Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
19:04:56 (7604): wrapper (7.7.26015): starting
19:04:56 (7604): wrapper: running run_atlas (--nthreads 12)
[2025-11-25 19:04:56] Arguments: --nthreads 12
[2025-11-25 19:04:56] Threads: 12
[2025-11-25 19:04:56] Checking for CVMFS
[2025-11-25 19:04:56] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 19:04:56] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 19:04:56] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 19:04:56] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 19:04:56] 2.13.0.0 4161 465 78808 153292 3 81 3545814 4096000 0 130560 0 340182 99.980 22690 490 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://128.142.248.156:3125 1
[2025-11-25 19:04:56] CVMFS is ok
[2025-11-25 19:04:56] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 19:04:56] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 19:04:56] Further information can be found at the LHC@home message board.
[2025-11-25 19:04:56] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 19:04:56] Checking for apptainer binary...
[2025-11-25 19:04:56] which: no apptainer in (/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin)
[2025-11-25 19:04:56] apptainer is not installed, using version from CVMFS
[2025-11-25 19:04:56] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 19:04:56] dagobert
[2025-11-25 19:04:56] apptainer works
[2025-11-25 19:04:56] Set ATHENA_PROC_NUMBER=12
[2025-11-25 19:04:56] Set ATHENA_CORE_NUMBER=12
[2025-11-25 19:04:56] Starting ATLAS job with PandaID=6895617964
[2025-11-25 19:04:56] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 21:41:32]  *** The last 200 lines of the pilot log: ***
[2025-11-25 21:41:32] 2025-11-25 20:40:59,492 | INFO     | monitor loop #686: job 0:6895617964 is in state 'finished'
[2025-11-25 21:41:32] 2025-11-25 20:40:59,492 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 21:41:32] 2025-11-25 20:41:00,183 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-25 21:41:32] 2025-11-25 20:41:00,184 | INFO     | found 6 cores (6 cores per socket, 1 socket) HT, CPU MHz: 3298.9195
[2025-11-25 21:41:32] 2025-11-25 20:41:00,186 | INFO     | using path: /var/lib/boinc/slots/0/PanDA_Pilot-6895617964/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 21:41:32] 2025-11-25 20:41:00,186 | INFO     | extracted standard info from prmon json
[2025-11-25 21:41:32] 2025-11-25 20:41:00,186 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 21:41:32] 2025-11-25 20:41:00,186 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 21:41:32] 2025-11-25 20:41:00,187 | INFO     | fitting pss+swap vs Time
[2025-11-25 21:41:32] 2025-11-25 20:41:00,188 | INFO     | sum of square deviations: 1132458442.5
[2025-11-25 21:41:32] 2025-11-25 20:41:00,188 | INFO     | sum of deviations: 66445046416.00004
[2025-11-25 21:41:32] 2025-11-25 20:41:00,188 | INFO     | mean x: 1764098582.5
[2025-11-25 21:41:32] 2025-11-25 20:41:00,188 | INFO     | mean y: 3538976.883116883
[2025-11-25 21:41:32] 2025-11-25 20:41:00,188 | INFO     | intersect: -103501903516.74937
[2025-11-25 21:41:32] 2025-11-25 20:41:00,188 | INFO     | chi2: 3.257878405343935
[2025-11-25 21:41:32] 2025-11-25 20:41:00,188 | INFO     | sum of square deviations: 1025693650.0
[2025-11-25 21:41:32] 2025-11-25 20:41:00,189 | INFO     | sum of deviations: 97861461372.0
[2025-11-25 21:41:32] 2025-11-25 20:41:00,189 | INFO     | mean x: 1764098430.0
[2025-11-25 21:41:32] 2025-11-25 20:41:00,189 | INFO     | mean y: 3582946.986577181
[2025-11-25 21:41:32] 2025-11-25 20:41:00,189 | INFO     | intersect: -168309100244.3843
[2025-11-25 21:41:32] 2025-11-25 20:41:00,189 | INFO     | chi2: 1.5092353002971042
[2025-11-25 21:41:32] 2025-11-25 20:41:00,189 | INFO     | current chi2=1.5092353002971042 (change=53.674290058785246 %)
[2025-11-25 21:41:32] 2025-11-25 20:41:00,189 | INFO     | sum of square deviations: 925859220.0
[2025-11-25 21:41:32] 2025-11-25 20:41:00,189 | INFO     | sum of deviations: 90943169948.5
[2025-11-25 21:41:32] 2025-11-25 20:41:00,189 | INFO     | mean x: 1764098277.5
[2025-11-25 21:41:32] 2025-11-25 20:41:00,189 | INFO     | mean y: 3572372.423611111
[2025-11-25 21:41:32] 2025-11-25 20:41:00,189 | INFO     | intersect: -173276215732.44464
[2025-11-25 21:41:32] 2025-11-25 20:41:00,189 | INFO     | chi2: 1.509502012270854
[2025-11-25 21:41:32] 2025-11-25 20:41:00,189 | INFO     | current chi2=1.509502012270854 (change=-0.017671994134866136 %)
[2025-11-25 21:41:32] 2025-11-25 20:41:00,189 | INFO     | right removable region: 143
[2025-11-25 21:41:32] 2025-11-25 20:41:00,189 | INFO     | sum of square deviations: 1025693650.0
[2025-11-25 21:41:32] 2025-11-25 20:41:00,189 | INFO     | sum of deviations: 31539239919.999985
[2025-11-25 21:41:32] 2025-11-25 20:41:00,189 | INFO     | mean x: 1764098735.0
[2025-11-25 21:41:32] 2025-11-25 20:41:00,189 | INFO     | mean y: 3588114.147651007
[2025-11-25 21:41:32] 2025-11-25 20:41:00,189 | INFO     | intersect: -54241003578.24849
[2025-11-25 21:41:32] 2025-11-25 20:41:00,189 | INFO     | chi2: 1.8136482657220836
[2025-11-25 21:41:32] 2025-11-25 20:41:00,189 | INFO     | current chi2=1.8136482657220836 (change=44.33038806030527 %)
[2025-11-25 21:41:32] 2025-11-25 20:41:00,189 | INFO     | sum of square deviations: 925859220.0
[2025-11-25 21:41:32] 2025-11-25 20:41:00,190 | INFO     | sum of deviations: 26281998382.5
[2025-11-25 21:41:32] 2025-11-25 20:41:00,190 | INFO     | mean x: 1764098887.5
[2025-11-25 21:41:32] 2025-11-25 20:41:00,190 | INFO     | mean y: 3596121.7430555555
[2025-11-25 21:41:32] 2025-11-25 20:41:00,190 | INFO     | intersect: -50073179165.80557
[2025-11-25 21:41:32] 2025-11-25 20:41:00,190 | INFO     | chi2: 1.8155076635471936
[2025-11-25 21:41:32] 2025-11-25 20:41:00,190 | INFO     | current chi2=1.8155076635471936 (change=-0.1025225155424347 %)
[2025-11-25 21:41:32] 2025-11-25 20:41:00,190 | INFO     | left removable region: 20
[2025-11-25 21:41:32] 2025-11-25 20:41:00,190 | INFO     | sum of square deviations: 576985702.0
[2025-11-25 21:41:32] 2025-11-25 20:41:00,190 | INFO     | sum of deviations: 38005261636.0
[2025-11-25 21:41:32] 2025-11-25 20:41:00,190 | INFO     | mean x: 1764098857.0
[2025-11-25 21:41:32] 2025-11-25 20:41:00,190 | INFO     | mean y: 3660116.2601626017
[2025-11-25 21:41:32] 2025-11-25 20:41:00,190 | INFO     | intersect: -116195126750.82507
[2025-11-25 21:41:32] 2025-11-25 20:41:00,190 | INFO     | chi2: 0.00603065475548264
[2025-11-25 21:41:32] 2025-11-25 20:41:00,190 | INFO     | current memory leak: 65.87 B/s (using 123 data points, chi2=0.01)
[2025-11-25 21:41:32] 2025-11-25 20:41:00,190 | INFO     | could have reported an average CPU frequency of 3910 MHz (9 samples)
[2025-11-25 21:41:32] 2025-11-25 20:41:00,190 | INFO     | ..............................
[2025-11-25 21:41:32] 2025-11-25 20:41:00,190 | INFO     | . Timing measurements:
[2025-11-25 21:41:32] 2025-11-25 20:41:00,190 | INFO     | . get job = 0 s
[2025-11-25 21:41:32] 2025-11-25 20:41:00,190 | INFO     | . initial setup = 1 s
[2025-11-25 21:41:32] 2025-11-25 20:41:00,190 | INFO     | . payload setup = 2 s
[2025-11-25 21:41:32] 2025-11-25 20:41:00,190 | INFO     | . stage-in = 0 s
[2025-11-25 21:41:32] 2025-11-25 20:41:00,190 | INFO     | . payload execution = 9336 s
[2025-11-25 21:41:32] 2025-11-25 20:41:00,190 | INFO     | . stage-out = 0 s
[2025-11-25 21:41:32] 2025-11-25 20:41:00,190 | INFO     | . log creation = 0 s
[2025-11-25 21:41:32] 2025-11-25 20:41:00,190 | INFO     | ..............................
[2025-11-25 21:41:32] 2025-11-25 20:41:00,212 | INFO     | 
[2025-11-25 21:41:32] 2025-11-25 20:41:00,212 | INFO     | job summary report
[2025-11-25 21:41:32] 2025-11-25 20:41:00,212 | INFO     | --------------------------------------------------
[2025-11-25 21:41:32] 2025-11-25 20:41:00,212 | INFO     | PanDA job id: 6895617964
[2025-11-25 21:41:32] 2025-11-25 20:41:00,212 | INFO     | task id: 47556149
[2025-11-25 21:41:32] 2025-11-25 20:41:00,212 | INFO     | errors: (none)
[2025-11-25 21:41:32] 2025-11-25 20:41:00,212 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 21:41:32] 2025-11-25 20:41:00,212 | INFO     | pilot state: finished 
[2025-11-25 21:41:32] 2025-11-25 20:41:00,212 | INFO     | transexitcode: 0
[2025-11-25 21:41:32] 2025-11-25 20:41:00,212 | INFO     | exeerrorcode: 0
[2025-11-25 21:41:32] 2025-11-25 20:41:00,212 | INFO     | exeerrordiag: 
[2025-11-25 21:41:32] 2025-11-25 20:41:00,212 | INFO     | exitcode: 0
[2025-11-25 21:41:32] 2025-11-25 20:41:00,212 | INFO     | exitmsg: OK
[2025-11-25 21:41:32] 2025-11-25 20:41:00,212 | INFO     | cpuconsumptiontime: 108674 s
[2025-11-25 21:41:32] 2025-11-25 20:41:00,212 | INFO     | nevents: 1000
[2025-11-25 21:41:32] 2025-11-25 20:41:00,212 | INFO     | neventsw: 0
[2025-11-25 21:41:32] 2025-11-25 20:41:00,212 | INFO     | pid: 17984
[2025-11-25 21:41:32] 2025-11-25 20:41:00,212 | INFO     | pgrp: 17984
[2025-11-25 21:41:32] 2025-11-25 20:41:00,212 | INFO     | corecount: 12
[2025-11-25 21:41:32] 2025-11-25 20:41:00,213 | INFO     | event service: False
[2025-11-25 21:41:32] 2025-11-25 20:41:00,213 | INFO     | sizes: {0: 2284314, 2: 2284576, 11: 2284604, 9341: 2313926, 9343: 2322920, 9345: 2322976, 9348: 2323414}
[2025-11-25 21:41:32] 2025-11-25 20:41:00,213 | INFO     | --------------------------------------------------
[2025-11-25 21:41:32] 2025-11-25 20:41:00,213 | INFO     | 
[2025-11-25 21:41:32] 2025-11-25 20:41:00,213 | INFO     | executing command: ls -lF /var/lib/boinc/slots/0
[2025-11-25 21:41:32] 2025-11-25 20:41:00,222 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 21:41:32] 2025-11-25 20:41:00,222 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 21:41:32] 2025-11-25 20:41:00,222 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 21:41:32] 2025-11-25 20:41:00,222 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 21:41:32] 2025-11-25 20:41:00,222 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 21:41:32] 2025-11-25 20:41:00,222 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 21:41:32] 2025-11-25 20:41:00,222 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 21:41:32] 2025-11-25 20:41:00,222 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 21:41:32] 2025-11-25 20:41:00,222 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 21:41:32] 2025-11-25 20:41:00,222 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 21:41:32] 2025-11-25 20:41:00,222 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 21:41:32] 2025-11-25 20:41:00,223 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 21:41:32] 2025-11-25 20:41:00,223 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 21:41:32] 2025-11-25 20:41:00,223 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 21:41:32] 2025-11-25 20:41:00,223 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 21:41:32] 2025-11-25 20:41:00,223 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 21:41:32] 2025-11-25 20:41:00,223 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 21:41:32] 2025-11-25 20:41:00,223 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 21:41:32] 2025-11-25 20:41:00,223 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 21:41:32] 2025-11-25 20:41:00,223 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 21:41:32] 2025-11-25 20:41:00,223 | INFO     | job 6895617964 has completed (purged errors)
[2025-11-25 21:41:32] 2025-11-25 20:41:00,223 | INFO     | overall cleanup function is called
[2025-11-25 21:41:32] 2025-11-25 20:41:01,235 | INFO     | --- collectZombieJob: --- 10, [17984]
[2025-11-25 21:41:32] 2025-11-25 20:41:01,235 | INFO     | zombie collector waiting for pid 17984
[2025-11-25 21:41:32] 2025-11-25 20:41:01,235 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 21:41:32] 2025-11-25 20:41:01,235 | INFO     | collected zombie processes
[2025-11-25 21:41:32] 2025-11-25 20:41:01,235 | INFO     | will attempt to kill all subprocesses of pid=17984
[2025-11-25 21:41:32] 2025-11-25 20:41:01,262 | INFO     | process IDs to be killed: [17984] (in reverse order)
[2025-11-25 21:41:32] 2025-11-25 20:41:01,278 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 21:41:32] 2025-11-25 20:41:01,278 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 21:41:32] 2025-11-25 20:41:01,280 | INFO     | did not find any defunct processes belonging to 17984
[2025-11-25 21:41:32] 2025-11-25 20:41:01,281 | INFO     | did not find any defunct processes belonging to 17984
[2025-11-25 21:41:32] 2025-11-25 20:41:01,281 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 21:41:32] 2025-11-25 20:41:01,281 | INFO     | ready for new job
[2025-11-25 21:41:32] 2025-11-25 20:41:01,281 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 21:41:32] 2025-11-25 20:41:01,282 | INFO     | ***************************************
[2025-11-25 21:41:32] 2025-11-25 20:41:01,282 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 21:41:32] 2025-11-25 20:41:01,282 | INFO     | ***************************************
[2025-11-25 21:41:32] 2025-11-25 20:41:01,282 | INFO     | 
[2025-11-25 21:41:32] 2025-11-25 20:41:01,283 | INFO     | architecture information:
[2025-11-25 21:41:32] 2025-11-25 20:41:01,283 | INFO     | executing command: cat /etc/os-release
[2025-11-25 21:41:32] 2025-11-25 20:41:01,290 | INFO     | cat /etc/os-release:
[2025-11-25 21:41:32] NAME="CentOS Linux"
[2025-11-25 21:41:32] VERSION="7 (Core)"
[2025-11-25 21:41:32] ID="centos"
[2025-11-25 21:41:32] ID_LIKE="rhel fedora"
[2025-11-25 21:41:32] VERSION_ID="7"
[2025-11-25 21:41:32] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 21:41:32] ANSI_COLOR="0;31"
[2025-11-25 21:41:32] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 21:41:32] HOME_URL="https://www.centos.org/"
[2025-11-25 21:41:32] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 21:41:32] 
[2025-11-25 21:41:32] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 21:41:32] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 21:41:32] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 21:41:32] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 21:41:32] 
[2025-11-25 21:41:32] 2025-11-25 20:41:01,290 | INFO     | ***************************************
[2025-11-25 21:41:32] 2025-11-25 20:41:01,793 | INFO     | executing command: df -mP /var/lib/boinc/slots/0
[2025-11-25 21:41:32] 2025-11-25 20:41:01,803 | INFO     | sufficient remaining disk space (122402373632 B)
[2025-11-25 21:41:32] 2025-11-25 20:41:01,803 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 21:41:32] 2025-11-25 20:41:01,803 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 21:41:32] 2025-11-25 20:41:01,803 | INFO     | update_server=False
[2025-11-25 21:41:32] 2025-11-25 20:41:01,803 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 21:41:32] 2025-11-25 20:41:01,803 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 21:41:32] 2025-11-25 20:41:01,995 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-25 21:41:32] 2025-11-25 20:41:01,996 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-25 21:41:32] 2025-11-25 20:41:01,996 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 21:41:32] 2025-11-25 20:41:01,996 | INFO     | will abort loop
[2025-11-25 21:41:32] 2025-11-25 20:41:02,068 | INFO     | all payload control threads have been joined
[2025-11-25 21:41:32] 2025-11-25 20:41:02,265 | INFO     | all job control threads have been joined
[2025-11-25 21:41:32] 2025-11-25 20:41:02,626 | INFO     | all data control threads have been joined
[2025-11-25 21:41:32] 2025-11-25 20:41:02,808 | INFO     | [job] queue monitor thread has finished
[2025-11-25 21:41:32] 2025-11-25 20:41:02,808 | INFO     | [job] retrieve thread has finished
[2025-11-25 21:41:32] 2025-11-25 20:41:02,914 | INFO     | [payload] validate_post thread has finished
[2025-11-25 21:41:32] 2025-11-25 20:41:02,998 | INFO     | [job] job monitor thread has finished
[2025-11-25 21:41:32] 2025-11-25 20:41:03,054 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 21:41:32] 2025-11-25 20:41:03,060 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 21:41:32] 2025-11-25 20:41:03,073 | INFO     | [payload] control thread has finished
[2025-11-25 21:41:32] 2025-11-25 20:41:03,201 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 21:41:32] 2025-11-25 20:41:03,270 | INFO     | [job] control thread has finished
[2025-11-25 21:41:32] 2025-11-25 20:41:03,376 | INFO     | [payload] failed_post thread has finished
[2025-11-25 21:41:32] 2025-11-25 20:41:03,631 | INFO     | [data] control thread has finished
[2025-11-25 21:41:32] 2025-11-25 20:41:03,766 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 21:41:32] 2025-11-25 20:41:03,788 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 21:41:32] 2025-11-25 20:41:03,886 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 21:41:32] 2025-11-25 20:41:03,906 | INFO     | [job] validate thread has finished
[2025-11-25 21:41:32] 2025-11-25 20:41:04,026 | INFO     | [data] copytool_in thread has finished
[2025-11-25 21:41:32] 2025-11-25 20:41:05,058 | INFO     | [data] copytool_out thread has finished
[2025-11-25 21:41:32] 2025-11-25 20:41:07,795 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 21:41:32] 2025-11-25 20:41:15,845 | INFO     | [monitor] cgroup control has ended
[2025-11-25 21:41:32] 2025-11-25 20:41:17,326 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139993886803776)>', '<ExcThread(monitor, started 139993343305472)>']
[2025-11-25 21:41:32] 2025-11-25 20:41:22,330 | INFO     | all workflow threads have been joined
[2025-11-25 21:41:32] 2025-11-25 20:41:22,330 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 21:41:32] 2025-11-25 20:41:22,330 | INFO     | traces error code: 0
[2025-11-25 21:41:32] 2025-11-25 20:41:22,330 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 21:41:32] 2025-11-25 20:41:32,463 | INFO     | PID=11417 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-25 21:41:32] 2025-11-25 20:41:32,463 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 21:41:32] 2025-11-25 20:41:32,463 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 21:41:32] 2025-11-25 20:41:32,463 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 21:41:32] 2025-11-25 20:41:32,463 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 21:41:32] 2025-11-25 20:41:32,463 | INFO     | [monitor] control thread has ended
[2025-11-25 21:41:32] 2025-11-25 20:41:32,497 [wrapper] ==== pilot stdout END ====
[2025-11-25 21:41:32] 2025-11-25 20:41:32,498 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 21:41:32] 2025-11-25 20:41:32,499 [wrapper] pilotpid: 11417
[2025-11-25 21:41:32] 2025-11-25 20:41:32,501 [wrapper] Pilot exit status: 0
[2025-11-25 21:41:32] 2025-11-25 20:41:32,505 [wrapper] pandaids: 6895617964
[2025-11-25 21:41:32] 2025-11-25 20:41:32,515 [wrapper] cleanup supervisor_pilot  3455 11418
[2025-11-25 21:41:32] 2025-11-25 20:41:32,516 [wrapper] Test setup, not cleaning
[2025-11-25 21:41:32] 2025-11-25 20:41:32,517 [wrapper] apfmon messages muted
[2025-11-25 21:41:32] 2025-11-25 20:41:32,518 [wrapper] ==== wrapper stdout END ====
[2025-11-25 21:41:32] 2025-11-25 20:41:32,519 [wrapper] ==== wrapper stderr END ====
[2025-11-25 21:41:32]  *** Error codes and diagnostics ***
[2025-11-25 21:41:32]     "exeErrorCode": 0,
[2025-11-25 21:41:32]     "exeErrorDiag": "",
[2025-11-25 21:41:32]     "pilotErrorCode": 0,
[2025-11-25 21:41:32]     "pilotErrorDiag": "",
[2025-11-25 21:41:32]  *** Listing of results directory ***
[2025-11-25 21:41:32] total 1312980
[2025-11-25 21:41:32] -rw-r--r-- 1 boinc boinc    576529 Nov 24 12:12 pilot3.tar.gz
[2025-11-25 21:41:32] -rwx------ 1 boinc boinc     36292 Nov 24 12:31 runpilot2-wrapper.sh
[2025-11-25 21:41:32] -rw-r--r-- 1 boinc boinc      5112 Nov 24 12:31 queuedata.json
[2025-11-25 21:41:32] -rw-r--r-- 1 boinc boinc       100 Nov 25 19:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 21:41:32] -rwxr-xr-x 1 boinc boinc      7986 Nov 25 19:04 run_atlas
[2025-11-25 21:41:32] -rw-r--r-- 1 boinc boinc       105 Nov 25 19:04 job.xml
[2025-11-25 21:41:32] -rw-r--r-- 2 boinc boinc     15847 Nov 25 19:04 start_atlas.sh
[2025-11-25 21:41:32] drwxrwx--x 2 boinc boinc      4096 Nov 25 19:04 shared
[2025-11-25 21:41:32] -rw-r--r-- 2 boinc boinc    590095 Nov 25 19:04 input.tar.gz
[2025-11-25 21:41:32] -rw-r--r-- 1 boinc boinc      7169 Nov 25 19:04 init_data.xml
[2025-11-25 21:41:32] -rw-r--r-- 2 boinc boinc 410463100 Nov 25 19:04 EVNT.47483658._001327.pool.root.1
[2025-11-25 21:41:32] -rw-r--r-- 1 boinc boinc         0 Nov 25 19:04 boinc_lockfile
[2025-11-25 21:41:32] -rw-r--r-- 1 boinc boinc      2785 Nov 25 19:04 pandaJob.out
[2025-11-25 21:41:32] -rw------- 1 boinc boinc    991543 Nov 25 19:04 agis_schedconf.cvmfs.json
[2025-11-25 21:41:32] -rw------- 1 boinc boinc   1516240 Nov 25 19:04 agis_ddmendpoints.agis.ALL.json
[2025-11-25 21:41:32] drwx------ 5 boinc boinc      4096 Nov 25 19:05 pilot3
[2025-11-25 21:41:32] -rw-r--r-- 1 boinc boinc       531 Nov 25 21:38 boinc_task_state.xml
[2025-11-25 21:41:32] -rw------- 1 boinc boinc 923742641 Nov 25 21:40 HITS.47556149._003133.pool.root.1
[2025-11-25 21:41:32] -rw------- 1 boinc boinc      1025 Nov 25 21:40 memory_monitor_summary.json
[2025-11-25 21:41:32] -rw------- 1 boinc boinc        95 Nov 25 21:40 pilot_heartbeat.json
[2025-11-25 21:41:32] -rw------- 1 boinc boinc   1861888 Nov 25 21:40 log.47556149._003133.job.log.tgz.1
[2025-11-25 21:41:32] -rw------- 1 boinc boinc      8564 Nov 25 21:41 heartbeat.json
[2025-11-25 21:41:32] -rw-r--r-- 1 boinc boinc      8192 Nov 25 21:41 boinc_mmap_file
[2025-11-25 21:41:32] -rw-r--r-- 1 boinc boinc        28 Nov 25 21:41 wrapper_checkpoint.txt
[2025-11-25 21:41:32] -rw------- 1 boinc boinc       745 Nov 25 21:41 pilotlog.txt
[2025-11-25 21:41:32] -rw------- 1 boinc boinc   1322789 Nov 25 21:41 log.47556149._003133.job.log.1
[2025-11-25 21:41:32] -rw-r--r-- 1 boinc boinc       620 Nov 25 21:41 runtime_log
[2025-11-25 21:41:32] -rw------- 1 boinc boinc   3205120 Nov 25 21:41 result.tar.gz
[2025-11-25 21:41:32] -rw------- 1 boinc boinc       353 Nov 25 21:41 output.list
[2025-11-25 21:41:32] -rw-r--r-- 1 boinc boinc      8766 Nov 25 21:41 runtime_log.err
[2025-11-25 21:41:32] -rw------- 1 boinc boinc       647 Nov 25 21:41 iLUNDmpxjh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmceLKDmkLOAgn.diag
[2025-11-25 21:41:32] -rw-r--r-- 1 boinc boinc     21311 Nov 25 21:41 stderr.txt
[2025-11-25 21:41:32] HITS file was successfully produced:
[2025-11-25 21:41:32] -rw------- 1 boinc boinc 923742641 Nov 25 21:40 shared/HITS.pool.root.1
[2025-11-25 21:41:32]  *** Contents of shared directory: ***
[2025-11-25 21:41:32] total 1306676
[2025-11-25 21:41:32] -rw-r--r-- 2 boinc boinc     15847 Nov 25 19:04 start_atlas.sh
[2025-11-25 21:41:32] -rw-r--r-- 2 boinc boinc    590095 Nov 25 19:04 input.tar.gz
[2025-11-25 21:41:32] -rw-r--r-- 2 boinc boinc 410463100 Nov 25 19:04 ATLAS.root_0
[2025-11-25 21:41:32] -rw------- 1 boinc boinc 923742641 Nov 25 21:40 HITS.pool.root.1
[2025-11-25 21:41:32] -rw------- 1 boinc boinc   3205120 Nov 25 21:41 result.tar.gz
21:41:33 (7604): run_atlas exited; CPU time 108599.533421
21:41:33 (7604): called boinc_finish(0)

</stderr_txt>
]]>

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