Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
12:53:27 (15676): wrapper (7.7.26015): starting
12:53:27 (15676): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 12:53:27] Arguments: --nthreads 8
[2025-11-27 12:53:27] Threads: 8
[2025-11-27 12:53:27] Checking for CVMFS
[2025-11-27 12:53:28] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 12:53:29] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 12:53:29] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 12:53:30] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 12:53:30] 2.11.2.0 15981 191745 138004 153362 2 85 21809168 25165824 1288 130560 12 67731966 99.882 36670610 2358 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-27 12:53:30] CVMFS is ok
[2025-11-27 12:53:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 12:53:30] Checking for apptainer binary...
[2025-11-27 12:53:30] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 12:53:30] Running /usr/bin/apptainer --version
[2025-11-27 12:53:30] apptainer version 1.3.2-1.el7
[2025-11-27 12:53:30] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 12:53:49] cg-vwn479.simple-grid.lan
[2025-11-27 12:53:49] apptainer works
[2025-11-27 12:53:49] Set ATHENA_PROC_NUMBER=8
[2025-11-27 12:53:49] Set ATHENA_CORE_NUMBER=8
[2025-11-27 12:53:49] Starting ATLAS job with PandaID=6891597062
[2025-11-27 12:53:49] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/12 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 10:09:10]  *** The last 200 lines of the pilot log: ***
[2025-11-28 10:09:10] 2025-11-28 09:08:22,118 | INFO     | time since job start (76248s) is within the limit (172800.0s)
[2025-11-28 10:09:10] 2025-11-28 09:08:22,527 | INFO     | monitor loop #5176: job 0:6891597062 is in state 'finished'
[2025-11-28 10:09:10] 2025-11-28 09:08:22,528 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 10:09:10] 2025-11-28 09:08:24,132 | INFO     | time since job start (76250s) is within the limit (172800.0s)
[2025-11-28 10:09:10] 2025-11-28 09:08:25,034 | INFO     | monitor loop #5177: job 0:6891597062 is in state 'finished'
[2025-11-28 10:09:10] 2025-11-28 09:08:25,035 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 10:09:10] 2025-11-28 09:08:26,140 | INFO     | time since job start (76252s) is within the limit (172800.0s)
[2025-11-28 10:09:10] 2025-11-28 09:08:27,539 | INFO     | monitor loop #5178: job 0:6891597062 is in state 'finished'
[2025-11-28 10:09:10] 2025-11-28 09:08:27,540 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 10:09:10] 2025-11-28 09:08:28,150 | INFO     | time since job start (76254s) is within the limit (172800.0s)
[2025-11-28 10:09:10] 2025-11-28 09:08:30,046 | INFO     | monitor loop #5179: job 0:6891597062 is in state 'finished'
[2025-11-28 10:09:10] 2025-11-28 09:08:30,047 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 10:09:10] 2025-11-28 09:08:30,159 | INFO     | time since job start (76256s) is within the limit (172800.0s)
[2025-11-28 10:09:10] 2025-11-28 09:08:32,168 | INFO     | time since job start (76258s) is within the limit (172800.0s)
[2025-11-28 10:09:10] 2025-11-28 09:08:32,338 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-28 10:09:10] 2025-11-28 09:08:32,339 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 2249.998
[2025-11-28 10:09:10] 2025-11-28 09:08:32,341 | INFO     | using path: /var/lib/boinc/slots/12/PanDA_Pilot-6891597062/memory_monitor_summary.json (trf name=prmon)
[2025-11-28 10:09:10] 2025-11-28 09:08:32,342 | INFO     | extracted standard info from prmon json
[2025-11-28 10:09:10] 2025-11-28 09:08:32,342 | INFO     | extracted standard memory fields from prmon json
[2025-11-28 10:09:10] 2025-11-28 09:08:32,342 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-28 10:09:10] 2025-11-28 09:08:32,368 | INFO     | fitting pss+swap vs Time
[2025-11-28 10:09:10] 2025-11-28 09:08:32,370 | INFO     | sum of square deviations: 591211575193.4242
[2025-11-28 10:09:10] 2025-11-28 09:08:32,433 | INFO     | sum of deviations: 2409093717120.224
[2025-11-28 10:09:10] 2025-11-28 09:08:32,434 | INFO     | mean x: 1764282963.5217743
[2025-11-28 10:09:10] 2025-11-28 09:08:32,434 | INFO     | mean y: 2834942.1217741934
[2025-11-28 10:09:10] 2025-11-28 09:08:32,434 | INFO     | intersect: -7186339257.067401
[2025-11-28 10:09:10] 2025-11-28 09:08:32,435 | INFO     | chi2: 26.174137886296805
[2025-11-28 10:09:10] 2025-11-28 09:08:32,437 | INFO     | sum of square deviations: 584089000163.1708
[2025-11-28 10:09:10] 2025-11-28 09:08:32,500 | INFO     | sum of deviations: 2823400128326.0083
[2025-11-28 10:09:10] 2025-11-28 09:08:32,500 | INFO     | mean x: 1764282811.0259109
[2025-11-28 10:09:10] 2025-11-28 09:08:32,501 | INFO     | mean y: 2843811.9684210527
[2025-11-28 10:09:10] 2025-11-28 09:08:32,501 | INFO     | intersect: -8525439229.935058
[2025-11-28 10:09:10] 2025-11-28 09:08:32,502 | INFO     | chi2: 22.873942803507813
[2025-11-28 10:09:10] 2025-11-28 09:08:32,503 | INFO     | current chi2=22.873942803507813 (change=12.608610442587967 %)
[2025-11-28 10:09:10] 2025-11-28 09:08:32,503 | INFO     | right removable region: 1234
[2025-11-28 10:09:10] 2025-11-28 09:08:32,504 | INFO     | sum of square deviations: 584088227293.1705
[2025-11-28 10:09:10] 2025-11-28 09:08:32,552 | INFO     | sum of deviations: 1889531669174.378
[2025-11-28 10:09:10] 2025-11-28 09:08:32,552 | INFO     | mean x: 1764283116.0259109
[2025-11-28 10:09:10] 2025-11-28 09:08:32,553 | INFO     | mean y: 2846064.706882591
[2025-11-28 10:09:10] 2025-11-28 09:08:32,553 | INFO     | intersect: -5704628705.962222
[2025-11-28 10:09:10] 2025-11-28 09:08:32,554 | INFO     | chi2: 21.407589802629047
[2025-11-28 10:09:10] 2025-11-28 09:08:32,554 | INFO     | current chi2=21.407589802629047 (change=18.210907669143264 %)
[2025-11-28 10:09:10] 2025-11-28 09:08:32,555 | INFO     | left removable region: 10
[2025-11-28 10:09:10] 2025-11-28 09:08:32,556 | INFO     | sum of square deviations: 568619661048.4893
[2025-11-28 10:09:10] 2025-11-28 09:08:32,601 | INFO     | sum of deviations: 1937103638321.6929
[2025-11-28 10:09:10] 2025-11-28 09:08:32,602 | INFO     | mean x: 1764283085.5351307
[2025-11-28 10:09:10] 2025-11-28 09:08:32,602 | INFO     | mean y: 2866960.472222222
[2025-11-28 10:09:10] 2025-11-28 09:08:32,602 | INFO     | intersect: -6007476012.399564
[2025-11-28 10:09:10] 2025-11-28 09:08:32,603 | INFO     | chi2: 13.66714977937443
[2025-11-28 10:09:10] 2025-11-28 09:08:32,603 | INFO     | current memory leak: 3.41 B/s (using 1224 data points, chi2=13.67)
[2025-11-28 10:09:10] 2025-11-28 09:08:32,605 | INFO     | could have reported an average CPU frequency of 2249 MHz (42 samples)
[2025-11-28 10:09:10] 2025-11-28 09:08:32,605 | INFO     | ..............................
[2025-11-28 10:09:10] 2025-11-28 09:08:32,605 | INFO     | . Timing measurements:
[2025-11-28 10:09:10] 2025-11-28 09:08:32,605 | INFO     | . get job = 0 s
[2025-11-28 10:09:10] 2025-11-28 09:08:32,605 | INFO     | . initial setup = 8 s
[2025-11-28 10:09:10] 2025-11-28 09:08:32,605 | INFO     | . payload setup = 167 s
[2025-11-28 10:09:10] 2025-11-28 09:08:32,605 | INFO     | . stage-in = 0 s
[2025-11-28 10:09:10] 2025-11-28 09:08:32,605 | INFO     | . payload execution = 75798 s
[2025-11-28 10:09:10] 2025-11-28 09:08:32,605 | INFO     | . stage-out = 4 s
[2025-11-28 10:09:10] 2025-11-28 09:08:32,605 | INFO     | . log creation = 1 s
[2025-11-28 10:09:10] 2025-11-28 09:08:32,606 | INFO     | ..............................
[2025-11-28 10:09:10] 2025-11-28 09:08:32,606 | INFO     | monitor loop #5180: job 0:6891597062 is in state 'finished'
[2025-11-28 10:09:10] 2025-11-28 09:08:32,607 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 10:09:10] 2025-11-28 09:08:32,727 | INFO     | 
[2025-11-28 10:09:10] 2025-11-28 09:08:32,728 | INFO     | job summary report
[2025-11-28 10:09:10] 2025-11-28 09:08:32,728 | INFO     | --------------------------------------------------
[2025-11-28 10:09:10] 2025-11-28 09:08:32,728 | INFO     | PanDA job id: 6891597062
[2025-11-28 10:09:10] 2025-11-28 09:08:32,728 | INFO     | task id: 47493068
[2025-11-28 10:09:10] 2025-11-28 09:08:32,728 | INFO     | errors: (none)
[2025-11-28 10:09:10] 2025-11-28 09:08:32,728 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-28 10:09:10] 2025-11-28 09:08:32,728 | INFO     | pilot state: finished 
[2025-11-28 10:09:10] 2025-11-28 09:08:32,728 | INFO     | transexitcode: 0
[2025-11-28 10:09:10] 2025-11-28 09:08:32,728 | INFO     | exeerrorcode: 0
[2025-11-28 10:09:10] 2025-11-28 09:08:32,728 | INFO     | exeerrordiag: 
[2025-11-28 10:09:10] 2025-11-28 09:08:32,729 | INFO     | exitcode: 0
[2025-11-28 10:09:10] 2025-11-28 09:08:32,729 | INFO     | exitmsg: OK
[2025-11-28 10:09:10] 2025-11-28 09:08:32,729 | INFO     | cpuconsumptiontime: 284782 s
[2025-11-28 10:09:10] 2025-11-28 09:08:32,729 | INFO     | nevents: 1000
[2025-11-28 10:09:10] 2025-11-28 09:08:32,729 | INFO     | neventsw: 0
[2025-11-28 10:09:10] 2025-11-28 09:08:32,729 | INFO     | pid: 26114
[2025-11-28 10:09:10] 2025-11-28 09:08:32,729 | INFO     | pgrp: 26114
[2025-11-28 10:09:10] 2025-11-28 09:08:32,729 | INFO     | corecount: 8
[2025-11-28 10:09:10] 2025-11-28 09:08:32,729 | INFO     | event service: False
[2025-11-28 10:09:10] 2025-11-28 09:08:32,729 | INFO     | sizes: {0: 2283419, 1: 2284105, 2: 2284304, 12: 2284304, 23: 2284332, 34: 2284360, 45: 2284516, 55: 2284544, 66: 2284572, 77: 2284600, 87: 2284656, 93: 2285226, 98
[2025-11-28 10:09:10] 2025-11-28 09:08:32,729 | INFO     | --------------------------------------------------
[2025-11-28 10:09:10] 2025-11-28 09:08:32,729 | INFO     | 
[2025-11-28 10:09:10] 2025-11-28 09:08:32,730 | INFO     | executing command: ls -lF /var/lib/boinc/slots/12
[2025-11-28 10:09:10] 2025-11-28 09:08:32,961 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-28 10:09:10] 2025-11-28 09:08:32,961 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-28 10:09:10] 2025-11-28 09:08:32,961 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-28 10:09:10] 2025-11-28 09:08:32,961 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-28 10:09:10] 2025-11-28 09:08:32,962 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-28 10:09:10] 2025-11-28 09:08:32,962 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-28 10:09:10] 2025-11-28 09:08:32,962 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-28 10:09:10] 2025-11-28 09:08:32,962 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-28 10:09:10] 2025-11-28 09:08:32,962 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-28 10:09:10] 2025-11-28 09:08:32,962 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-28 10:09:10] 2025-11-28 09:08:32,962 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-28 10:09:10] 2025-11-28 09:08:32,962 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-28 10:09:10] 2025-11-28 09:08:32,962 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-28 10:09:10] 2025-11-28 09:08:32,962 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-28 10:09:10] 2025-11-28 09:08:32,962 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-28 10:09:10] 2025-11-28 09:08:32,962 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-28 10:09:10] 2025-11-28 09:08:32,963 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-28 10:09:10] 2025-11-28 09:08:32,963 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-28 10:09:10] 2025-11-28 09:08:32,963 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-28 10:09:10] 2025-11-28 09:08:32,963 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-28 10:09:10] 2025-11-28 09:08:32,963 | INFO     | job 6891597062 has completed (purged errors)
[2025-11-28 10:09:10] 2025-11-28 09:08:32,963 | INFO     | overall cleanup function is called
[2025-11-28 10:09:10] 2025-11-28 09:08:33,979 | INFO     | --- collectZombieJob: --- 10, [26114]
[2025-11-28 10:09:10] 2025-11-28 09:08:33,980 | INFO     | zombie collector waiting for pid 26114
[2025-11-28 10:09:10] 2025-11-28 09:08:33,980 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-28 10:09:10] 2025-11-28 09:08:33,980 | INFO     | collected zombie processes
[2025-11-28 10:09:10] 2025-11-28 09:08:33,980 | INFO     | will attempt to kill all subprocesses of pid=26114
[2025-11-28 10:09:10] 2025-11-28 09:08:34,082 | INFO     | process IDs to be killed: [26114] (in reverse order)
[2025-11-28 10:09:10] 2025-11-28 09:08:34,840 | WARNING  | found no corresponding commands to process id(s)
[2025-11-28 10:09:10] 2025-11-28 09:08:34,841 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-28 10:09:10] 2025-11-28 09:08:34,844 | INFO     | did not find any defunct processes belonging to 26114
[2025-11-28 10:09:10] 2025-11-28 09:08:34,846 | INFO     | did not find any defunct processes belonging to 26114
[2025-11-28 10:09:10] 2025-11-28 09:08:34,858 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 10:09:10] 2025-11-28 09:08:34,858 | INFO     | ready for new job
[2025-11-28 10:09:10] 2025-11-28 09:08:34,858 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 10:09:10] 2025-11-28 09:08:34,863 | INFO     | ***************************************
[2025-11-28 10:09:10] 2025-11-28 09:08:34,863 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 10:09:10] 2025-11-28 09:08:34,863 | INFO     | ***************************************
[2025-11-28 10:09:10] 2025-11-28 09:08:34,863 | INFO     | 
[2025-11-28 10:09:10] 2025-11-28 09:08:34,864 | INFO     | pilot is running in a VM
[2025-11-28 10:09:10] 2025-11-28 09:08:34,864 | INFO     | architecture information:
[2025-11-28 10:09:10] 2025-11-28 09:08:34,874 | INFO     | executing command: cat /etc/os-release
[2025-11-28 10:09:10] 2025-11-28 09:08:35,061 | INFO     | cat /etc/os-release:
[2025-11-28 10:09:10] NAME="CentOS Linux"
[2025-11-28 10:09:10] VERSION="7 (Core)"
[2025-11-28 10:09:10] ID="centos"
[2025-11-28 10:09:10] ID_LIKE="rhel fedora"
[2025-11-28 10:09:10] VERSION_ID="7"
[2025-11-28 10:09:10] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 10:09:10] ANSI_COLOR="0;31"
[2025-11-28 10:09:10] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 10:09:10] HOME_URL="https://www.centos.org/"
[2025-11-28 10:09:10] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 10:09:10] 
[2025-11-28 10:09:10] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 10:09:10] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 10:09:10] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 10:09:10] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 10:09:10] 
[2025-11-28 10:09:10] 2025-11-28 09:08:35,061 | INFO     | ***************************************
[2025-11-28 10:09:10] 2025-11-28 09:08:35,565 | INFO     | executing command: df -mP /var/lib/boinc/slots/12
[2025-11-28 10:09:10] 2025-11-28 09:08:35,758 | INFO     | sufficient remaining disk space (495244541952 B)
[2025-11-28 10:09:10] 2025-11-28 09:08:35,758 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 10:09:10] 2025-11-28 09:08:35,758 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 10:09:10] 2025-11-28 09:08:35,759 | INFO     | update_server=False
[2025-11-28 10:09:10] 2025-11-28 09:08:35,759 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 10:09:10] 2025-11-28 09:08:35,759 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 10:09:10] 2025-11-28 09:08:35,935 | INFO     | all job control threads have been joined
[2025-11-28 10:09:10] 2025-11-28 09:08:36,117 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 10:09:10] 2025-11-28 09:08:36,118 | INFO     | aborting loop
[2025-11-28 10:09:10] 2025-11-28 09:08:36,438 | INFO     | all payload control threads have been joined
[2025-11-28 10:09:10] 2025-11-28 09:08:36,535 | INFO     | all data control threads have been joined
[2025-11-28 10:09:10] 2025-11-28 09:08:36,765 | INFO     | [job] retrieve thread has finished
[2025-11-28 10:09:10] 2025-11-28 09:08:36,944 | INFO     | [job] control thread has finished
[2025-11-28 10:09:10] 2025-11-28 09:08:37,124 | INFO     | [job] job monitor thread has finished
[2025-11-28 10:09:10] 2025-11-28 09:08:37,217 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 10:09:10] 2025-11-28 09:08:37,281 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 10:09:10] 2025-11-28 09:08:37,445 | INFO     | [payload] control thread has finished
[2025-11-28 10:09:10] 2025-11-28 09:08:37,542 | INFO     | [data] control thread has finished
[2025-11-28 10:09:10] 2025-11-28 09:08:37,543 | INFO     | [data] copytool_in thread has finished
[2025-11-28 10:09:10] 2025-11-28 09:08:37,611 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 10:09:10] 2025-11-28 09:08:37,743 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 10:09:10] 2025-11-28 09:08:37,767 | INFO     | [data] copytool_out thread has finished
[2025-11-28 10:09:10] 2025-11-28 09:08:37,886 | INFO     | [payload] validate_post thread has finished
[2025-11-28 10:09:10] 2025-11-28 09:08:37,916 | INFO     | [payload] failed_post thread has finished
[2025-11-28 10:09:10] 2025-11-28 09:08:37,974 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 10:09:10] 2025-11-28 09:08:38,106 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 10:09:10] 2025-11-28 09:08:38,253 | INFO     | [job] validate thread has finished
[2025-11-28 10:09:10] 2025-11-28 09:08:38,750 | INFO     | [job] queue monitor thread has finished
[2025-11-28 10:09:10] 2025-11-28 09:08:41,291 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 10:09:10] 2025-11-28 09:08:47,301 | INFO     | [monitor] cgroup control has ended
[2025-11-28 10:09:10] 2025-11-28 09:08:48,783 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140456693892928)>', '<ExcThread(monitor, started 140456394467072)>']
[2025-11-28 10:09:10] 2025-11-28 09:08:53,808 | INFO     | all workflow threads have been joined
[2025-11-28 10:09:10] 2025-11-28 09:08:53,809 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 10:09:10] 2025-11-28 09:08:53,809 | INFO     | traces error code: 0
[2025-11-28 10:09:10] 2025-11-28 09:08:53,809 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 10:09:10] 2025-11-28 09:09:05,316 | INFO     | PID=19510 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-28 10:09:10] 2025-11-28 09:09:05,316 | INFO     | .. there are 9 such processes running
[2025-11-28 10:09:10] 2025-11-28 09:09:05,318 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 10:09:10] 2025-11-28 09:09:05,318 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 10:09:10] 2025-11-28 09:09:05,318 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 10:09:10] 2025-11-28 09:09:05,318 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 10:09:10] 2025-11-28 09:09:05,318 | INFO     | [monitor] control thread has ended
[2025-11-28 10:09:10] 2025-11-28 09:09:05,595 [wrapper] ==== pilot stdout END ====
[2025-11-28 10:09:10] 2025-11-28 09:09:05,673 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 10:09:10] 2025-11-28 09:09:05,705 [wrapper] pilotpid: 19510
[2025-11-28 10:09:10] 2025-11-28 09:09:05,728 [wrapper] Pilot exit status: 0
[2025-11-28 10:09:10] 2025-11-28 09:09:05,981 [wrapper] pandaids: 6891597062
[2025-11-28 10:09:10] 2025-11-28 09:09:06,904 [wrapper] cleanup supervisor_pilot 16916 19511
[2025-11-28 10:09:10] 2025-11-28 09:09:06,960 [wrapper] Test setup, not cleaning
[2025-11-28 10:09:10] 2025-11-28 09:09:07,034 [wrapper] apfmon messages muted
[2025-11-28 10:09:10] 2025-11-28 09:09:07,116 [wrapper] ==== wrapper stdout END ====
[2025-11-28 10:09:10] 2025-11-28 09:09:07,190 [wrapper] ==== wrapper stderr END ====
[2025-11-28 10:09:10]  *** Error codes and diagnostics ***
[2025-11-28 10:09:10]     "exeErrorCode": 0,
[2025-11-28 10:09:10]     "exeErrorDiag": "",
[2025-11-28 10:09:10]     "pilotErrorCode": 0,
[2025-11-28 10:09:10]     "pilotErrorDiag": "",
[2025-11-28 10:09:10]  *** Listing of results directory ***
[2025-11-28 10:09:10] total 1327356
[2025-11-28 10:09:10] -rw-r--r--. 1 boinc boinc    576529 Nov 18 19:36 pilot3.tar.gz
[2025-11-28 10:09:10] -rw-r--r--. 1 boinc boinc      5112 Nov 18 19:48 queuedata.json
[2025-11-28 10:09:10] -rwx------. 1 boinc boinc     36292 Nov 18 19:49 runpilot2-wrapper.sh
[2025-11-28 10:09:10] -rw-r--r--. 1 boinc boinc       100 Nov 27 12:53 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 10:09:10] -rwxr-xr-x. 1 boinc boinc      7986 Nov 27 12:53 run_atlas
[2025-11-28 10:09:10] -rw-r--r--. 1 boinc boinc       105 Nov 27 12:53 job.xml
[2025-11-28 10:09:10] -rw-r--r--. 1 boinc boinc      6392 Nov 27 12:53 init_data.xml
[2025-11-28 10:09:10] -rw-r--r--. 2 boinc boinc 409441780 Nov 27 12:53 EVNT.47493065._000790.pool.root.1
[2025-11-28 10:09:10] -rw-r--r--. 2 boinc boinc     15120 Nov 27 12:53 start_atlas.sh
[2025-11-28 10:09:10] drwxrwx--x. 2 boinc boinc        68 Nov 27 12:53 shared
[2025-11-28 10:09:10] -rw-r--r--. 2 boinc boinc    590100 Nov 27 12:53 input.tar.gz
[2025-11-28 10:09:10] -rw-r--r--. 1 boinc boinc         0 Nov 27 12:53 boinc_lockfile
[2025-11-28 10:09:10] -rw-r--r--. 1 boinc boinc      2769 Nov 27 12:53 pandaJob.out
[2025-11-28 10:09:10] -rw-------. 1 boinc boinc    991572 Nov 27 12:57 agis_schedconf.cvmfs.json
[2025-11-28 10:09:10] drwx------. 5 boinc boinc      4096 Nov 27 12:57 pilot3
[2025-11-28 10:09:10] -rw-r--r--. 1 boinc boinc       533 Nov 28 09:42 boinc_task_state.xml
[2025-11-28 10:09:10] -rw-------. 1 boinc boinc 920696675 Nov 28 10:05 HITS.47493068._006541.pool.root.1
[2025-11-28 10:09:10] -rw-------. 1 boinc boinc      1025 Nov 28 10:06 memory_monitor_summary.json
[2025-11-28 10:09:10] -rw-------. 1 boinc boinc   1516240 Nov 28 10:06 agis_ddmendpoints.agis.ALL.json
[2025-11-28 10:09:10] -rw-------. 1 boinc boinc   2354420 Nov 28 10:06 log.47493068._006541.job.log.tgz.1
[2025-11-28 10:09:10] -rw-------. 1 boinc boinc      8623 Nov 28 10:08 heartbeat.json
[2025-11-28 10:09:10] -rw-------. 1 boinc boinc        95 Nov 28 10:09 pilot_heartbeat.json
[2025-11-28 10:09:10] -rw-------. 1 boinc boinc       820 Nov 28 10:09 pilotlog.txt
[2025-11-28 10:09:10] -rw-r--r--. 1 boinc boinc        29 Nov 28 10:09 wrapper_checkpoint.txt
[2025-11-28 10:09:10] -rw-r--r--. 1 boinc boinc      8192 Nov 28 10:09 boinc_mmap_file
[2025-11-28 10:09:10] -rw-------. 1 boinc boinc  10228843 Nov 28 10:09 log.47493068._006541.job.log.1
[2025-11-28 10:09:10] -rw-------. 1 boinc boinc       353 Nov 28 10:09 output.list
[2025-11-28 10:09:10] -rw-r--r--. 1 boinc boinc       620 Nov 28 10:09 runtime_log
[2025-11-28 10:09:10] -rw-------. 1 boinc boinc  12605440 Nov 28 10:09 result.tar.gz
[2025-11-28 10:09:10] -rw-r--r--. 1 boinc boinc      8717 Nov 28 10:09 runtime_log.err
[2025-11-28 10:09:10] -rw-------. 1 boinc boinc       662 Nov 28 10:09 0CnLDmUwff8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmGjFKDm2fo9Zn.diag
[2025-11-28 10:09:10] -rw-r--r--. 1 boinc boinc     21448 Nov 28 10:09 stderr.txt
[2025-11-28 10:09:10] HITS file was successfully produced:
[2025-11-28 10:09:10] -rw-------. 1 boinc boinc 920696675 Nov 28 10:05 shared/HITS.pool.root.1
[2025-11-28 10:09:10]  *** Contents of shared directory: ***
[2025-11-28 10:09:10] total 1311876
[2025-11-28 10:09:10] -rw-r--r--. 2 boinc boinc 409441780 Nov 27 12:53 ATLAS.root_0
[2025-11-28 10:09:10] -rw-r--r--. 2 boinc boinc     15120 Nov 27 12:53 start_atlas.sh
[2025-11-28 10:09:10] -rw-r--r--. 2 boinc boinc    590100 Nov 27 12:53 input.tar.gz
[2025-11-28 10:09:10] -rw-------. 1 boinc boinc 920696675 Nov 28 10:05 HITS.pool.root.1
[2025-11-28 10:09:10] -rw-------. 1 boinc boinc  12605440 Nov 28 10:09 result.tar.gz
10:09:11 (15676): run_atlas exited; CPU time 285247.898980
10:09:11 (15676): called boinc_finish(0)

</stderr_txt>
]]>

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