21,455 | INFO     | . log creation = 0 s
[2025-11-28 06:20:27] 2025-11-28 05:19:21,455 | INFO     | ..............................
[2025-11-28 06:20:27] 2025-11-28 05:19:21,522 | INFO     | 
[2025-11-28 06:20:27] 2025-11-28 05:19:21,522 | INFO     | job summary report
[2025-11-28 06:20:27] 2025-11-28 05:19:21,522 | INFO     | --------------------------------------------------
[2025-11-28 06:20:27] 2025-11-28 05:19:21,522 | INFO     | PanDA job id: 6895387007
[2025-11-28 06:20:27] 2025-11-28 05:19:21,523 | INFO     | task id: 47556149
[2025-11-28 06:20:27] 2025-11-28 05:19:21,523 | INFO     | errors: (none)
[2025-11-28 06:20:27] 2025-11-28 05:19:21,523 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-28 06:20:27] 2025-11-28 05:19:21,523 | INFO     | pilot state: finished 
[2025-11-28 06:20:27] 2025-11-28 05:19:21,523 | INFO     | transexitcode: 0
[2025-11-28 06:20:27] 2025-11-28 05:19:21,523 | INFO     | exeerrorcode: 0
[2025-11-28 06:20:27] 2025-11-28 05:19:21,523 | INFO     | exeerrordiag: 
[2025-11-28 06:20:27] 2025-11-28 05:19:21,523 | INFO     | exitcode: 0
[2025-11-28 06:20:27] 2025-11-28 05:19:21,523 | INFO     | exitmsg: OK
[2025-11-28 06:20:27] 2025-11-28 05:19:21,523 | INFO     | cpuconsumptiontime: 191246 s
[2025-11-28 06:20:27] 2025-11-28 05:19:21,523 | INFO     | nevents: 1000
[2025-11-28 06:20:27] 2025-11-28 05:19:21,523 | INFO     | neventsw: 0
[2025-11-28 06:20:27] 2025-11-28 05:19:21,523 | INFO     | pid: 1631496
[2025-11-28 06:20:27] 2025-11-28 05:19:21,523 | INFO     | pgrp: 1631496
[2025-11-28 06:20:27] 2025-11-28 05:19:21,523 | INFO     | corecount: 4
[2025-11-28 06:20:27] 2025-11-28 05:19:21,524 | INFO     | event service: False
[2025-11-28 06:20:27] 2025-11-28 05:19:21,524 | INFO     | sizes: {0: 2284144, 1: 2284343, 3: 2284605, 11: 2284633, 48600: 2332752, 48603: 2341932, 48608: 2342122}
[2025-11-28 06:20:27] 2025-11-28 05:19:21,524 | INFO     | --------------------------------------------------
[2025-11-28 06:20:27] 2025-11-28 05:19:21,524 | INFO     | 
[2025-11-28 06:20:27] 2025-11-28 05:19:21,524 | INFO     | executing command: ls -lF /var/lib/boinc2/slots/0
[2025-11-28 06:20:27] 2025-11-28 05:19:21,536 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-28 06:20:27] 2025-11-28 05:19:21,537 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-28 06:20:27] 2025-11-28 05:19:21,537 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-28 06:20:27] 2025-11-28 05:19:21,537 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-28 06:20:27] 2025-11-28 05:19:21,537 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-28 06:20:27] 2025-11-28 05:19:21,537 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-28 06:20:27] 2025-11-28 05:19:21,537 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-28 06:20:27] 2025-11-28 05:19:21,537 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-28 06:20:27] 2025-11-28 05:19:21,537 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-28 06:20:27] 2025-11-28 05:19:21,537 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-28 06:20:27] 2025-11-28 05:19:21,537 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-28 06:20:27] 2025-11-28 05:19:21,537 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-28 06:20:27] 2025-11-28 05:19:21,538 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-28 06:20:27] 2025-11-28 05:19:21,538 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-28 06:20:27] 2025-11-28 05:19:21,538 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-28 06:20:27] 2025-11-28 05:19:21,538 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-28 06:20:27] 2025-11-28 05:19:21,538 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-28 06:20:27] 2025-11-28 05:19:21,538 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-28 06:20:27] 2025-11-28 05:19:21,538 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-28 06:20:27] 2025-11-28 05:19:21,538 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-28 06:20:27] 2025-11-28 05:19:21,538 | INFO     | job 6895387007 has completed (purged errors)
[2025-11-28 06:20:27] 2025-11-28 05:19:21,538 | INFO     | overall cleanup function is called
[2025-11-28 06:20:27] 2025-11-28 05:19:22,548 | INFO     | --- collectZombieJob: --- 10, [1631496]
[2025-11-28 06:20:27] 2025-11-28 05:19:22,549 | INFO     | zombie collector waiting for pid 1631496
[2025-11-28 06:20:27] 2025-11-28 05:19:22,549 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-28 06:20:27] 2025-11-28 05:19:22,549 | INFO     | collected zombie processes
[2025-11-28 06:20:27] 2025-11-28 05:19:22,549 | INFO     | will attempt to kill all subprocesses of pid=1631496
[2025-11-28 06:20:27] 2025-11-28 05:19:22,616 | INFO     | process IDs to be killed: [1631496] (in reverse order)
[2025-11-28 06:20:27] 2025-11-28 05:19:22,643 | WARNING  | found no corresponding commands to process id(s)
[2025-11-28 06:20:27] 2025-11-28 05:19:22,643 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-28 06:20:27] 2025-11-28 05:19:22,645 | INFO     | did not find any defunct processes belonging to 1631496
[2025-11-28 06:20:27] 2025-11-28 05:19:22,647 | INFO     | did not find any defunct processes belonging to 1631496
[2025-11-28 06:20:27] 2025-11-28 05:19:22,648 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 06:20:27] 2025-11-28 05:19:22,648 | INFO     | ready for new job
[2025-11-28 06:20:27] 2025-11-28 05:19:22,648 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 06:20:27] 2025-11-28 05:19:22,651 | INFO     | ***************************************
[2025-11-28 06:20:27] 2025-11-28 05:19:22,651 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 06:20:27] 2025-11-28 05:19:22,652 | INFO     | ***************************************
[2025-11-28 06:20:27] 2025-11-28 05:19:22,652 | INFO     | 
[2025-11-28 06:20:27] 2025-11-28 05:19:22,652 | INFO     | architecture information:
[2025-11-28 06:20:27] 2025-11-28 05:19:22,652 | INFO     | executing command: cat /etc/os-release
[2025-11-28 06:20:27] 2025-11-28 05:19:22,661 | INFO     | cat /etc/os-release:
[2025-11-28 06:20:27] NAME="CentOS Linux"
[2025-11-28 06:20:27] VERSION="7 (Core)"
[2025-11-28 06:20:27] ID="centos"
[2025-11-28 06:20:27] ID_LIKE="rhel fedora"
[2025-11-28 06:20:27] VERSION_ID="7"
[2025-11-28 06:20:27] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 06:20:27] ANSI_COLOR="0;31"
[2025-11-28 06:20:27] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 06:20:27] HOME_URL="https://www.centos.org/"
[2025-11-28 06:20:27] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 06:20:27] 
[2025-11-28 06:20:27] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 06:20:27] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 06:20:27] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 06:20:27] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 06:20:27] 
[2025-11-28 06:20:27] 2025-11-28 05:19:22,662 | INFO     | ***************************************
[2025-11-28 06:20:27] 2025-11-28 05:19:23,163 | INFO     | executing command: df -mP /var/lib/boinc2/slots/0
[2025-11-28 06:20:27] 2025-11-28 05:19:23,172 | INFO     | sufficient remaining disk space (73989619712 B)
[2025-11-28 06:20:27] 2025-11-28 05:19:23,173 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 06:20:27] 2025-11-28 05:19:23,173 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 06:20:27] 2025-11-28 05:19:23,173 | INFO     | update_server=False
[2025-11-28 06:20:27] 2025-11-28 05:19:23,173 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 06:20:27] 2025-11-28 05:19:23,173 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 06:20:27] 2025-11-28 05:19:23,173 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 06:20:27] 2025-11-28 05:19:23,174 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 06:20:27] 2025-11-28 05:19:23,174 | INFO     | aborting loop
[2025-11-28 06:20:27] 2025-11-28 05:19:23,225 | INFO     | all payload control threads have been joined
[2025-11-28 06:20:27] 2025-11-28 05:19:23,438 | INFO     | all data control threads have been joined
[2025-11-28 06:20:27] 2025-11-28 05:19:23,896 | INFO     | all job control threads have been joined
[2025-11-28 06:20:27] 2025-11-28 05:19:24,178 | INFO     | [job] retrieve thread has finished
[2025-11-28 06:20:27] 2025-11-28 05:19:24,179 | INFO     | [job] job monitor thread has finished
[2025-11-28 06:20:27] 2025-11-28 05:19:24,179 | INFO     | [job] queue monitor thread has finished
[2025-11-28 06:20:27] 2025-11-28 05:19:24,231 | INFO     | [payload] control thread has finished
[2025-11-28 06:20:27] 2025-11-28 05:19:24,443 | INFO     | [data] control thread has finished
[2025-11-28 06:20:27] 2025-11-28 05:19:24,443 | INFO     | [payload] validate_post thread has finished
[2025-11-28 06:20:27] 2025-11-28 05:19:24,629 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 06:20:27] 2025-11-28 05:19:24,897 | INFO     | [job] control thread has finished
[2025-11-28 06:20:27] 2025-11-28 05:19:25,256 | INFO     | [job] validate thread has finished
[2025-11-28 06:20:27] 2025-11-28 05:19:25,266 | INFO     | [payload] failed_post thread has finished
[2025-11-28 06:20:27] 2025-11-28 05:19:25,273 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 06:20:27] 2025-11-28 05:19:25,390 | INFO     | [data] copytool_in thread has finished
[2025-11-28 06:20:27] 2025-11-28 05:19:25,620 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 06:20:27] 2025-11-28 05:19:25,626 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 06:20:27] 2025-11-28 05:19:26,634 | INFO     | [data] copytool_out thread has finished
[2025-11-28 06:20:27] 2025-11-28 05:19:27,179 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 06:20:27] 2025-11-28 05:19:33,826 | INFO     | job.realtimelogging is not enabled
[2025-11-28 06:20:27] 2025-11-28 05:19:34,830 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 06:20:27] 2025-11-28 05:19:53,429 | INFO     | PID=1625072 has CPU usage=4.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-28 06:20:27] 2025-11-28 05:19:53,429 | INFO     | .. there are 2 such processes running
[2025-11-28 06:20:27] 2025-11-28 05:19:53,429 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 06:20:27] 2025-11-28 05:19:53,429 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 06:20:27] 2025-11-28 05:19:53,429 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 06:20:27] 2025-11-28 05:20:19,962 | INFO     | [monitor] cgroup control has ended
[2025-11-28 06:20:27] 2025-11-28 05:20:21,856 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139898603439936)>', '<ExcThread(monitor, started 139898250045184)>']
[2025-11-28 06:20:27] 2025-11-28 05:20:22,540 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 06:20:27] 2025-11-28 05:20:22,540 | INFO     | [monitor] control thread has ended
[2025-11-28 06:20:27] 2025-11-28 05:20:26,880 | INFO     | all workflow threads have been joined
[2025-11-28 06:20:27] 2025-11-28 05:20:26,880 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 06:20:27] 2025-11-28 05:20:26,880 | INFO     | traces error code: 0
[2025-11-28 06:20:27] 2025-11-28 05:20:26,880 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 06:20:27] 2025-11-28 05:20:26,956 [wrapper] ==== pilot stdout END ====
[2025-11-28 06:20:27] 2025-11-28 05:20:26,957 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 06:20:27] 2025-11-28 05:20:26,959 [wrapper] pilotpid: 1625072
[2025-11-28 06:20:27] 2025-11-28 05:20:26,961 [wrapper] Pilot exit status: 0
[2025-11-28 06:20:27] 2025-11-28 05:20:26,967 [wrapper] pandaids: 6895387007
[2025-11-28 06:20:27] 2025-11-28 05:20:26,984 [wrapper] cleanup supervisor_pilot 1787126 1625073
[2025-11-28 06:20:27] 2025-11-28 05:20:26,986 [wrapper] Test setup, not cleaning
[2025-11-28 06:20:27] 2025-11-28 05:20:26,987 [wrapper] apfmon messages muted
[2025-11-28 06:20:27] 2025-11-28 05:20:26,989 [wrapper] ==== wrapper stdout END ====
[2025-11-28 06:20:27] 2025-11-28 05:20:26,991 [wrapper] ==== wrapper stderr END ====
[2025-11-28 06:20:27]  *** Error codes and diagnostics ***
[2025-11-28 06:20:27]     "exeErrorCode": 0,
[2025-11-28 06:20:27]     "exeErrorDiag": "",
[2025-11-28 06:20:27]     "pilotErrorCode": 0,
[2025-11-28 06:20:27]     "pilotErrorDiag": "",
[2025-11-28 06:20:27]  *** Listing of results directory ***
[2025-11-28 06:20:27] insgesamt 1310824
[2025-11-28 06:20:27] -rw-r--r-- 1 boinc boinc    576529 24. Nov 07:20 pilot3.tar.gz
[2025-11-28 06:20:27] -rw-r--r-- 1 boinc boinc      5112 24. Nov 07:28 queuedata.json
[2025-11-28 06:20:27] -rwx------ 1 boinc boinc     36292 24. Nov 07:29 runpilot2-wrapper.sh
[2025-11-28 06:20:27] -rw-r--r-- 1 boinc boinc       100 27. Nov 16:48 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 06:20:27] -rwxr-xr-x 1 boinc boinc      7986 27. Nov 16:48 run_atlas
[2025-11-28 06:20:27] -rw-r--r-- 1 boinc boinc       105 27. Nov 16:48 job.xml
[2025-11-28 06:20:27] -rw-r--r-- 2 boinc boinc     15847 27. Nov 16:48 start_atlas.sh
[2025-11-28 06:20:27] drwxrwx--x 2 boinc boinc      4096 27. Nov 16:48 shared
[2025-11-28 06:20:27] -rw-r--r-- 2 boinc boinc    590110 27. Nov 16:48 input.tar.gz
[2025-11-28 06:20:27] -rw-r--r-- 1 boinc boinc      6767 27. Nov 16:48 init_data.xml
[2025-11-28 06:20:27] -rw-r--r-- 2 boinc boinc 409141620 27. Nov 16:48 EVNT.47483658._001259.pool.root.1
[2025-11-28 06:20:27] -rw-r--r-- 1 boinc boinc         0 27. Nov 16:48 boinc_lockfile
[2025-11-28 06:20:27] -rw-r--r-- 1 boinc boinc      2785 27. Nov 16:48 pandaJob.out
[2025-11-28 06:20:27] -rw------- 1 boinc boinc        52 27. Nov 16:48 setup.sh.local
[2025-11-28 06:20:27] -rw------- 1 boinc boinc    991572 27. Nov 16:48 agis_schedconf.cvmfs.json
[2025-11-28 06:20:27] drwx------ 5 boinc boinc      4096 27. Nov 16:48 pilot3
[2025-11-28 06:20:27] -rw-r--r-- 1 boinc boinc       532 28. Nov 06:14 boinc_task_state.xml
[2025-11-28 06:20:27] -rw------- 1 boinc boinc 912261564 28. Nov 06:18 HITS.47556149._002458.pool.root.1
[2025-11-28 06:20:27] -rw------- 1 boinc boinc        95 28. Nov 06:19 pilot_heartbeat.json
[2025-11-28 06:20:27] -rw------- 1 boinc boinc      1028 28. Nov 06:19 memory_monitor_summary.json
[2025-11-28 06:20:27] -rw------- 1 boinc boinc   1516240 28. Nov 06:19 agis_ddmendpoints.agis.ALL.json
[2025-11-28 06:20:27] -rw------- 1 boinc boinc   1543473 28. Nov 06:19 log.47556149._002458.job.log.tgz.1
[2025-11-28 06:20:27] -rw------- 1 boinc boinc      8572 28. Nov 06:19 heartbeat.json
[2025-11-28 06:20:27] -rw-r--r-- 1 boinc boinc      8192 28. Nov 06:20 boinc_mmap_file
[2025-11-28 06:20:27] -rw-r--r-- 1 boinc boinc        29 28. Nov 06:20 wrapper_checkpoint.txt
[2025-11-28 06:20:27] -rw------- 1 boinc boinc      4896 28. Nov 06:20 pilotlog.txt
[2025-11-28 06:20:27] -rw------- 1 boinc boinc   6931435 28. Nov 06:20 log.47556149._002458.job.log.1
[2025-11-28 06:20:27] -rw------- 1 boinc boinc       353 28. Nov 06:20 output.list
[2025-11-28 06:20:27] -rw-r--r-- 1 boinc boinc       620 28. Nov 06:20 runtime_log
[2025-11-28 06:20:27] -rw------- 1 boinc boinc   8499200 28. Nov 06:20 result.tar.gz
[2025-11-28 06:20:27] -rw-r--r-- 1 boinc boinc      9304 28. Nov 06:20 runtime_log.err
[2025-11-28 06:20:27] -rw------- 1 boinc boinc       653 28. Nov 06:20 CQhMDm1Ffh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm1VLKDmojMpXm.diag
[2025-11-28 06:20:27] -rw-r--r-- 1 boinc boinc     20909 28. Nov 06:20 stderr.txt
[2025-11-28 06:20:27] HITS file was successfully produced:
[2025-11-28 06:20:27] -rw------- 1 boinc boinc 912261564 28. Nov 06:18 shared/HITS.pool.root.1
[2025-11-28 06:20:27]  *** Contents of shared directory: ***
[2025-11-28 06:20:27] insgesamt 1299344
[2025-11-28 06:20:27] -rw-r--r-- 2 boinc boinc     15847 27. Nov 16:48 start_atlas.sh
[2025-11-28 06:20:27] -rw-r--r-- 2 boinc boinc    590110 27. Nov 16:48 input.tar.gz
[2025-11-28 06:20:27] -rw-r--r-- 2 boinc boinc 409141620 27. Nov 16:48 ATLAS.root_0
[2025-11-28 06:20:27] -rw------- 1 boinc boinc 912261564 28. Nov 06:18 HITS.pool.root.1
[2025-11-28 06:20:27] -rw------- 1 boinc boinc   8499200 28. Nov 06:20 result.tar.gz
06:20:28 (1621366): run_atlas exited; CPU time 191430.099413
06:20:28 (1621366): called boinc_finish(0)

</stderr_txt>
]]>

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