Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
13:53:53 (5110): wrapper (7.7.26015): starting
13:53:53 (5110): wrapper: running run_atlas (--nthreads 12)
[2025-11-25 13:53:53] Arguments: --nthreads 12
[2025-11-25 13:53:53] Threads: 12
[2025-11-25 13:53:53] Checking for CVMFS
[2025-11-25 13:53:53] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 13:53:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 13:53:53] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 13:53:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 13:53:53] 2.13.0.0 4161 154 65040 153283 1 81 3467834 4096000 0 130560 0 109727 99.976 8040 455 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://128.142.248.156:3125 1
[2025-11-25 13:53:53] CVMFS is ok
[2025-11-25 13:53:53] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 13:53:53] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 13:53:53] Further information can be found at the LHC@home message board.
[2025-11-25 13:53:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 13:53:53] Checking for apptainer binary...
[2025-11-25 13:53:53] which: no apptainer in (/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin)
[2025-11-25 13:53:53] apptainer is not installed, using version from CVMFS
[2025-11-25 13:53:53] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 13:53:53] dagobert
[2025-11-25 13:53:53] apptainer works
[2025-11-25 13:53:53] Set ATHENA_PROC_NUMBER=12
[2025-11-25 13:53:53] Set ATHENA_CORE_NUMBER=12
[2025-11-25 13:53:53] Starting ATLAS job with PandaID=6895559470
[2025-11-25 13:53:53] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 16:29:20]  *** The last 200 lines of the pilot log: ***
[2025-11-25 16:29:20] 2025-11-25 15:28:44,050 | INFO     | executing command: lscpu
[2025-11-25 16:29:20] 2025-11-25 15:28:44,062 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-25 16:29:20] 2025-11-25 15:28:44,309 | INFO     | time since job start (9286s) is within the limit (172800.0s)
[2025-11-25 16:29:20] 2025-11-25 15:28:45,347 | INFO     | PID=8945 has CPU usage=3.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-25 16:29:20] 2025-11-25 15:28:45,374 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-25 16:29:20] 2025-11-25 15:28:45,376 | INFO     | found 6 cores (6 cores per socket, 1 socket) HT, CPU MHz: 3242.62325
[2025-11-25 16:29:20] 2025-11-25 15:28:45,377 | INFO     | using path: /var/lib/boinc/slots/0/PanDA_Pilot-6895559470/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 16:29:20] 2025-11-25 15:28:45,377 | INFO     | extracted standard info from prmon json
[2025-11-25 16:29:20] 2025-11-25 15:28:45,377 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 16:29:20] 2025-11-25 15:28:45,377 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 16:29:20] 2025-11-25 15:28:45,378 | INFO     | fitting pss+swap vs Time
[2025-11-25 16:29:20] 2025-11-25 15:28:45,379 | INFO     | sum of square deviations: 1088905998.0
[2025-11-25 16:29:20] 2025-11-25 15:28:45,379 | INFO     | sum of deviations: 78103251614.0
[2025-11-25 16:29:20] 2025-11-25 15:28:45,379 | INFO     | mean x: 1764079858.5
[2025-11-25 16:29:20] 2025-11-25 15:28:45,379 | INFO     | mean y: 3590530.552631579
[2025-11-25 16:29:20] 2025-11-25 15:28:45,379 | INFO     | intersect: -126527417020.7668
[2025-11-25 16:29:20] 2025-11-25 15:28:45,379 | INFO     | chi2: 2.27259863751825
[2025-11-25 16:29:20] 2025-11-25 15:28:45,379 | INFO     | sum of square deviations: 984941258.0
[2025-11-25 16:29:20] 2025-11-25 15:28:45,380 | INFO     | sum of deviations: 91465428982.0
[2025-11-25 16:29:20] 2025-11-25 15:28:45,380 | INFO     | mean x: 1764079706.0
[2025-11-25 16:29:20] 2025-11-25 15:28:45,380 | INFO     | mean y: 3609463.2721088436
[2025-11-25 16:29:20] 2025-11-25 15:28:45,380 | INFO     | intersect: -163815608949.173
[2025-11-25 16:29:20] 2025-11-25 15:28:45,380 | INFO     | chi2: 1.5320266645275693
[2025-11-25 16:29:20] 2025-11-25 15:28:45,380 | INFO     | current chi2=1.5320266645275693 (change=32.587011219869815 %)
[2025-11-25 16:29:20] 2025-11-25 15:28:45,380 | INFO     | sum of square deviations: 887813855.5
[2025-11-25 16:29:20] 2025-11-25 15:28:45,380 | INFO     | sum of deviations: 85246467209.00002
[2025-11-25 16:29:20] 2025-11-25 15:28:45,380 | INFO     | mean x: 1764079553.5
[2025-11-25 16:29:20] 2025-11-25 15:28:45,380 | INFO     | mean y: 3599698.2112676054
[2025-11-25 16:29:20] 2025-11-25 15:28:45,380 | INFO     | intersect: -169380499096.70233
[2025-11-25 16:29:20] 2025-11-25 15:28:45,380 | INFO     | chi2: 1.532331955133622
[2025-11-25 16:29:20] 2025-11-25 15:28:45,380 | INFO     | current chi2=1.532331955133622 (change=-0.01992723841702321 %)
[2025-11-25 16:29:20] 2025-11-25 15:28:45,380 | INFO     | right removable region: 141
[2025-11-25 16:29:20] 2025-11-25 15:28:45,380 | INFO     | sum of square deviations: 984941258.0
[2025-11-25 16:29:20] 2025-11-25 15:28:45,381 | INFO     | sum of deviations: 42278398439.0
[2025-11-25 16:29:20] 2025-11-25 15:28:45,381 | INFO     | mean x: 1764080011.0
[2025-11-25 16:29:20] 2025-11-25 15:28:45,381 | INFO     | mean y: 3642342.1972789117
[2025-11-25 16:29:20] 2025-11-25 15:28:45,381 | INFO     | intersect: -75719124855.8984
[2025-11-25 16:29:20] 2025-11-25 15:28:45,381 | INFO     | chi2: 0.7777975212317754
[2025-11-25 16:29:20] 2025-11-25 15:28:45,381 | INFO     | current chi2=0.7777975212317754 (change=65.7749719466014 %)
[2025-11-25 16:29:20] 2025-11-25 15:28:45,381 | INFO     | sum of square deviations: 887813855.5
[2025-11-25 16:29:20] 2025-11-25 15:28:45,381 | INFO     | sum of deviations: 35852557057.00001
[2025-11-25 16:29:20] 2025-11-25 15:28:45,381 | INFO     | mean x: 1764080163.5
[2025-11-25 16:29:20] 2025-11-25 15:28:45,381 | INFO     | mean y: 3652409.5211267606
[2025-11-25 16:29:20] 2025-11-25 15:28:45,381 | INFO     | intersect: -71235137482.29268
[2025-11-25 16:29:20] 2025-11-25 15:28:45,382 | INFO     | chi2: 0.7757688974376469
[2025-11-25 16:29:20] 2025-11-25 15:28:45,382 | INFO     | current chi2=0.7757688974376469 (change=0.26081643856563336 %)
[2025-11-25 16:29:20] 2025-11-25 15:28:45,382 | INFO     | left removable region: 20
[2025-11-25 16:29:20] 2025-11-25 15:28:45,382 | INFO     | sum of square deviations: 549294020.0
[2025-11-25 16:29:20] 2025-11-25 15:28:45,382 | INFO     | sum of deviations: 37214756657.99999
[2025-11-25 16:29:20] 2025-11-25 15:28:45,382 | INFO     | mean x: 1764080133.0
[2025-11-25 16:29:20] 2025-11-25 15:28:45,382 | INFO     | mean y: 3680118.7685950412
[2025-11-25 16:29:20] 2025-11-25 15:28:45,382 | INFO     | intersect: -119513027663.35374
[2025-11-25 16:29:20] 2025-11-25 15:28:45,382 | INFO     | chi2: 0.008351095215643867
[2025-11-25 16:29:20] 2025-11-25 15:28:45,382 | INFO     | current memory leak: 67.75 B/s (using 121 data points, chi2=0.01)
[2025-11-25 16:29:20] 2025-11-25 15:28:45,382 | INFO     | could have reported an average CPU frequency of 3887 MHz (9 samples)
[2025-11-25 16:29:20] 2025-11-25 15:28:45,382 | INFO     | ..............................
[2025-11-25 16:29:20] 2025-11-25 15:28:45,382 | INFO     | . Timing measurements:
[2025-11-25 16:29:20] 2025-11-25 15:28:45,382 | INFO     | . get job = 0 s
[2025-11-25 16:29:20] 2025-11-25 15:28:45,382 | INFO     | . initial setup = 1 s
[2025-11-25 16:29:20] 2025-11-25 15:28:45,382 | INFO     | . payload setup = 1 s
[2025-11-25 16:29:20] 2025-11-25 15:28:45,382 | INFO     | . stage-in = 0 s
[2025-11-25 16:29:20] 2025-11-25 15:28:45,382 | INFO     | . payload execution = 9266 s
[2025-11-25 16:29:20] 2025-11-25 15:28:45,382 | INFO     | . stage-out = 0 s
[2025-11-25 16:29:20] 2025-11-25 15:28:45,383 | INFO     | . log creation = 0 s
[2025-11-25 16:29:20] 2025-11-25 15:28:45,383 | INFO     | ..............................
[2025-11-25 16:29:20] 2025-11-25 15:28:45,404 | INFO     | 
[2025-11-25 16:29:20] 2025-11-25 15:28:45,404 | INFO     | job summary report
[2025-11-25 16:29:20] 2025-11-25 15:28:45,404 | INFO     | --------------------------------------------------
[2025-11-25 16:29:20] 2025-11-25 15:28:45,404 | INFO     | PanDA job id: 6895559470
[2025-11-25 16:29:20] 2025-11-25 15:28:45,404 | INFO     | task id: 47556149
[2025-11-25 16:29:20] 2025-11-25 15:28:45,404 | INFO     | errors: (none)
[2025-11-25 16:29:20] 2025-11-25 15:28:45,404 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 16:29:20] 2025-11-25 15:28:45,404 | INFO     | pilot state: finished 
[2025-11-25 16:29:20] 2025-11-25 15:28:45,404 | INFO     | transexitcode: 0
[2025-11-25 16:29:20] 2025-11-25 15:28:45,404 | INFO     | exeerrorcode: 0
[2025-11-25 16:29:20] 2025-11-25 15:28:45,404 | INFO     | exeerrordiag: 
[2025-11-25 16:29:20] 2025-11-25 15:28:45,404 | INFO     | exitcode: 0
[2025-11-25 16:29:20] 2025-11-25 15:28:45,404 | INFO     | exitmsg: OK
[2025-11-25 16:29:20] 2025-11-25 15:28:45,404 | INFO     | cpuconsumptiontime: 108405 s
[2025-11-25 16:29:20] 2025-11-25 15:28:45,404 | INFO     | nevents: 1000
[2025-11-25 16:29:20] 2025-11-25 15:28:45,404 | INFO     | neventsw: 0
[2025-11-25 16:29:20] 2025-11-25 15:28:45,404 | INFO     | pid: 15527
[2025-11-25 16:29:20] 2025-11-25 15:28:45,404 | INFO     | pgrp: 15527
[2025-11-25 16:29:20] 2025-11-25 15:28:45,405 | INFO     | corecount: 12
[2025-11-25 16:29:20] 2025-11-25 15:28:45,405 | INFO     | event service: False
[2025-11-25 16:29:20] 2025-11-25 15:28:45,405 | INFO     | sizes: {0: 2284315, 1: 2284577, 10: 2284605, 9271: 2313927, 9272: 2322921, 9273: 2322977, 9275: 2323415}
[2025-11-25 16:29:20] 2025-11-25 15:28:45,405 | INFO     | --------------------------------------------------
[2025-11-25 16:29:20] 2025-11-25 15:28:45,405 | INFO     | 
[2025-11-25 16:29:20] 2025-11-25 15:28:45,405 | INFO     | executing command: ls -lF /var/lib/boinc/slots/0
[2025-11-25 16:29:20] 2025-11-25 15:28:45,412 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 16:29:20] 2025-11-25 15:28:45,412 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 16:29:20] 2025-11-25 15:28:45,412 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 16:29:20] 2025-11-25 15:28:45,412 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 16:29:20] 2025-11-25 15:28:45,412 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 16:29:20] 2025-11-25 15:28:45,412 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 16:29:20] 2025-11-25 15:28:45,412 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 16:29:20] 2025-11-25 15:28:45,412 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 16:29:20] 2025-11-25 15:28:45,412 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 16:29:20] 2025-11-25 15:28:45,412 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 16:29:20] 2025-11-25 15:28:45,412 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 16:29:20] 2025-11-25 15:28:45,412 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 16:29:20] 2025-11-25 15:28:45,412 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 16:29:20] 2025-11-25 15:28:45,412 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 16:29:20] 2025-11-25 15:28:45,412 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 16:29:20] 2025-11-25 15:28:45,412 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 16:29:20] 2025-11-25 15:28:45,413 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 16:29:20] 2025-11-25 15:28:45,413 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 16:29:20] 2025-11-25 15:28:45,413 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 16:29:20] 2025-11-25 15:28:45,413 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 16:29:20] 2025-11-25 15:28:45,413 | INFO     | job 6895559470 has completed (purged errors)
[2025-11-25 16:29:20] 2025-11-25 15:28:45,413 | INFO     | overall cleanup function is called
[2025-11-25 16:29:20] 2025-11-25 15:28:46,424 | INFO     | --- collectZombieJob: --- 10, [15527]
[2025-11-25 16:29:20] 2025-11-25 15:28:46,424 | INFO     | zombie collector waiting for pid 15527
[2025-11-25 16:29:20] 2025-11-25 15:28:46,424 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 16:29:20] 2025-11-25 15:28:46,424 | INFO     | collected zombie processes
[2025-11-25 16:29:20] 2025-11-25 15:28:46,424 | INFO     | will attempt to kill all subprocesses of pid=15527
[2025-11-25 16:29:20] 2025-11-25 15:28:46,450 | INFO     | process IDs to be killed: [15527] (in reverse order)
[2025-11-25 16:29:20] 2025-11-25 15:28:46,465 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 16:29:20] 2025-11-25 15:28:46,465 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 16:29:20] 2025-11-25 15:28:46,466 | INFO     | did not find any defunct processes belonging to 15527
[2025-11-25 16:29:20] 2025-11-25 15:28:46,468 | INFO     | did not find any defunct processes belonging to 15527
[2025-11-25 16:29:20] 2025-11-25 15:28:46,468 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 16:29:20] 2025-11-25 15:28:46,468 | INFO     | ready for new job
[2025-11-25 16:29:20] 2025-11-25 15:28:46,468 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 16:29:20] 2025-11-25 15:28:46,469 | INFO     | ***************************************
[2025-11-25 16:29:20] 2025-11-25 15:28:46,469 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 16:29:20] 2025-11-25 15:28:46,469 | INFO     | ***************************************
[2025-11-25 16:29:20] 2025-11-25 15:28:46,469 | INFO     | 
[2025-11-25 16:29:20] 2025-11-25 15:28:46,470 | INFO     | architecture information:
[2025-11-25 16:29:20] 2025-11-25 15:28:46,470 | INFO     | executing command: cat /etc/os-release
[2025-11-25 16:29:20] 2025-11-25 15:28:46,476 | INFO     | cat /etc/os-release:
[2025-11-25 16:29:20] NAME="CentOS Linux"
[2025-11-25 16:29:20] VERSION="7 (Core)"
[2025-11-25 16:29:20] ID="centos"
[2025-11-25 16:29:20] ID_LIKE="rhel fedora"
[2025-11-25 16:29:20] VERSION_ID="7"
[2025-11-25 16:29:20] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 16:29:20] ANSI_COLOR="0;31"
[2025-11-25 16:29:20] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 16:29:20] HOME_URL="https://www.centos.org/"
[2025-11-25 16:29:20] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 16:29:20] 
[2025-11-25 16:29:20] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 16:29:20] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 16:29:20] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 16:29:20] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 16:29:20] 
[2025-11-25 16:29:20] 2025-11-25 15:28:46,476 | INFO     | ***************************************
[2025-11-25 16:29:20] 2025-11-25 15:28:46,979 | INFO     | executing command: df -mP /var/lib/boinc/slots/0
[2025-11-25 16:29:20] 2025-11-25 15:28:46,988 | INFO     | sufficient remaining disk space (122072072192 B)
[2025-11-25 16:29:20] 2025-11-25 15:28:46,988 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 16:29:20] 2025-11-25 15:28:46,988 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 16:29:20] 2025-11-25 15:28:46,988 | INFO     | update_server=False
[2025-11-25 16:29:20] 2025-11-25 15:28:46,988 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 16:29:20] 2025-11-25 15:28:46,988 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 16:29:20] 2025-11-25 15:28:47,181 | INFO     | all job control threads have been joined
[2025-11-25 16:29:20] 2025-11-25 15:28:47,291 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 16:29:20] 2025-11-25 15:28:47,292 | INFO     | aborting loop
[2025-11-25 16:29:20] 2025-11-25 15:28:47,371 | INFO     | all data control threads have been joined
[2025-11-25 16:29:20] 2025-11-25 15:28:47,994 | INFO     | [job] retrieve thread has finished
[2025-11-25 16:29:20] 2025-11-25 15:28:47,994 | INFO     | [job] queue monitor thread has finished
[2025-11-25 16:29:20] 2025-11-25 15:28:48,144 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 16:29:20] 2025-11-25 15:28:48,187 | INFO     | [job] control thread has finished
[2025-11-25 16:29:20] 2025-11-25 15:28:48,237 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 16:29:20] 2025-11-25 15:28:48,297 | INFO     | [job] job monitor thread has finished
[2025-11-25 16:29:20] 2025-11-25 15:28:48,376 | INFO     | [data] control thread has finished
[2025-11-25 16:29:20] 2025-11-25 15:28:48,417 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 16:29:20] 2025-11-25 15:28:48,477 | INFO     | all payload control threads have been joined
[2025-11-25 16:29:20] 2025-11-25 15:28:48,486 | INFO     | [payload] failed_post thread has finished
[2025-11-25 16:29:20] 2025-11-25 15:28:49,195 | INFO     | [job] validate thread has finished
[2025-11-25 16:29:20] 2025-11-25 15:28:49,224 | INFO     | [data] copytool_in thread has finished
[2025-11-25 16:29:20] 2025-11-25 15:28:49,247 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 16:29:20] 2025-11-25 15:28:49,248 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 16:29:20] 2025-11-25 15:28:49,278 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 16:29:20] 2025-11-25 15:28:49,422 | INFO     | [payload] validate_post thread has finished
[2025-11-25 16:29:20] 2025-11-25 15:28:49,482 | INFO     | [payload] control thread has finished
[2025-11-25 16:29:20] 2025-11-25 15:28:50,243 | INFO     | [data] copytool_out thread has finished
[2025-11-25 16:29:20] 2025-11-25 15:28:53,250 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 16:29:20] 2025-11-25 15:29:13,324 | INFO     | [monitor] cgroup control has ended
[2025-11-25 16:29:20] 2025-11-25 15:29:14,913 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140559791277888)>', '<ExcThread(monitor, started 140559463188224)>']
[2025-11-25 16:29:20] 2025-11-25 15:29:17,410 | INFO     | PID=8945 has CPU usage=0.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-25 16:29:20] 2025-11-25 15:29:17,411 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 16:29:20] 2025-11-25 15:29:17,411 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 16:29:20] 2025-11-25 15:29:17,411 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 16:29:20] 2025-11-25 15:29:17,411 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 16:29:20] 2025-11-25 15:29:17,411 | INFO     | [monitor] control thread has ended
[2025-11-25 16:29:20] 2025-11-25 15:29:19,938 | INFO     | all workflow threads have been joined
[2025-11-25 16:29:20] 2025-11-25 15:29:19,938 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 16:29:20] 2025-11-25 15:29:19,938 | INFO     | traces error code: 0
[2025-11-25 16:29:20] 2025-11-25 15:29:19,938 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 16:29:20] 2025-11-25 15:29:19,973 [wrapper] ==== pilot stdout END ====
[2025-11-25 16:29:20] 2025-11-25 15:29:19,974 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 16:29:20] 2025-11-25 15:29:19,976 [wrapper] pilotpid: 8945
[2025-11-25 16:29:20] 2025-11-25 15:29:19,976 [wrapper] Pilot exit status: 0
[2025-11-25 16:29:20] 2025-11-25 15:29:19,980 [wrapper] pandaids: 6895559470
[2025-11-25 16:29:20] 2025-11-25 15:29:19,991 [wrapper] cleanup supervisor_pilot   804 8946
[2025-11-25 16:29:20] 2025-11-25 15:29:19,992 [wrapper] Test setup, not cleaning
[2025-11-25 16:29:20] 2025-11-25 15:29:19,993 [wrapper] apfmon messages muted
[2025-11-25 16:29:20] 2025-11-25 15:29:19,994 [wrapper] ==== wrapper stdout END ====
[2025-11-25 16:29:20] 2025-11-25 15:29:19,995 [wrapper] ==== wrapper stderr END ====
[2025-11-25 16:29:20]  *** Error codes and diagnostics ***
[2025-11-25 16:29:20]     "exeErrorCode": 0,
[2025-11-25 16:29:20]     "exeErrorDiag": "",
[2025-11-25 16:29:20]     "pilotErrorCode": 0,
[2025-11-25 16:29:20]     "pilotErrorDiag": "",
[2025-11-25 16:29:20]  *** Listing of results directory ***
[2025-11-25 16:29:20] total 1315480
[2025-11-25 16:29:20] -rw-r--r-- 1 boinc boinc    576529 Nov 24 11:13 pilot3.tar.gz
[2025-11-25 16:29:20] -rw-r--r-- 1 boinc boinc      5112 Nov 24 11:36 queuedata.json
[2025-11-25 16:29:20] -rwx------ 1 boinc boinc     36292 Nov 24 11:38 runpilot2-wrapper.sh
[2025-11-25 16:29:20] -rw-r--r-- 1 boinc boinc       100 Nov 25 13:53 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 16:29:20] -rwxr-xr-x 1 boinc boinc      7986 Nov 25 13:53 run_atlas
[2025-11-25 16:29:20] -rw-r--r-- 1 boinc boinc       105 Nov 25 13:53 job.xml
[2025-11-25 16:29:20] -rw-r--r-- 2 boinc boinc     15847 Nov 25 13:53 start_atlas.sh
[2025-11-25 16:29:20] drwxrwx--x 2 boinc boinc      4096 Nov 25 13:53 shared
[2025-11-25 16:29:20] -rw-r--r-- 2 boinc boinc    590105 Nov 25 13:53 input.tar.gz
[2025-11-25 16:29:20] -rw-r--r-- 1 boinc boinc      7169 Nov 25 13:53 init_data.xml
[2025-11-25 16:29:20] -rw-r--r-- 2 boinc boinc 408858900 Nov 25 13:53 EVNT.47483658._001309.pool.root.1
[2025-11-25 16:29:20] -rw-r--r-- 1 boinc boinc         0 Nov 25 13:53 boinc_lockfile
[2025-11-25 16:29:20] -rw-r--r-- 1 boinc boinc      2786 Nov 25 13:53 pandaJob.out
[2025-11-25 16:29:20] -rw------- 1 boinc boinc    991909 Nov 25 13:53 agis_schedconf.cvmfs.json
[2025-11-25 16:29:20] -rw------- 1 boinc boinc   1516240 Nov 25 13:53 agis_ddmendpoints.agis.ALL.json
[2025-11-25 16:29:20] drwx------ 5 boinc boinc      4096 Nov 25 13:53 pilot3
[2025-11-25 16:29:20] -rw-r--r-- 1 boinc boinc       531 Nov 25 16:25 boinc_task_state.xml
[2025-11-25 16:29:20] -rw------- 1 boinc boinc 927907369 Nov 25 16:28 HITS.47556149._002957.pool.root.1
[2025-11-25 16:29:20] -rw------- 1 boinc boinc        95 Nov 25 16:28 pilot_heartbeat.json
[2025-11-25 16:29:20] -rw------- 1 boinc boinc      1024 Nov 25 16:28 memory_monitor_summary.json
[2025-11-25 16:29:20] -rw------- 1 boinc boinc   1859457 Nov 25 16:28 log.47556149._002957.job.log.tgz.1
[2025-11-25 16:29:20] -rw------- 1 boinc boinc      8560 Nov 25 16:28 heartbeat.json
[2025-11-25 16:29:20] -rw-r--r-- 1 boinc boinc      8192 Nov 25 16:29 boinc_mmap_file
[2025-11-25 16:29:20] -rw-r--r-- 1 boinc boinc        28 Nov 25 16:29 wrapper_checkpoint.txt
[2025-11-25 16:29:20] -rw------- 1 boinc boinc      4746 Nov 25 16:29 pilotlog.txt
[2025-11-25 16:29:20] -rw------- 1 boinc boinc   1322857 Nov 25 16:29 log.47556149._002957.job.log.1
[2025-11-25 16:29:20] -rw-r--r-- 1 boinc boinc       620 Nov 25 16:29 runtime_log
[2025-11-25 16:29:20] -rw------- 1 boinc boinc       353 Nov 25 16:29 output.list
[2025-11-25 16:29:20] -rw------- 1 boinc boinc   3205120 Nov 25 16:29 result.tar.gz
[2025-11-25 16:29:20] -rw-r--r-- 1 boinc boinc      8766 Nov 25 16:29 runtime_log.err
[2025-11-25 16:29:20] -rw------- 1 boinc boinc       648 Nov 25 16:29 bEDNDmr8ih8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm1bLKDmz5mLJn.diag
[2025-11-25 16:29:20] -rw-r--r-- 1 boinc boinc     21471 Nov 25 16:29 stderr.txt
[2025-11-25 16:29:20] HITS file was successfully produced:
[2025-11-25 16:29:20] -rw------- 1 boinc boinc 927907369 Nov 25 16:28 shared/HITS.pool.root.1
[2025-11-25 16:29:20]  *** Contents of shared directory: ***
[2025-11-25 16:29:20] total 1309176
[2025-11-25 16:29:20] -rw-r--r-- 2 boinc boinc     15847 Nov 25 13:53 start_atlas.sh
[2025-11-25 16:29:20] -rw-r--r-- 2 boinc boinc    590105 Nov 25 13:53 input.tar.gz
[2025-11-25 16:29:20] -rw-r--r-- 2 boinc boinc 408858900 Nov 25 13:53 ATLAS.root_0
[2025-11-25 16:29:20] -rw------- 1 boinc boinc 927907369 Nov 25 16:28 HITS.pool.root.1
[2025-11-25 16:29:20] -rw------- 1 boinc boinc   3205120 Nov 25 16:29 result.tar.gz
16:29:21 (5110): run_atlas exited; CPU time 108346.268472
16:29:21 (5110): called boinc_finish(0)

</stderr_txt>
]]>

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