Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
23:31:00 (16480): wrapper (7.7.26015): starting
23:31:00 (16480): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 23:31:00] Arguments: --nthreads 8
[2025-11-27 23:31:00] Threads: 8
[2025-11-27 23:31:00] Checking for CVMFS
[2025-11-27 23:31:01] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 23:31:02] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 23:31:02] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 23:31:03] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 23:31:03] 2.11.2.0 2281 174218 133444 153387 3 84 19763963 25165824 1288 130560 12 56710586 99.891 29605017 2067 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-27 23:31:03] CVMFS is ok
[2025-11-27 23:31:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 23:31:03] Checking for apptainer binary...
[2025-11-27 23:31:03] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 23:31:03] Running /usr/bin/apptainer --version
[2025-11-27 23:31:03] apptainer version 1.3.2-1.el7
[2025-11-27 23:31:03] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 23:31:22] cg-vwn445.simple-grid.lan
[2025-11-27 23:31:22] apptainer works
[2025-11-27 23:31:22] Set ATHENA_PROC_NUMBER=8
[2025-11-27 23:31:22] Set ATHENA_CORE_NUMBER=8
[2025-11-27 23:31:22] Starting ATLAS job with PandaID=6895674866
[2025-11-27 23:31:22] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/16 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 23:04:32]  *** The last 200 lines of the pilot log: ***
[2025-11-28 23:04:32] 2025-11-28 22:03:28,092 | INFO     | PID=20260 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-28 23:04:32] 2025-11-28 22:03:28,092 | INFO     | .. there are 9 such processes running
[2025-11-28 23:04:32] 2025-11-28 22:03:29,099 | INFO     | time since job start (84514s) is within the limit (172800.0s)
[2025-11-28 23:04:32] 2025-11-28 22:03:29,456 | INFO     | monitor loop #5707: job 0:6895674866 is in state 'finished'
[2025-11-28 23:04:32] 2025-11-28 22:03:29,456 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 23:04:32] 2025-11-28 22:03:31,106 | INFO     | time since job start (84516s) is within the limit (172800.0s)
[2025-11-28 23:04:32] 2025-11-28 22:03:31,961 | INFO     | monitor loop #5708: job 0:6895674866 is in state 'finished'
[2025-11-28 23:04:32] 2025-11-28 22:03:31,961 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 23:04:32] 2025-11-28 22:03:33,113 | INFO     | time since job start (84518s) is within the limit (172800.0s)
[2025-11-28 23:04:32] 2025-11-28 22:03:34,465 | INFO     | monitor loop #5709: job 0:6895674866 is in state 'finished'
[2025-11-28 23:04:32] 2025-11-28 22:03:34,465 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 23:04:32] 2025-11-28 22:03:35,120 | INFO     | time since job start (84520s) is within the limit (172800.0s)
[2025-11-28 23:04:32] 2025-11-28 22:03:36,972 | INFO     | monitor loop #5710: job 0:6895674866 is in state 'finished'
[2025-11-28 23:04:32] 2025-11-28 22:03:36,972 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 23:04:32] 2025-11-28 22:03:37,127 | INFO     | time since job start (84522s) is within the limit (172800.0s)
[2025-11-28 23:04:32] 2025-11-28 22:03:38,901 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-28 23:04:32] 2025-11-28 22:03:38,902 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-28 23:04:32] 2025-11-28 22:03:38,904 | INFO     | using path: /var/lib/boinc/slots/16/PanDA_Pilot-6895674866/memory_monitor_summary.json (trf name=prmon)
[2025-11-28 23:04:32] 2025-11-28 22:03:38,904 | INFO     | extracted standard info from prmon json
[2025-11-28 23:04:32] 2025-11-28 22:03:38,905 | INFO     | extracted standard memory fields from prmon json
[2025-11-28 23:04:32] 2025-11-28 22:03:38,905 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-28 23:04:32] 2025-11-28 22:03:38,942 | INFO     | fitting pss+swap vs Time
[2025-11-28 23:04:32] 2025-11-28 22:03:38,944 | INFO     | sum of square deviations: 807855633330.5585
[2025-11-28 23:04:32] 2025-11-28 22:03:39,030 | INFO     | sum of deviations: 2993159078705.987
[2025-11-28 23:04:32] 2025-11-28 22:03:39,030 | INFO     | mean x: 1764325327.5988371
[2025-11-28 23:04:32] 2025-11-28 22:03:39,031 | INFO     | mean y: 2831871.492732558
[2025-11-28 23:04:32] 2025-11-28 22:03:39,031 | INFO     | intersect: -6534111307.72569
[2025-11-28 23:04:32] 2025-11-28 22:03:39,032 | INFO     | chi2: 25.39689356459557
[2025-11-28 23:04:32] 2025-11-28 22:03:39,035 | INFO     | sum of square deviations: 799081492754.4985
[2025-11-28 23:04:32] 2025-11-28 22:03:39,112 | INFO     | sum of deviations: 3441604796862.428
[2025-11-28 23:04:32] 2025-11-28 22:03:39,113 | INFO     | mean x: 1764325175.1028447
[2025-11-28 23:04:32] 2025-11-28 22:03:39,113 | INFO     | mean y: 2839664.762946754
[2025-11-28 23:04:32] 2025-11-28 22:03:39,113 | INFO     | intersect: -7596022329.810397
[2025-11-28 23:04:32] 2025-11-28 22:03:39,115 | INFO     | chi2: 22.21853540914527
[2025-11-28 23:04:32] 2025-11-28 22:03:39,115 | INFO     | current chi2=22.21853540914527 (change=12.514751646166184 %)
[2025-11-28 23:04:32] 2025-11-28 22:03:39,115 | INFO     | right removable region: 1370
[2025-11-28 23:04:32] 2025-11-28 22:03:39,117 | INFO     | sum of square deviations: 799080570434.4983
[2025-11-28 23:04:32] 2025-11-28 22:03:39,162 | INFO     | time since job start (84524s) is within the limit (172800.0s)
[2025-11-28 23:04:32] 2025-11-28 22:03:39,173 | INFO     | sum of deviations: 2406779837333.4785
[2025-11-28 23:04:32] 2025-11-28 22:03:39,173 | INFO     | mean x: 1764325480.1028447
[2025-11-28 23:04:32] 2025-11-28 22:03:39,173 | INFO     | mean y: 2842062.0320933624
[2025-11-28 23:04:32] 2025-11-28 22:03:39,173 | INFO     | intersect: -5311194030.343794
[2025-11-28 23:04:32] 2025-11-28 22:03:39,175 | INFO     | chi2: 20.513759311893097
[2025-11-28 23:04:32] 2025-11-28 22:03:39,175 | INFO     | current chi2=20.513759311893097 (change=19.227289511933794 %)
[2025-11-28 23:04:32] 2025-11-28 22:03:39,175 | INFO     | left removable region: 10
[2025-11-28 23:04:32] 2025-11-28 22:03:39,177 | INFO     | sum of square deviations: 780000677003.012
[2025-11-28 23:04:32] 2025-11-28 22:03:39,230 | INFO     | sum of deviations: 2472878961795.978
[2025-11-28 23:04:32] 2025-11-28 22:03:39,230 | INFO     | mean x: 1764325449.6117647
[2025-11-28 23:04:32] 2025-11-28 22:03:39,230 | INFO     | mean y: 2860641.401470588
[2025-11-28 23:04:32] 2025-11-28 22:03:39,230 | INFO     | intersect: -5590677178.168032
[2025-11-28 23:04:32] 2025-11-28 22:03:39,232 | INFO     | chi2: 12.951636453514633
[2025-11-28 23:04:32] 2025-11-28 22:03:39,232 | INFO     | current memory leak: 3.17 B/s (using 1360 data points, chi2=12.95)
[2025-11-28 23:04:32] 2025-11-28 22:03:39,234 | INFO     | could have reported an average CPU frequency of 1999 MHz (47 samples)
[2025-11-28 23:04:32] 2025-11-28 22:03:39,234 | INFO     | ..............................
[2025-11-28 23:04:32] 2025-11-28 22:03:39,234 | INFO     | . Timing measurements:
[2025-11-28 23:04:32] 2025-11-28 22:03:39,234 | INFO     | . get job = 0 s
[2025-11-28 23:04:32] 2025-11-28 22:03:39,234 | INFO     | . initial setup = 5 s
[2025-11-28 23:04:32] 2025-11-28 22:03:39,234 | INFO     | . payload setup = 152 s
[2025-11-28 23:04:32] 2025-11-28 22:03:39,235 | INFO     | . stage-in = 0 s
[2025-11-28 23:04:32] 2025-11-28 22:03:39,235 | INFO     | . payload execution = 84080 s
[2025-11-28 23:04:32] 2025-11-28 22:03:39,235 | INFO     | . stage-out = 8 s
[2025-11-28 23:04:32] 2025-11-28 22:03:39,235 | INFO     | . log creation = 2 s
[2025-11-28 23:04:32] 2025-11-28 22:03:39,235 | INFO     | ..............................
[2025-11-28 23:04:32] 2025-11-28 22:03:39,369 | INFO     | 
[2025-11-28 23:04:32] 2025-11-28 22:03:39,369 | INFO     | job summary report
[2025-11-28 23:04:32] 2025-11-28 22:03:39,369 | INFO     | --------------------------------------------------
[2025-11-28 23:04:32] 2025-11-28 22:03:39,369 | INFO     | PanDA job id: 6895674866
[2025-11-28 23:04:32] 2025-11-28 22:03:39,369 | INFO     | task id: 47556149
[2025-11-28 23:04:32] 2025-11-28 22:03:39,370 | INFO     | errors: (none)
[2025-11-28 23:04:32] 2025-11-28 22:03:39,370 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-28 23:04:32] 2025-11-28 22:03:39,370 | INFO     | pilot state: finished 
[2025-11-28 23:04:32] 2025-11-28 22:03:39,370 | INFO     | transexitcode: 0
[2025-11-28 23:04:32] 2025-11-28 22:03:39,370 | INFO     | exeerrorcode: 0
[2025-11-28 23:04:32] 2025-11-28 22:03:39,370 | INFO     | exeerrordiag: 
[2025-11-28 23:04:32] 2025-11-28 22:03:39,370 | INFO     | exitcode: 0
[2025-11-28 23:04:32] 2025-11-28 22:03:39,370 | INFO     | exitmsg: OK
[2025-11-28 23:04:32] 2025-11-28 22:03:39,370 | INFO     | cpuconsumptiontime: 315221 s
[2025-11-28 23:04:32] 2025-11-28 22:03:39,370 | INFO     | nevents: 1000
[2025-11-28 23:04:32] 2025-11-28 22:03:39,370 | INFO     | neventsw: 0
[2025-11-28 23:04:32] 2025-11-28 22:03:39,370 | INFO     | pid: 26822
[2025-11-28 23:04:32] 2025-11-28 22:03:39,371 | INFO     | pgrp: 26822
[2025-11-28 23:04:32] 2025-11-28 22:03:39,371 | INFO     | corecount: 8
[2025-11-28 23:04:32] 2025-11-28 22:03:39,371 | INFO     | event service: False
[2025-11-28 23:04:32] 2025-11-28 22:03:39,371 | INFO     | sizes: {0: 2284139, 1: 2284338, 12: 2284338, 22: 2284366, 33: 2284394, 44: 2284450, 55: 2284606, 65: 2284634, 76: 2284662, 87: 2284718, 88: 2285008, 97: 2285316, 8
[2025-11-28 23:04:32] 2025-11-28 22:03:39,371 | INFO     | --------------------------------------------------
[2025-11-28 23:04:32] 2025-11-28 22:03:39,371 | INFO     | 
[2025-11-28 23:04:32] 2025-11-28 22:03:39,371 | INFO     | executing command: ls -lF /var/lib/boinc/slots/16
[2025-11-28 23:04:32] 2025-11-28 22:03:39,758 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-28 23:04:32] 2025-11-28 22:03:39,758 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-28 23:04:32] 2025-11-28 22:03:39,758 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-28 23:04:32] 2025-11-28 22:03:39,758 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-28 23:04:32] 2025-11-28 22:03:39,758 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-28 23:04:32] 2025-11-28 22:03:39,758 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-28 23:04:32] 2025-11-28 22:03:39,758 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-28 23:04:32] 2025-11-28 22:03:39,758 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-28 23:04:32] 2025-11-28 22:03:39,759 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-28 23:04:32] 2025-11-28 22:03:39,759 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-28 23:04:32] 2025-11-28 22:03:39,759 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-28 23:04:32] 2025-11-28 22:03:39,759 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-28 23:04:33] 2025-11-28 22:03:39,759 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-28 23:04:33] 2025-11-28 22:03:39,759 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-28 23:04:33] 2025-11-28 22:03:39,759 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-28 23:04:33] 2025-11-28 22:03:39,759 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-28 23:04:33] 2025-11-28 22:03:39,759 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-28 23:04:33] 2025-11-28 22:03:39,759 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-28 23:04:33] 2025-11-28 22:03:39,759 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-28 23:04:33] 2025-11-28 22:03:39,760 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-28 23:04:33] 2025-11-28 22:03:39,760 | INFO     | job 6895674866 has completed (purged errors)
[2025-11-28 23:04:33] 2025-11-28 22:03:39,760 | INFO     | overall cleanup function is called
[2025-11-28 23:04:33] 2025-11-28 22:03:40,775 | INFO     | --- collectZombieJob: --- 10, [26822]
[2025-11-28 23:04:33] 2025-11-28 22:03:40,775 | INFO     | zombie collector waiting for pid 26822
[2025-11-28 23:04:33] 2025-11-28 22:03:40,775 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-28 23:04:33] 2025-11-28 22:03:40,775 | INFO     | collected zombie processes
[2025-11-28 23:04:33] 2025-11-28 22:03:40,776 | INFO     | will attempt to kill all subprocesses of pid=26822
[2025-11-28 23:04:33] 2025-11-28 22:03:40,866 | INFO     | process IDs to be killed: [26822] (in reverse order)
[2025-11-28 23:04:33] 2025-11-28 22:03:41,520 | WARNING  | found no corresponding commands to process id(s)
[2025-11-28 23:04:33] 2025-11-28 22:03:41,520 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-28 23:04:33] 2025-11-28 22:03:41,523 | INFO     | did not find any defunct processes belonging to 26822
[2025-11-28 23:04:33] 2025-11-28 22:03:41,525 | INFO     | did not find any defunct processes belonging to 26822
[2025-11-28 23:04:33] 2025-11-28 22:03:41,573 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 23:04:33] 2025-11-28 22:03:41,573 | INFO     | ready for new job
[2025-11-28 23:04:33] 2025-11-28 22:03:41,574 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 23:04:33] 2025-11-28 22:03:41,578 | INFO     | ***************************************
[2025-11-28 23:04:33] 2025-11-28 22:03:41,579 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 23:04:33] 2025-11-28 22:03:41,579 | INFO     | ***************************************
[2025-11-28 23:04:33] 2025-11-28 22:03:41,579 | INFO     | 
[2025-11-28 23:04:33] 2025-11-28 22:03:41,579 | INFO     | pilot is running in a VM
[2025-11-28 23:04:33] 2025-11-28 22:03:41,580 | INFO     | architecture information:
[2025-11-28 23:04:33] 2025-11-28 22:03:41,591 | INFO     | executing command: cat /etc/os-release
[2025-11-28 23:04:33] 2025-11-28 22:03:41,827 | INFO     | cat /etc/os-release:
[2025-11-28 23:04:33] NAME="CentOS Linux"
[2025-11-28 23:04:33] VERSION="7 (Core)"
[2025-11-28 23:04:33] ID="centos"
[2025-11-28 23:04:33] ID_LIKE="rhel fedora"
[2025-11-28 23:04:33] VERSION_ID="7"
[2025-11-28 23:04:33] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 23:04:33] ANSI_COLOR="0;31"
[2025-11-28 23:04:33] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 23:04:33] HOME_URL="https://www.centos.org/"
[2025-11-28 23:04:33] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 23:04:33] 
[2025-11-28 23:04:33] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 23:04:33] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 23:04:33] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 23:04:33] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 23:04:33] 
[2025-11-28 23:04:33] 2025-11-28 22:03:41,828 | INFO     | ***************************************
[2025-11-28 23:04:33] 2025-11-28 22:03:42,331 | INFO     | executing command: df -mP /var/lib/boinc/slots/16
[2025-11-28 23:04:33] 2025-11-28 22:03:42,554 | INFO     | sufficient remaining disk space (494547238912 B)
[2025-11-28 23:04:33] 2025-11-28 22:03:42,554 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 23:04:33] 2025-11-28 22:03:42,554 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 23:04:33] 2025-11-28 22:03:42,554 | INFO     | update_server=False
[2025-11-28 23:04:33] 2025-11-28 22:03:42,554 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 23:04:33] 2025-11-28 22:03:42,800 | INFO     | all data control threads have been joined
[2025-11-28 23:04:33] 2025-11-28 22:03:42,935 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 23:04:33] 2025-11-28 22:03:42,995 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 23:04:33] 2025-11-28 22:03:42,995 | INFO     | aborting loop
[2025-11-28 23:04:33] 2025-11-28 22:03:43,312 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 23:04:33] 2025-11-28 22:03:43,466 | INFO     | all payload control threads have been joined
[2025-11-28 23:04:33] 2025-11-28 22:03:43,560 | INFO     | [job] retrieve thread has finished
[2025-11-28 23:04:33] 2025-11-28 22:03:43,655 | INFO     | all job control threads have been joined
[2025-11-28 23:04:33] 2025-11-28 22:03:43,807 | INFO     | [data] control thread has finished
[2025-11-28 23:04:33] 2025-11-28 22:03:43,842 | INFO     | [data] copytool_in thread has finished
[2025-11-28 23:04:33] 2025-11-28 22:03:44,001 | INFO     | [job] job monitor thread has finished
[2025-11-28 23:04:33] 2025-11-28 22:03:44,122 | INFO     | [payload] validate_post thread has finished
[2025-11-28 23:04:33] 2025-11-28 22:03:44,362 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 23:04:33] 2025-11-28 22:03:44,472 | INFO     | [payload] control thread has finished
[2025-11-28 23:04:33] 2025-11-28 22:03:44,593 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 23:04:33] 2025-11-28 22:03:44,661 | INFO     | [job] control thread has finished
[2025-11-28 23:04:33] 2025-11-28 22:03:44,663 | INFO     | [job] validate thread has finished
[2025-11-28 23:04:33] 2025-11-28 22:03:44,667 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 23:04:33] 2025-11-28 22:03:44,911 | INFO     | [payload] failed_post thread has finished
[2025-11-28 23:04:33] 2025-11-28 22:03:44,912 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 23:04:33] 2025-11-28 22:03:44,992 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 23:04:33] 2025-11-28 22:03:45,320 | INFO     | [data] copytool_out thread has finished
[2025-11-28 23:04:33] 2025-11-28 22:03:45,368 | INFO     | [job] queue monitor thread has finished
[2025-11-28 23:04:33] 2025-11-28 22:03:46,944 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 23:04:33] 2025-11-28 22:04:12,336 | INFO     | PID=20260 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-28 23:04:33] 2025-11-28 22:04:12,337 | INFO     | .. there are 9 such processes running
[2025-11-28 23:04:33] 2025-11-28 22:04:12,337 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 23:04:33] 2025-11-28 22:04:12,337 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 23:04:33] 2025-11-28 22:04:12,337 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 23:04:33] 2025-11-28 22:04:22,850 | INFO     | [monitor] cgroup control has ended
[2025-11-28 23:04:33] 2025-11-28 22:04:24,467 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140166563678016)>', '<ExcThread(monitor, started 140166336759552)>']
[2025-11-28 23:04:33] 2025-11-28 22:04:25,415 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 23:04:33] 2025-11-28 22:04:25,415 | INFO     | [monitor] control thread has ended
[2025-11-28 23:04:33] 2025-11-28 22:04:29,493 | INFO     | all workflow threads have been joined
[2025-11-28 23:04:33] 2025-11-28 22:04:29,493 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 23:04:33] 2025-11-28 22:04:29,494 | INFO     | traces error code: 0
[2025-11-28 23:04:33] 2025-11-28 22:04:29,494 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 23:04:33] 2025-11-28 22:04:29,728 [wrapper] ==== pilot stdout END ====
[2025-11-28 23:04:33] 2025-11-28 22:04:29,741 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 23:04:33] 2025-11-28 22:04:29,757 [wrapper] pilotpid: 20260
[2025-11-28 23:04:33] 2025-11-28 22:04:29,775 [wrapper] Pilot exit status: 0
[2025-11-28 23:04:33] 2025-11-28 22:04:29,960 [wrapper] pandaids: 6895674866
[2025-11-28 23:04:33] 2025-11-28 22:04:30,909 [wrapper] cleanup supervisor_pilot 27932 20261
[2025-11-28 23:04:33] 2025-11-28 22:04:31,001 [wrapper] Test setup, not cleaning
[2025-11-28 23:04:33] 2025-11-28 22:04:31,096 [wrapper] apfmon messages muted
[2025-11-28 23:04:33] 2025-11-28 22:04:31,123 [wrapper] ==== wrapper stdout END ====
[2025-11-28 23:04:33] 2025-11-28 22:04:31,175 [wrapper] ==== wrapper stderr END ====
[2025-11-28 23:04:33]  *** Error codes and diagnostics ***
[2025-11-28 23:04:33]     "exeErrorCode": 0,
[2025-11-28 23:04:33]     "exeErrorDiag": "",
[2025-11-28 23:04:33]     "pilotErrorCode": 0,
[2025-11-28 23:04:33]     "pilotErrorDiag": "",
[2025-11-28 23:04:33]  *** Listing of results directory ***
[2025-11-28 23:04:33] total 1328172
[2025-11-28 23:04:33] -rw-r--r--. 1 boinc boinc    576529 Nov 24 16:13 pilot3.tar.gz
[2025-11-28 23:04:33] -rw-r--r--. 1 boinc boinc      5112 Nov 24 16:36 queuedata.json
[2025-11-28 23:04:33] -rwx------. 1 boinc boinc     36292 Nov 24 16:36 runpilot2-wrapper.sh
[2025-11-28 23:04:33] -rw-r--r--. 1 boinc boinc       100 Nov 27 23:31 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 23:04:33] -rwxr-xr-x. 1 boinc boinc      7986 Nov 27 23:31 run_atlas
[2025-11-28 23:04:33] -rw-r--r--. 1 boinc boinc       105 Nov 27 23:31 job.xml
[2025-11-28 23:04:33] -rw-r--r--. 1 boinc boinc      6393 Nov 27 23:31 init_data.xml
[2025-11-28 23:04:33] -rw-r--r--. 2 boinc boinc 410322706 Nov 27 23:31 EVNT.47483658._001368.pool.root.1
[2025-11-28 23:04:33] -rw-r--r--. 2 boinc boinc     15847 Nov 27 23:31 start_atlas.sh
[2025-11-28 23:04:33] drwxrwx--x. 2 boinc boinc        68 Nov 27 23:31 shared
[2025-11-28 23:04:33] -rw-r--r--. 2 boinc boinc    590108 Nov 27 23:31 input.tar.gz
[2025-11-28 23:04:33] -rw-r--r--. 1 boinc boinc         0 Nov 27 23:31 boinc_lockfile
[2025-11-28 23:04:33] -rw-r--r--. 1 boinc boinc      2783 Nov 27 23:31 pandaJob.out
[2025-11-28 23:04:33] -rw-------. 1 boinc boinc    991532 Nov 27 23:34 agis_schedconf.cvmfs.json
[2025-11-28 23:04:33] drwx------. 5 boinc boinc      4096 Nov 27 23:34 pilot3
[2025-11-28 23:04:33] -rw-r--r--. 1 boinc boinc       533 Nov 28 22:34 boinc_task_state.xml
[2025-11-28 23:04:33] -rw-------. 1 boinc boinc 918333073 Nov 28 23:00 HITS.47556149._003541.pool.root.1
[2025-11-28 23:04:33] -rw-------. 1 boinc boinc      1033 Nov 28 23:01 memory_monitor_summary.json
[2025-11-28 23:04:33] -rw-------. 1 boinc boinc   1516240 Nov 28 23:02 agis_ddmendpoints.agis.ALL.json
[2025-11-28 23:04:33] -rw-------. 1 boinc boinc   2460053 Nov 28 23:02 log.47556149._003541.job.log.tgz.1
[2025-11-28 23:04:33] -rw-------. 1 boinc boinc        95 Nov 28 23:03 pilot_heartbeat.json
[2025-11-28 23:04:33] -rw-------. 1 boinc boinc      8622 Nov 28 23:03 heartbeat.json
[2025-11-28 23:04:33] -rw-r--r--. 1 boinc boinc        29 Nov 28 23:04 wrapper_checkpoint.txt
[2025-11-28 23:04:33] -rw-r--r--. 1 boinc boinc      8192 Nov 28 23:04 boinc_mmap_file
[2025-11-28 23:04:33] -rw-------. 1 boinc boinc      4885 Nov 28 23:04 pilotlog.txt
[2025-11-28 23:04:33] -rw-------. 1 boinc boinc  11283041 Nov 28 23:04 log.47556149._003541.job.log.1
[2025-11-28 23:04:33] -rw-------. 1 boinc boinc       353 Nov 28 23:04 output.list
[2025-11-28 23:04:33] -rw-r--r--. 1 boinc boinc       620 Nov 28 23:04 runtime_log
[2025-11-28 23:04:33] -rw-------. 1 boinc boinc  13762560 Nov 28 23:04 result.tar.gz
[2025-11-28 23:04:33] -rw-r--r--. 1 boinc boinc      8833 Nov 28 23:04 runtime_log.err
[2025-11-28 23:04:33] -rw-------. 1 boinc boinc       662 Nov 28 23:04 4yEMDm2mnh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmC6IKDmOH0kVo.diag
[2025-11-28 23:04:33] -rw-r--r--. 1 boinc boinc     21503 Nov 28 23:04 stderr.txt
[2025-11-28 23:04:33] HITS file was successfully produced:
[2025-11-28 23:04:33] -rw-------. 1 boinc boinc 918333073 Nov 28 23:00 shared/HITS.pool.root.1
[2025-11-28 23:04:33]  *** Contents of shared directory: ***
[2025-11-28 23:04:33] total 1311556
[2025-11-28 23:04:33] -rw-r--r--. 2 boinc boinc 410322706 Nov 27 23:31 ATLAS.root_0
[2025-11-28 23:04:33] -rw-r--r--. 2 boinc boinc     15847 Nov 27 23:31 start_atlas.sh
[2025-11-28 23:04:33] -rw-r--r--. 2 boinc boinc    590108 Nov 27 23:31 input.tar.gz
[2025-11-28 23:04:33] -rw-------. 1 boinc boinc 918333073 Nov 28 23:00 HITS.pool.root.1
[2025-11-28 23:04:33] -rw-------. 1 boinc boinc  13762560 Nov 28 23:04 result.tar.gz
23:04:34 (16480): run_atlas exited; CPU time 315789.967986
23:04:34 (16480): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN