Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
16:46:34 (12169): wrapper (7.7.26015): starting
16:46:34 (12169): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 16:46:34] Arguments: --nthreads 8
[2025-11-27 16:46:34] Threads: 8
[2025-11-27 16:46:34] Checking for CVMFS
[2025-11-27 16:46:35] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 16:46:35] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 16:46:35] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 16:46:37] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 16:46:37] 2.11.2.0 27391 89361 88360 153371 2 85 12874229 25165825 1288 130560 14 25782497 99.870 16976563 1419 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-27 16:46:37] CVMFS is ok
[2025-11-27 16:46:37] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 16:46:37] Checking for apptainer binary...
[2025-11-27 16:46:37] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 16:46:37] Running /usr/bin/apptainer --version
[2025-11-27 16:46:37] apptainer version 1.3.2-1.el7
[2025-11-27 16:46:37] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 16:46:48] cg-vwn417.simple-grid.lan
[2025-11-27 16:46:48] apptainer works
[2025-11-27 16:46:48] Set ATHENA_PROC_NUMBER=8
[2025-11-27 16:46:48] Set ATHENA_CORE_NUMBER=8
[2025-11-27 16:46:49] Starting ATLAS job with PandaID=6895883537
[2025-11-27 16:46:49] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 16:27:42]  *** The last 200 lines of the pilot log: ***
[2025-11-28 16:27:42] 2025-11-28 15:26:24,513 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 16:27:42] 2025-11-28 15:26:26,507 | INFO     | time since job start (84922s) is within the limit (172800.0s)
[2025-11-28 16:27:42] 2025-11-28 15:26:27,023 | INFO     | monitor loop #5707: job 0:6895883537 is in state 'finished'
[2025-11-28 16:27:42] 2025-11-28 15:26:27,023 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 16:27:42] 2025-11-28 15:26:28,514 | INFO     | time since job start (84924s) is within the limit (172800.0s)
[2025-11-28 16:27:42] 2025-11-28 15:26:29,531 | INFO     | monitor loop #5708: job 0:6895883537 is in state 'finished'
[2025-11-28 16:27:42] 2025-11-28 15:26:29,531 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 16:27:42] 2025-11-28 15:26:30,523 | INFO     | time since job start (84926s) is within the limit (172800.0s)
[2025-11-28 16:27:42] 2025-11-28 15:26:32,036 | INFO     | monitor loop #5709: job 0:6895883537 is in state 'finished'
[2025-11-28 16:27:42] 2025-11-28 15:26:32,036 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 16:27:42] 2025-11-28 15:26:32,530 | INFO     | time since job start (84928s) is within the limit (172800.0s)
[2025-11-28 16:27:42] 2025-11-28 15:26:34,537 | INFO     | time since job start (84930s) is within the limit (172800.0s)
[2025-11-28 16:27:42] 2025-11-28 15:26:34,543 | INFO     | monitor loop #5710: job 0:6895883537 is in state 'finished'
[2025-11-28 16:27:42] 2025-11-28 15:26:34,543 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 16:27:42] 2025-11-28 15:26:35,140 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-28 16:27:42] 2025-11-28 15:26:35,143 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-28 16:27:42] 2025-11-28 15:26:35,145 | INFO     | using path: /var/lib/boinc/slots/6/PanDA_Pilot-6895883537/memory_monitor_summary.json (trf name=prmon)
[2025-11-28 16:27:42] 2025-11-28 15:26:35,146 | INFO     | extracted standard info from prmon json
[2025-11-28 16:27:42] 2025-11-28 15:26:35,146 | INFO     | extracted standard memory fields from prmon json
[2025-11-28 16:27:42] 2025-11-28 15:26:35,146 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-28 16:27:42] 2025-11-28 15:26:35,184 | INFO     | fitting pss+swap vs Time
[2025-11-28 16:27:42] 2025-11-28 15:26:35,187 | INFO     | sum of square deviations: 820246654898.7706
[2025-11-28 16:27:42] 2025-11-28 15:26:35,303 | INFO     | sum of deviations: 3248635454309.847
[2025-11-28 16:27:42] 2025-11-28 15:26:35,303 | INFO     | mean x: 1764301320.0723066
[2025-11-28 16:27:42] 2025-11-28 15:26:35,303 | INFO     | mean y: 2861119.191612437
[2025-11-28 16:27:42] 2025-11-28 15:26:35,303 | INFO     | intersect: -6984758746.420535
[2025-11-28 16:27:42] 2025-11-28 15:26:35,305 | INFO     | chi2: 17.20598836744254
[2025-11-28 16:27:42] 2025-11-28 15:26:35,307 | INFO     | sum of square deviations: 811382838680.4979
[2025-11-28 16:27:42] 2025-11-28 15:26:35,381 | INFO     | sum of deviations: 3710886775186.8047
[2025-11-28 16:27:42] 2025-11-28 15:26:35,382 | INFO     | mean x: 1764301167.5761974
[2025-11-28 16:27:42] 2025-11-28 15:26:35,382 | INFO     | mean y: 2869070.57329463
[2025-11-28 16:27:42] 2025-11-28 15:26:35,382 | INFO     | intersect: -8066221817.338917
[2025-11-28 16:27:42] 2025-11-28 15:26:35,384 | INFO     | chi2: 14.002455485910714
[2025-11-28 16:27:42] 2025-11-28 15:26:35,384 | INFO     | current chi2=14.002455485910714 (change=18.618708865301834 %)
[2025-11-28 16:27:42] 2025-11-28 15:26:35,384 | INFO     | right removable region: 1377
[2025-11-28 16:27:42] 2025-11-28 15:26:35,386 | INFO     | sum of square deviations: 811381934050.4979
[2025-11-28 16:27:42] 2025-11-28 15:26:35,460 | INFO     | sum of deviations: 2708165926978.689
[2025-11-28 16:27:42] 2025-11-28 15:26:35,460 | INFO     | mean x: 1764301472.5761974
[2025-11-28 16:27:42] 2025-11-28 15:26:35,460 | INFO     | mean y: 2870415.264876633
[2025-11-28 16:27:42] 2025-11-28 15:26:35,460 | INFO     | intersect: -5885874369.939836
[2025-11-28 16:27:42] 2025-11-28 15:26:35,462 | INFO     | chi2: 13.204190878364022
[2025-11-28 16:27:42] 2025-11-28 15:26:35,462 | INFO     | current chi2=13.204190878364022 (change=23.258166887121615 %)
[2025-11-28 16:27:42] 2025-11-28 15:26:35,462 | INFO     | left removable region: 10
[2025-11-28 16:27:42] 2025-11-28 15:26:35,464 | INFO     | sum of square deviations: 792105917964.1564
[2025-11-28 16:27:42] 2025-11-28 15:26:35,541 | INFO     | sum of deviations: 2818371933546.23
[2025-11-28 16:27:42] 2025-11-28 15:26:35,541 | INFO     | mean x: 1764301442.0848575
[2025-11-28 16:27:42] 2025-11-28 15:26:35,542 | INFO     | mean y: 2888058.049743965
[2025-11-28 16:27:42] 2025-11-28 15:26:35,542 | INFO     | intersect: -6274628059.323982
[2025-11-28 16:27:42] 2025-11-28 15:26:35,543 | INFO     | chi2: 6.538892363357867
[2025-11-28 16:27:42] 2025-11-28 15:26:35,544 | INFO     | current memory leak: 3.56 B/s (using 1367 data points, chi2=6.54)
[2025-11-28 16:27:42] 2025-11-28 15:26:35,545 | INFO     | could have reported an average CPU frequency of 1999 MHz (47 samples)
[2025-11-28 16:27:42] 2025-11-28 15:26:35,546 | INFO     | ..............................
[2025-11-28 16:27:42] 2025-11-28 15:26:35,546 | INFO     | . Timing measurements:
[2025-11-28 16:27:42] 2025-11-28 15:26:35,546 | INFO     | . get job = 0 s
[2025-11-28 16:27:42] 2025-11-28 15:26:35,546 | INFO     | . initial setup = 11 s
[2025-11-28 16:27:42] 2025-11-28 15:26:35,546 | INFO     | . payload setup = 152 s
[2025-11-28 16:27:42] 2025-11-28 15:26:35,546 | INFO     | . stage-in = 0 s
[2025-11-28 16:27:42] 2025-11-28 15:26:35,546 | INFO     | . payload execution = 84490 s
[2025-11-28 16:27:42] 2025-11-28 15:26:35,546 | INFO     | . stage-out = 5 s
[2025-11-28 16:27:42] 2025-11-28 15:26:35,546 | INFO     | . log creation = 2 s
[2025-11-28 16:27:42] 2025-11-28 15:26:35,546 | INFO     | ..............................
[2025-11-28 16:27:42] 2025-11-28 15:26:35,780 | INFO     | 
[2025-11-28 16:27:42] 2025-11-28 15:26:35,780 | INFO     | job summary report
[2025-11-28 16:27:42] 2025-11-28 15:26:35,780 | INFO     | --------------------------------------------------
[2025-11-28 16:27:42] 2025-11-28 15:26:35,780 | INFO     | PanDA job id: 6895883537
[2025-11-28 16:27:42] 2025-11-28 15:26:35,780 | INFO     | task id: 47556149
[2025-11-28 16:27:42] 2025-11-28 15:26:35,780 | INFO     | errors: (none)
[2025-11-28 16:27:42] 2025-11-28 15:26:35,780 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-28 16:27:42] 2025-11-28 15:26:35,781 | INFO     | pilot state: finished 
[2025-11-28 16:27:42] 2025-11-28 15:26:35,781 | INFO     | transexitcode: 0
[2025-11-28 16:27:42] 2025-11-28 15:26:35,781 | INFO     | exeerrorcode: 0
[2025-11-28 16:27:42] 2025-11-28 15:26:35,781 | INFO     | exeerrordiag: 
[2025-11-28 16:27:42] 2025-11-28 15:26:35,781 | INFO     | exitcode: 0
[2025-11-28 16:27:42] 2025-11-28 15:26:35,781 | INFO     | exitmsg: OK
[2025-11-28 16:27:42] 2025-11-28 15:26:35,781 | INFO     | cpuconsumptiontime: 320837 s
[2025-11-28 16:27:42] 2025-11-28 15:26:35,781 | INFO     | nevents: 1000
[2025-11-28 16:27:42] 2025-11-28 15:26:35,781 | INFO     | neventsw: 0
[2025-11-28 16:27:42] 2025-11-28 15:26:35,781 | INFO     | pid: 22566
[2025-11-28 16:27:42] 2025-11-28 15:26:35,781 | INFO     | pgrp: 22566
[2025-11-28 16:27:42] 2025-11-28 15:26:35,781 | INFO     | corecount: 8
[2025-11-28 16:27:42] 2025-11-28 15:26:35,782 | INFO     | event service: False
[2025-11-28 16:27:42] 2025-11-28 15:26:35,782 | INFO     | sizes: {0: 2284088, 1: 2284343, 12: 2284343, 23: 2284371, 34: 2284399, 44: 2284427, 55: 2284583, 66: 2284611, 76: 2284639, 87: 2284695, 96: 2284985, 98: 2285293, 8
[2025-11-28 16:27:42] 2025-11-28 15:26:35,782 | INFO     | --------------------------------------------------
[2025-11-28 16:27:42] 2025-11-28 15:26:35,782 | INFO     | 
[2025-11-28 16:27:42] 2025-11-28 15:26:35,782 | INFO     | executing command: ls -lF /var/lib/boinc/slots/6
[2025-11-28 16:27:42] 2025-11-28 15:26:35,836 | INFO     | PID=15992 has CPU usage=2.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-28 16:27:42] 2025-11-28 15:26:35,836 | INFO     | .. there are 9 such processes running
[2025-11-28 16:27:42] 2025-11-28 15:26:36,245 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-28 16:27:42] 2025-11-28 15:26:36,245 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-28 16:27:42] 2025-11-28 15:26:36,246 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-28 16:27:42] 2025-11-28 15:26:36,246 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-28 16:27:42] 2025-11-28 15:26:36,246 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-28 16:27:42] 2025-11-28 15:26:36,246 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-28 16:27:42] 2025-11-28 15:26:36,246 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-28 16:27:42] 2025-11-28 15:26:36,246 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-28 16:27:42] 2025-11-28 15:26:36,246 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-28 16:27:42] 2025-11-28 15:26:36,246 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-28 16:27:42] 2025-11-28 15:26:36,246 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-28 16:27:42] 2025-11-28 15:26:36,247 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-28 16:27:42] 2025-11-28 15:26:36,247 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-28 16:27:42] 2025-11-28 15:26:36,247 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-28 16:27:42] 2025-11-28 15:26:36,247 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-28 16:27:42] 2025-11-28 15:26:36,247 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-28 16:27:42] 2025-11-28 15:26:36,247 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-28 16:27:42] 2025-11-28 15:26:36,247 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-28 16:27:42] 2025-11-28 15:26:36,247 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-28 16:27:42] 2025-11-28 15:26:36,247 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-28 16:27:42] 2025-11-28 15:26:36,247 | INFO     | job 6895883537 has completed (purged errors)
[2025-11-28 16:27:42] 2025-11-28 15:26:36,248 | INFO     | overall cleanup function is called
[2025-11-28 16:27:42] 2025-11-28 15:26:37,265 | INFO     | --- collectZombieJob: --- 10, [22566]
[2025-11-28 16:27:42] 2025-11-28 15:26:37,265 | INFO     | zombie collector waiting for pid 22566
[2025-11-28 16:27:42] 2025-11-28 15:26:37,265 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-28 16:27:42] 2025-11-28 15:26:37,265 | INFO     | collected zombie processes
[2025-11-28 16:27:42] 2025-11-28 15:26:37,265 | INFO     | will attempt to kill all subprocesses of pid=22566
[2025-11-28 16:27:42] 2025-11-28 15:26:37,402 | INFO     | process IDs to be killed: [22566] (in reverse order)
[2025-11-28 16:27:42] 2025-11-28 15:26:38,001 | WARNING  | found no corresponding commands to process id(s)
[2025-11-28 16:27:42] 2025-11-28 15:26:38,002 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-28 16:27:42] 2025-11-28 15:26:38,007 | INFO     | did not find any defunct processes belonging to 22566
[2025-11-28 16:27:42] 2025-11-28 15:26:38,010 | INFO     | did not find any defunct processes belonging to 22566
[2025-11-28 16:27:42] 2025-11-28 15:26:38,035 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 16:27:42] 2025-11-28 15:26:38,035 | INFO     | ready for new job
[2025-11-28 16:27:42] 2025-11-28 15:26:38,035 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 16:27:42] 2025-11-28 15:26:38,040 | INFO     | ***************************************
[2025-11-28 16:27:42] 2025-11-28 15:26:38,041 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 16:27:42] 2025-11-28 15:26:38,041 | INFO     | ***************************************
[2025-11-28 16:27:42] 2025-11-28 15:26:38,041 | INFO     | 
[2025-11-28 16:27:42] 2025-11-28 15:26:38,041 | INFO     | pilot is running in a VM
[2025-11-28 16:27:42] 2025-11-28 15:26:38,042 | INFO     | architecture information:
[2025-11-28 16:27:42] 2025-11-28 15:26:38,042 | INFO     | executing command: cat /etc/os-release
[2025-11-28 16:27:42] 2025-11-28 15:26:38,101 | INFO     | cat /etc/os-release:
[2025-11-28 16:27:42] NAME="CentOS Linux"
[2025-11-28 16:27:42] VERSION="7 (Core)"
[2025-11-28 16:27:42] ID="centos"
[2025-11-28 16:27:42] ID_LIKE="rhel fedora"
[2025-11-28 16:27:42] VERSION_ID="7"
[2025-11-28 16:27:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 16:27:42] ANSI_COLOR="0;31"
[2025-11-28 16:27:42] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 16:27:42] HOME_URL="https://www.centos.org/"
[2025-11-28 16:27:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 16:27:42] 
[2025-11-28 16:27:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 16:27:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 16:27:42] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 16:27:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 16:27:42] 
[2025-11-28 16:27:42] 2025-11-28 15:26:38,102 | INFO     | ***************************************
[2025-11-28 16:27:42] 2025-11-28 15:26:38,605 | INFO     | executing command: df -mP /var/lib/boinc/slots/6
[2025-11-28 16:27:42] 2025-11-28 15:26:38,903 | INFO     | sufficient remaining disk space (495052652544 B)
[2025-11-28 16:27:42] 2025-11-28 15:26:38,903 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 16:27:42] 2025-11-28 15:26:38,903 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 16:27:42] 2025-11-28 15:26:38,903 | INFO     | update_server=False
[2025-11-28 16:27:42] 2025-11-28 15:26:38,904 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 16:27:42] 2025-11-28 15:26:38,904 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 16:27:42] 2025-11-28 15:26:38,904 | INFO     | aborting loop
[2025-11-28 16:27:42] 2025-11-28 15:26:39,673 | INFO     | all data control threads have been joined
[2025-11-28 16:27:42] 2025-11-28 15:26:39,845 | INFO     | all payload control threads have been joined
[2025-11-28 16:27:42] 2025-11-28 15:26:39,910 | INFO     | [job] retrieve thread has finished
[2025-11-28 16:27:42] 2025-11-28 15:26:39,911 | INFO     | [job] job monitor thread has finished
[2025-11-28 16:27:42] 2025-11-28 15:26:39,929 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 16:27:42] 2025-11-28 15:26:39,961 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 16:27:42] 2025-11-28 15:26:39,996 | INFO     | [data] copytool_in thread has finished
[2025-11-28 16:27:42] 2025-11-28 15:26:40,089 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 16:27:42] 2025-11-28 15:26:40,296 | INFO     | [payload] failed_post thread has finished
[2025-11-28 16:27:42] 2025-11-28 15:26:40,301 | INFO     | [job] validate thread has finished
[2025-11-28 16:27:42] 2025-11-28 15:26:40,390 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 16:27:42] 2025-11-28 15:26:40,475 | INFO     | all job control threads have been joined
[2025-11-28 16:27:42] 2025-11-28 15:26:40,514 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 16:27:42] 2025-11-28 15:26:40,679 | INFO     | [data] control thread has finished
[2025-11-28 16:27:42] 2025-11-28 15:26:40,770 | INFO     | [payload] validate_post thread has finished
[2025-11-28 16:27:42] 2025-11-28 15:26:40,774 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 16:27:42] 2025-11-28 15:26:40,851 | INFO     | [payload] control thread has finished
[2025-11-28 16:27:42] 2025-11-28 15:26:41,047 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 16:27:42] 2025-11-28 15:26:41,481 | INFO     | [job] control thread has finished
[2025-11-28 16:27:42] 2025-11-28 15:26:41,780 | INFO     | [job] queue monitor thread has finished
[2025-11-28 16:27:42] 2025-11-28 15:26:41,936 | INFO     | [data] copytool_out thread has finished
[2025-11-28 16:27:42] 2025-11-28 15:26:45,055 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 16:27:42] 2025-11-28 15:27:08,031 | INFO     | PID=15992 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-28 16:27:42] 2025-11-28 15:27:08,031 | INFO     | .. there are 9 such processes running
[2025-11-28 16:27:42] 2025-11-28 15:27:08,031 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 16:27:42] 2025-11-28 15:27:08,031 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 16:27:42] 2025-11-28 15:27:08,031 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 16:27:42] 2025-11-28 15:27:31,908 | INFO     | [monitor] cgroup control has ended
[2025-11-28 16:27:42] 2025-11-28 15:27:32,881 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139721540953920)>', '<ExcThread(monitor, started 139721082644224)>']
[2025-11-28 16:27:42] 2025-11-28 15:27:33,177 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 16:27:42] 2025-11-28 15:27:33,177 | INFO     | [monitor] control thread has ended
[2025-11-28 16:27:42] 2025-11-28 15:27:37,907 | INFO     | all workflow threads have been joined
[2025-11-28 16:27:42] 2025-11-28 15:27:37,907 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 16:27:42] 2025-11-28 15:27:37,907 | INFO     | traces error code: 0
[2025-11-28 16:27:42] 2025-11-28 15:27:37,908 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 16:27:42] 2025-11-28 15:27:38,319 [wrapper] ==== pilot stdout END ====
[2025-11-28 16:27:42] 2025-11-28 15:27:38,445 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 16:27:42] 2025-11-28 15:27:38,545 [wrapper] pilotpid: 15992
[2025-11-28 16:27:42] 2025-11-28 15:27:38,659 [wrapper] Pilot exit status: 0
[2025-11-28 16:27:42] 2025-11-28 15:27:39,082 [wrapper] pandaids: 6895883537
[2025-11-28 16:27:42] 2025-11-28 15:27:39,661 [wrapper] cleanup supervisor_pilot 28458 15993
[2025-11-28 16:27:42] 2025-11-28 15:27:39,755 [wrapper] Test setup, not cleaning
[2025-11-28 16:27:42] 2025-11-28 15:27:39,806 [wrapper] apfmon messages muted
[2025-11-28 16:27:42] 2025-11-28 15:27:39,861 [wrapper] ==== wrapper stdout END ====
[2025-11-28 16:27:42] 2025-11-28 15:27:39,943 [wrapper] ==== wrapper stderr END ====
[2025-11-28 16:27:42]  *** Error codes and diagnostics ***
[2025-11-28 16:27:42]     "exeErrorCode": 0,
[2025-11-28 16:27:42]     "exeErrorDiag": "",
[2025-11-28 16:27:42]     "pilotErrorCode": 0,
[2025-11-28 16:27:42]     "pilotErrorDiag": "",
[2025-11-28 16:27:42]  *** Listing of results directory ***
[2025-11-28 16:27:42] total 1330876
[2025-11-28 16:27:42] -rw-r--r--. 1 boinc boinc    576529 Nov 24 17:06 pilot3.tar.gz
[2025-11-28 16:27:42] -rw-r--r--. 1 boinc boinc      5112 Nov 24 17:46 queuedata.json
[2025-11-28 16:27:42] -rwx------. 1 boinc boinc     36292 Nov 24 17:50 runpilot2-wrapper.sh
[2025-11-28 16:27:42] -rw-r--r--. 1 boinc boinc       100 Nov 27 16:46 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 16:27:42] -rwxr-xr-x. 1 boinc boinc      7986 Nov 27 16:46 run_atlas
[2025-11-28 16:27:42] -rw-r--r--. 1 boinc boinc       105 Nov 27 16:46 job.xml
[2025-11-28 16:27:42] -rw-r--r--. 1 boinc boinc      6391 Nov 27 16:46 init_data.xml
[2025-11-28 16:27:42] -rw-r--r--. 2 boinc boinc 410236686 Nov 27 16:46 EVNT.47483658._001390.pool.root.1
[2025-11-28 16:27:42] -rw-r--r--. 2 boinc boinc     15847 Nov 27 16:46 start_atlas.sh
[2025-11-28 16:27:42] drwxrwx--x. 2 boinc boinc        68 Nov 27 16:46 shared
[2025-11-28 16:27:42] -rw-r--r--. 2 boinc boinc    590105 Nov 27 16:46 input.tar.gz
[2025-11-28 16:27:42] -rw-r--r--. 1 boinc boinc         0 Nov 27 16:46 boinc_lockfile
[2025-11-28 16:27:42] -rw-r--r--. 1 boinc boinc      2786 Nov 27 16:46 pandaJob.out
[2025-11-28 16:27:42] -rw-------. 1 boinc boinc    991572 Nov 27 16:50 agis_schedconf.cvmfs.json
[2025-11-28 16:27:42] drwx------. 5 boinc boinc      4096 Nov 27 16:51 pilot3
[2025-11-28 16:27:42] -rw-r--r--. 1 boinc boinc       533 Nov 28 16:07 boinc_task_state.xml
[2025-11-28 16:27:42] -rw-------. 1 boinc boinc 921105675 Nov 28 16:23 HITS.47556149._003765.pool.root.1
[2025-11-28 16:27:42] -rw-------. 1 boinc boinc      1029 Nov 28 16:24 memory_monitor_summary.json
[2025-11-28 16:27:42] -rw-------. 1 boinc boinc   1516240 Nov 28 16:24 agis_ddmendpoints.agis.ALL.json
[2025-11-28 16:27:42] -rw-------. 1 boinc boinc   2463320 Nov 28 16:25 log.47556149._003765.job.log.tgz.1
[2025-11-28 16:27:42] -rw-------. 1 boinc boinc        95 Nov 28 16:26 pilot_heartbeat.json
[2025-11-28 16:27:42] -rw-------. 1 boinc boinc      8628 Nov 28 16:26 heartbeat.json
[2025-11-28 16:27:42] -rw-r--r--. 1 boinc boinc        29 Nov 28 16:27 wrapper_checkpoint.txt
[2025-11-28 16:27:42] -rw-r--r--. 1 boinc boinc      8192 Nov 28 16:27 boinc_mmap_file
[2025-11-28 16:27:42] -rw-------. 1 boinc boinc      4884 Nov 28 16:27 pilotlog.txt
[2025-11-28 16:27:42] -rw-------. 1 boinc boinc  11317296 Nov 28 16:27 log.47556149._003765.job.log.1
[2025-11-28 16:27:42] -rw-------. 1 boinc boinc       353 Nov 28 16:27 output.list
[2025-11-28 16:27:42] -rw-r--r--. 1 boinc boinc       620 Nov 28 16:27 runtime_log
[2025-11-28 16:27:42] -rw-------. 1 boinc boinc  13803520 Nov 28 16:27 result.tar.gz
[2025-11-28 16:27:42] -rw-r--r--. 1 boinc boinc      8817 Nov 28 16:27 runtime_log.err
[2025-11-28 16:27:42] -rw-------. 1 boinc boinc       662 Nov 28 16:27 jblLDmtwoh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmgmLKDmsA60um.diag
[2025-11-28 16:27:42] -rw-r--r--. 1 boinc boinc     21516 Nov 28 16:27 stderr.txt
[2025-11-28 16:27:42] HITS file was successfully produced:
[2025-11-28 16:27:42] -rw-------. 1 boinc boinc 921105675 Nov 28 16:23 shared/HITS.pool.root.1
[2025-11-28 16:27:42]  *** Contents of shared directory: ***
[2025-11-28 16:27:42] total 1314220
[2025-11-28 16:27:42] -rw-r--r--. 2 boinc boinc 410236686 Nov 27 16:46 ATLAS.root_0
[2025-11-28 16:27:42] -rw-r--r--. 2 boinc boinc     15847 Nov 27 16:46 start_atlas.sh
[2025-11-28 16:27:42] -rw-r--r--. 2 boinc boinc    590105 Nov 27 16:46 input.tar.gz
[2025-11-28 16:27:42] -rw-------. 1 boinc boinc 921105675 Nov 28 16:23 HITS.pool.root.1
[2025-11-28 16:27:42] -rw-------. 1 boinc boinc  13803520 Nov 28 16:27 result.tar.gz
16:27:44 (12169): run_atlas exited; CPU time 321405.860958
16:27:44 (12169): called boinc_finish(0)

</stderr_txt>
]]>

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