Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
01:07:28 (14629): wrapper (7.7.26015): starting
01:07:28 (14629): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 01:07:28] Arguments: --nthreads 8
[2025-11-25 01:07:28] Threads: 8
[2025-11-25 01:07:28] Checking for CVMFS
[2025-11-25 01:07:28] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 01:07:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 01:07:28] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 01:07:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 01:07:28] 2.11.2.0 2840 65814 80608 153272 1 82 16806305 20275200 1 130560 0 17103745 99.815 4457764 26682 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-25 01:07:28] CVMFS is ok
[2025-11-25 01:07:28] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 01:07:28] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 01:07:28] Further information can be found at the LHC@home message board.
[2025-11-25 01:07:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 01:07:28] Checking for apptainer binary...
[2025-11-25 01:07:28] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 01:07:28] Running /usr/bin/apptainer --version
[2025-11-25 01:07:28] apptainer version 1.3.2-1.el7
[2025-11-25 01:07:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 01:07:30] c-204-39.aglt2.org
[2025-11-25 01:07:30] apptainer works
[2025-11-25 01:07:30] Set ATHENA_PROC_NUMBER=8
[2025-11-25 01:07:30] Set ATHENA_CORE_NUMBER=8
[2025-11-25 01:07:30] Starting ATLAS job with PandaID=6895401429
[2025-11-25 01:07:30] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 13:48:25]  *** The last 200 lines of the pilot log: ***
[2025-11-25 13:48:25] 2025-11-25 18:47:49,492 | INFO     | time since job start (45602s) is within the limit (172800.0s)
[2025-11-25 13:48:25] 2025-11-25 18:47:50,786 | INFO     | monitor loop #3359: job 0:6895401429 is in state 'finished'
[2025-11-25 13:48:25] 2025-11-25 18:47:50,786 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 13:48:25] 2025-11-25 18:47:51,497 | INFO     | time since job start (45604s) is within the limit (172800.0s)
[2025-11-25 13:48:25] 2025-11-25 18:47:51,675 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-25 13:48:25] 2025-11-25 18:47:51,678 | INFO     | found 8 cores (4 cores per socket, 2 sockets) , CPU MHz: 1679.125
[2025-11-25 13:48:25] 2025-11-25 18:47:51,680 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6895401429/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 13:48:25] 2025-11-25 18:47:51,680 | INFO     | extracted standard info from prmon json
[2025-11-25 13:48:25] 2025-11-25 18:47:51,681 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 13:48:25] 2025-11-25 18:47:51,681 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 13:48:25] 2025-11-25 18:47:51,694 | INFO     | fitting pss+swap vs Time
[2025-11-25 13:48:25] 2025-11-25 18:47:51,695 | INFO     | sum of square deviations: 129252632151.87953
[2025-11-25 13:48:25] 2025-11-25 18:47:51,706 | INFO     | sum of deviations: 869133913951.8835
[2025-11-25 13:48:25] 2025-11-25 18:47:51,706 | INFO     | mean x: 1764073652.5341365
[2025-11-25 13:48:25] 2025-11-25 18:47:51,706 | INFO     | mean y: 2875184.416331995
[2025-11-25 13:48:25] 2025-11-25 18:47:51,707 | INFO     | intersect: -11859291276.725975
[2025-11-25 13:48:25] 2025-11-25 18:47:51,707 | INFO     | chi2: 5.406970194319621
[2025-11-25 13:48:25] 2025-11-25 18:47:51,708 | INFO     | sum of square deviations: 126674649692.94333
[2025-11-25 13:48:25] 2025-11-25 18:47:51,720 | INFO     | sum of deviations: 1089184135465.869
[2025-11-25 13:48:25] 2025-11-25 18:47:51,720 | INFO     | mean x: 1764073500.037736
[2025-11-25 13:48:25] 2025-11-25 18:47:51,720 | INFO     | mean y: 2888194.68328841
[2025-11-25 13:48:25] 2025-11-25 18:47:51,720 | INFO     | intersect: -15165110096.168798
[2025-11-25 13:48:25] 2025-11-25 18:47:51,721 | INFO     | chi2: 2.8243909385649975
[2025-11-25 13:48:25] 2025-11-25 18:47:51,721 | INFO     | current chi2=2.8243909385649975 (change=47.763889256644944 %)
[2025-11-25 13:48:25] 2025-11-25 18:47:51,722 | INFO     | sum of square deviations: 124131179508.98792
[2025-11-25 13:48:25] 2025-11-25 18:47:51,733 | INFO     | sum of deviations: 1180019499817.3252
[2025-11-25 13:48:25] 2025-11-25 18:47:51,733 | INFO     | mean x: 1764073347.541384
[2025-11-25 13:48:25] 2025-11-25 18:47:51,733 | INFO     | mean y: 2893639.5630936227
[2025-11-25 13:48:25] 2025-11-25 18:47:51,733 | INFO     | intersect: -16766792731.266357
[2025-11-25 13:48:25] 2025-11-25 18:47:51,734 | INFO     | chi2: 2.292832254536323
[2025-11-25 13:48:25] 2025-11-25 18:47:51,734 | INFO     | current chi2=2.292832254536323 (change=18.820294201154258 %)
[2025-11-25 13:48:25] 2025-11-25 18:47:51,734 | INFO     | right removable region: 736
[2025-11-25 13:48:25] 2025-11-25 18:47:51,735 | INFO     | sum of square deviations: 126674406302.94334
[2025-11-25 13:48:25] 2025-11-25 18:47:51,746 | INFO     | sum of deviations: 676692825882.2074
[2025-11-25 13:48:25] 2025-11-25 18:47:51,746 | INFO     | mean x: 1764073805.037736
[2025-11-25 13:48:25] 2025-11-25 18:47:51,747 | INFO     | mean y: 2886548.3140161727
[2025-11-25 13:48:25] 2025-11-25 18:47:51,747 | INFO     | intersect: -9420769918.967382
[2025-11-25 13:48:25] 2025-11-25 18:47:51,747 | INFO     | chi2: 3.422310386601438
[2025-11-25 13:48:25] 2025-11-25 18:47:51,748 | INFO     | current chi2=3.422310386601438 (change=36.70558069292114 %)
[2025-11-25 13:48:25] 2025-11-25 18:47:51,748 | INFO     | sum of square deviations: 124130783375.14789
[2025-11-25 13:48:25] 2025-11-25 18:47:51,759 | INFO     | sum of deviations: 630715384362.2701
[2025-11-25 13:48:25] 2025-11-25 18:47:51,760 | INFO     | mean x: 1764073957.5386703
[2025-11-25 13:48:25] 2025-11-25 18:47:51,760 | INFO     | mean y: 2889304.744911805
[2025-11-25 13:48:25] 2025-11-25 18:47:51,760 | INFO     | intersect: -8960468163.240196
[2025-11-25 13:48:25] 2025-11-25 18:47:51,761 | INFO     | chi2: 3.374608707073717
[2025-11-25 13:48:25] 2025-11-25 18:47:51,761 | INFO     | current chi2=3.374608707073717 (change=1.3938443372779936 %)
[2025-11-25 13:48:25] 2025-11-25 18:47:51,761 | INFO     | left removable region: 20
[2025-11-25 13:48:25] 2025-11-25 18:47:51,762 | INFO     | sum of square deviations: 113819612501.47897
[2025-11-25 13:48:25] 2025-11-25 18:47:51,772 | INFO     | sum of deviations: 873368768490.9994
[2025-11-25 13:48:25] 2025-11-25 18:47:51,772 | INFO     | mean x: 1764073927.0460894
[2025-11-25 13:48:25] 2025-11-25 18:47:51,772 | INFO     | mean y: 2914130.303072626
[2025-11-25 13:48:25] 2025-11-25 18:47:51,772 | INFO     | intersect: -13533303744.022448
[2025-11-25 13:48:25] 2025-11-25 18:47:51,773 | INFO     | chi2: 0.1346459801422952
[2025-11-25 13:48:25] 2025-11-25 18:47:51,773 | INFO     | current memory leak: 7.67 B/s (using 716 data points, chi2=0.13)
[2025-11-25 13:48:25] 2025-11-25 18:47:51,774 | INFO     | could have reported an average CPU frequency of 2154 MHz (29 samples)
[2025-11-25 13:48:25] 2025-11-25 18:47:51,774 | INFO     | ..............................
[2025-11-25 13:48:25] 2025-11-25 18:47:51,774 | INFO     | . Timing measurements:
[2025-11-25 13:48:25] 2025-11-25 18:47:51,774 | INFO     | . get job = 0 s
[2025-11-25 13:48:25] 2025-11-25 18:47:51,774 | INFO     | . initial setup = 2 s
[2025-11-25 13:48:25] 2025-11-25 18:47:51,775 | INFO     | . payload setup = 8 s
[2025-11-25 13:48:25] 2025-11-25 18:47:51,775 | INFO     | . stage-in = 0 s
[2025-11-25 13:48:25] 2025-11-25 18:47:51,775 | INFO     | . payload execution = 45556 s
[2025-11-25 13:48:25] 2025-11-25 18:47:51,775 | INFO     | . stage-out = 9 s
[2025-11-25 13:48:25] 2025-11-25 18:47:51,775 | INFO     | . log creation = 0 s
[2025-11-25 13:48:25] 2025-11-25 18:47:51,775 | INFO     | ..............................
[2025-11-25 13:48:25] 2025-11-25 18:47:52,039 | INFO     | 
[2025-11-25 13:48:25] 2025-11-25 18:47:52,039 | INFO     | job summary report
[2025-11-25 13:48:25] 2025-11-25 18:47:52,039 | INFO     | --------------------------------------------------
[2025-11-25 13:48:25] 2025-11-25 18:47:52,040 | INFO     | PanDA job id: 6895401429
[2025-11-25 13:48:25] 2025-11-25 18:47:52,040 | INFO     | task id: 47556149
[2025-11-25 13:48:25] 2025-11-25 18:47:52,040 | INFO     | errors: (none)
[2025-11-25 13:48:25] 2025-11-25 18:47:52,040 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 13:48:25] 2025-11-25 18:47:52,040 | INFO     | pilot state: finished 
[2025-11-25 13:48:25] 2025-11-25 18:47:52,040 | INFO     | transexitcode: 0
[2025-11-25 13:48:25] 2025-11-25 18:47:52,040 | INFO     | exeerrorcode: 0
[2025-11-25 13:48:25] 2025-11-25 18:47:52,040 | INFO     | exeerrordiag: 
[2025-11-25 13:48:25] 2025-11-25 18:47:52,040 | INFO     | exitcode: 0
[2025-11-25 13:48:25] 2025-11-25 18:47:52,041 | INFO     | exitmsg: OK
[2025-11-25 13:48:25] 2025-11-25 18:47:52,041 | INFO     | cpuconsumptiontime: 352524 s
[2025-11-25 13:48:25] 2025-11-25 18:47:52,041 | INFO     | nevents: 1000
[2025-11-25 13:48:25] 2025-11-25 18:47:52,041 | INFO     | neventsw: 0
[2025-11-25 13:48:25] 2025-11-25 18:47:52,041 | INFO     | pid: 25667
[2025-11-25 13:48:25] 2025-11-25 18:47:52,041 | INFO     | pgrp: 25667
[2025-11-25 13:48:25] 2025-11-25 18:47:52,041 | INFO     | corecount: 8
[2025-11-25 13:48:25] 2025-11-25 18:47:52,041 | INFO     | event service: False
[2025-11-25 13:48:25] 2025-11-25 18:47:52,041 | INFO     | sizes: {0: 2284259, 6: 2284521, 11: 2284549, 45568: 2330700, 45569: 2330699, 45578: 2340000, 45581: 2340184, 45587: 2340208}
[2025-11-25 13:48:25] 2025-11-25 18:47:52,042 | INFO     | --------------------------------------------------
[2025-11-25 13:48:25] 2025-11-25 18:47:52,042 | INFO     | 
[2025-11-25 13:48:25] 2025-11-25 18:47:52,042 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-25 13:48:25] 2025-11-25 18:47:52,072 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 13:48:25] 2025-11-25 18:47:52,073 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 13:48:25] 2025-11-25 18:47:52,073 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 13:48:25] 2025-11-25 18:47:52,073 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 13:48:25] 2025-11-25 18:47:52,073 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 13:48:25] 2025-11-25 18:47:52,074 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 13:48:25] 2025-11-25 18:47:52,074 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 13:48:25] 2025-11-25 18:47:52,074 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 13:48:25] 2025-11-25 18:47:52,074 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 13:48:25] 2025-11-25 18:47:52,074 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 13:48:25] 2025-11-25 18:47:52,074 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 13:48:25] 2025-11-25 18:47:52,075 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 13:48:25] 2025-11-25 18:47:52,075 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 13:48:25] 2025-11-25 18:47:52,075 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 13:48:25] 2025-11-25 18:47:52,075 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 13:48:25] 2025-11-25 18:47:52,075 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 13:48:25] 2025-11-25 18:47:52,076 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 13:48:25] 2025-11-25 18:47:52,076 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 13:48:25] 2025-11-25 18:47:52,076 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 13:48:25] 2025-11-25 18:47:52,076 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 13:48:25] 2025-11-25 18:47:52,076 | INFO     | job 6895401429 has completed (purged errors)
[2025-11-25 13:48:25] 2025-11-25 18:47:52,077 | INFO     | overall cleanup function is called
[2025-11-25 13:48:25] 2025-11-25 18:47:53,090 | INFO     | --- collectZombieJob: --- 10, [25667]
[2025-11-25 13:48:25] 2025-11-25 18:47:53,091 | INFO     | zombie collector waiting for pid 25667
[2025-11-25 13:48:25] 2025-11-25 18:47:53,091 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 13:48:25] 2025-11-25 18:47:53,091 | INFO     | collected zombie processes
[2025-11-25 13:48:25] 2025-11-25 18:47:53,091 | INFO     | will attempt to kill all subprocesses of pid=25667
[2025-11-25 13:48:25] 2025-11-25 18:47:53,179 | INFO     | process IDs to be killed: [25667] (in reverse order)
[2025-11-25 13:48:25] 2025-11-25 18:47:53,242 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 13:48:25] 2025-11-25 18:47:53,242 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 13:48:25] 2025-11-25 18:47:53,246 | INFO     | did not find any defunct processes belonging to 25667
[2025-11-25 13:48:25] 2025-11-25 18:47:53,249 | INFO     | did not find any defunct processes belonging to 25667
[2025-11-25 13:48:25] 2025-11-25 18:47:53,252 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 13:48:25] 2025-11-25 18:47:53,252 | INFO     | ready for new job
[2025-11-25 13:48:25] 2025-11-25 18:47:53,252 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 13:48:25] 2025-11-25 18:47:53,255 | INFO     | ***************************************
[2025-11-25 13:48:25] 2025-11-25 18:47:53,255 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 13:48:25] 2025-11-25 18:47:53,255 | INFO     | ***************************************
[2025-11-25 13:48:25] 2025-11-25 18:47:53,255 | INFO     | 
[2025-11-25 13:48:25] 2025-11-25 18:47:53,256 | INFO     | architecture information:
[2025-11-25 13:48:25] 2025-11-25 18:47:53,257 | INFO     | executing command: cat /etc/os-release
[2025-11-25 13:48:25] 2025-11-25 18:47:53,275 | INFO     | cat /etc/os-release:
[2025-11-25 13:48:25] NAME="CentOS Linux"
[2025-11-25 13:48:25] VERSION="7 (Core)"
[2025-11-25 13:48:25] ID="centos"
[2025-11-25 13:48:25] ID_LIKE="rhel fedora"
[2025-11-25 13:48:25] VERSION_ID="7"
[2025-11-25 13:48:25] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 13:48:25] ANSI_COLOR="0;31"
[2025-11-25 13:48:25] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 13:48:25] HOME_URL="https://www.centos.org/"
[2025-11-25 13:48:25] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 13:48:25] 
[2025-11-25 13:48:25] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 13:48:25] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 13:48:25] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 13:48:25] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 13:48:25] 
[2025-11-25 13:48:25] 2025-11-25 18:47:53,275 | INFO     | ***************************************
[2025-11-25 13:48:25] 2025-11-25 18:47:53,778 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-25 13:48:25] 2025-11-25 18:47:53,798 | INFO     | sufficient remaining disk space (17430478848 B)
[2025-11-25 13:48:25] 2025-11-25 18:47:53,799 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 13:48:25] 2025-11-25 18:47:53,799 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 13:48:25] 2025-11-25 18:47:53,799 | INFO     | update_server=False
[2025-11-25 13:48:25] 2025-11-25 18:47:53,799 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 13:48:25] 2025-11-25 18:47:53,800 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 13:48:25] 2025-11-25 18:47:53,880 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 13:48:25] 2025-11-25 18:47:54,022 | INFO     | all payload control threads have been joined
[2025-11-25 13:48:25] 2025-11-25 18:47:54,300 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 13:48:25] 2025-11-25 18:47:54,300 | INFO     | aborting loop
[2025-11-25 13:48:25] 2025-11-25 18:47:54,689 | INFO     | all data control threads have been joined
[2025-11-25 13:48:25] 2025-11-25 18:47:54,805 | INFO     | [job] retrieve thread has finished
[2025-11-25 13:48:25] 2025-11-25 18:47:54,806 | INFO     | [job] queue monitor thread has finished
[2025-11-25 13:48:25] 2025-11-25 18:47:55,027 | INFO     | [payload] control thread has finished
[2025-11-25 13:48:25] 2025-11-25 18:47:55,241 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 13:48:25] 2025-11-25 18:47:55,294 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 13:48:25] 2025-11-25 18:47:55,306 | INFO     | [job] job monitor thread has finished
[2025-11-25 13:48:25] 2025-11-25 18:47:55,408 | INFO     | all job control threads have been joined
[2025-11-25 13:48:25] 2025-11-25 18:47:55,424 | INFO     | [payload] validate_post thread has finished
[2025-11-25 13:48:25] 2025-11-25 18:47:55,530 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 13:48:25] 2025-11-25 18:47:55,695 | INFO     | [data] control thread has finished
[2025-11-25 13:48:25] 2025-11-25 18:47:55,835 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 13:48:25] 2025-11-25 18:47:55,884 | INFO     | [data] copytool_out thread has finished
[2025-11-25 13:48:25] 2025-11-25 18:47:56,058 | INFO     | [data] copytool_in thread has finished
[2025-11-25 13:48:25] 2025-11-25 18:47:56,130 | INFO     | [job] validate thread has finished
[2025-11-25 13:48:25] 2025-11-25 18:47:56,322 | INFO     | [payload] failed_post thread has finished
[2025-11-25 13:48:25] 2025-11-25 18:47:56,414 | INFO     | [job] control thread has finished
[2025-11-25 13:48:25] 2025-11-25 18:47:56,501 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 13:48:25] 2025-11-25 18:48:00,507 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 13:48:25] 2025-11-25 18:48:02,465 | INFO     | [monitor] cgroup control has ended
[2025-11-25 13:48:25] 2025-11-25 18:48:03,575 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140621567211328)>', '<ExcThread(monitor, started 140620869900032)>']
[2025-11-25 13:48:25] 2025-11-25 18:48:08,584 | INFO     | all workflow threads have been joined
[2025-11-25 13:48:25] 2025-11-25 18:48:08,584 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 13:48:25] 2025-11-25 18:48:08,585 | INFO     | traces error code: 0
[2025-11-25 13:48:25] 2025-11-25 18:48:08,585 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 13:48:25] 2025-11-25 18:48:24,718 | INFO     | PID=18305 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-25 13:48:25] 2025-11-25 18:48:24,719 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 13:48:25] 2025-11-25 18:48:24,719 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 13:48:25] 2025-11-25 18:48:24,719 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 13:48:25] 2025-11-25 18:48:24,719 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 13:48:25] 2025-11-25 18:48:24,719 | INFO     | [monitor] control thread has ended
[2025-11-25 13:48:25] 2025-11-25 18:48:24,819 [wrapper] ==== pilot stdout END ====
[2025-11-25 13:48:25] 2025-11-25 18:48:24,824 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 13:48:25] 2025-11-25 18:48:24,829 [wrapper] pilotpid: 18305
[2025-11-25 13:48:25] 2025-11-25 18:48:24,833 [wrapper] Pilot exit status: 0
[2025-11-25 13:48:25] 2025-11-25 18:48:24,849 [wrapper] pandaids: 6895401429
[2025-11-25 13:48:25] 2025-11-25 18:48:24,892 [wrapper] cleanup supervisor_pilot  4877 18306
[2025-11-25 13:48:25] 2025-11-25 18:48:24,897 [wrapper] Test setup, not cleaning
[2025-11-25 13:48:25] 2025-11-25 18:48:24,902 [wrapper] apfmon messages muted
[2025-11-25 13:48:25] 2025-11-25 18:48:24,907 [wrapper] ==== wrapper stdout END ====
[2025-11-25 13:48:25] 2025-11-25 18:48:24,911 [wrapper] ==== wrapper stderr END ====
[2025-11-25 13:48:25]  *** Error codes and diagnostics ***
[2025-11-25 13:48:25]     "exeErrorCode": 0,
[2025-11-25 13:48:25]     "exeErrorDiag": "",
[2025-11-25 13:48:25]     "pilotErrorCode": 0,
[2025-11-25 13:48:25]     "pilotErrorDiag": "",
[2025-11-25 13:48:25]  *** Listing of results directory ***
[2025-11-25 13:48:25] total 1323924
[2025-11-25 13:48:25] -rw-r--r-- 1 boincer umatlas    598293 Nov  6 03:41 pilot3.tar.gz
[2025-11-25 13:48:25] -rw-r--r-- 1 boincer umatlas      5112 Nov 24 02:33 queuedata.json
[2025-11-25 13:48:25] -rwx------ 1 boincer umatlas     36292 Nov 24 02:34 runpilot2-wrapper.sh
[2025-11-25 13:48:25] -rw-r--r-- 1 boincer umatlas       100 Nov 25 01:07 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 13:48:25] -rwxr-xr-x 1 boincer umatlas      7986 Nov 25 01:07 run_atlas
[2025-11-25 13:48:25] -rw-r--r-- 1 boincer umatlas       105 Nov 25 01:07 job.xml
[2025-11-25 13:48:25] -rw-r--r-- 2 boincer umatlas 409767628 Nov 25 01:07 EVNT.47483658._001263.pool.root.1
[2025-11-25 13:48:25] -rw-r--r-- 2 boincer umatlas     15847 Nov 25 01:07 start_atlas.sh
[2025-11-25 13:48:25] drwxrwx--x 2 boincer umatlas      4096 Nov 25 01:07 shared
[2025-11-25 13:48:25] -rw-r--r-- 2 boincer umatlas    611288 Nov 25 01:07 input.tar.gz
[2025-11-25 13:48:25] -rw-r--r-- 1 boincer umatlas         0 Nov 25 01:07 boinc_lockfile
[2025-11-25 13:48:25] -rw-r--r-- 1 boincer umatlas      2785 Nov 25 01:07 pandaJob.out
[2025-11-25 13:48:25] -rw------- 1 boincer umatlas        57 Nov 25 01:07 setup.sh.local
[2025-11-25 13:48:25] -rw------- 1 boincer umatlas    991801 Nov 25 01:07 agis_schedconf.cvmfs.json
[2025-11-25 13:48:25] drwx------ 7 boincer umatlas      4096 Nov 25 01:07 pilot3
[2025-11-25 13:48:25] -rw-r--r-- 1 boincer umatlas       532 Nov 25 13:36 boinc_task_state.xml
[2025-11-25 13:48:25] -rw-r--r-- 1 boincer umatlas      5913 Nov 25 13:46 init_data.xml
[2025-11-25 13:48:25] -rw------- 1 boincer umatlas 925395482 Nov 25 13:46 HITS.47556149._002493.pool.root.1
[2025-11-25 13:48:25] -rw------- 1 boincer umatlas      1062 Nov 25 13:47 memory_monitor_summary.json
[2025-11-25 13:48:25] -rw------- 1 boincer umatlas   1516240 Nov 25 13:47 agis_ddmendpoints.agis.ALL.json
[2025-11-25 13:48:25] -rw------- 1 boincer umatlas   1987772 Nov 25 13:47 log.47556149._002493.job.log.tgz.1
[2025-11-25 13:48:25] -rw------- 1 boincer umatlas      8671 Nov 25 13:47 heartbeat.json
[2025-11-25 13:48:25] -rw-r--r-- 1 boincer umatlas      8192 Nov 25 13:47 boinc_mmap_file
[2025-11-25 13:48:25] -rw-r--r-- 1 boincer umatlas        29 Nov 25 13:47 wrapper_checkpoint.txt
[2025-11-25 13:48:25] -rw------- 1 boincer umatlas        95 Nov 25 13:48 pilot_heartbeat.json
[2025-11-25 13:48:25] -rw------- 1 boincer umatlas       745 Nov 25 13:48 pilotlog.txt
[2025-11-25 13:48:25] -rw------- 1 boincer umatlas   6296315 Nov 25 13:48 log.47556149._002493.job.log.1
[2025-11-25 13:48:25] -rw------- 1 boincer umatlas       353 Nov 25 13:48 output.list
[2025-11-25 13:48:25] -rw-r--r-- 1 boincer umatlas       620 Nov 25 13:48 runtime_log
[2025-11-25 13:48:25] -rw------- 1 boincer umatlas   8304640 Nov 25 13:48 result.tar.gz
[2025-11-25 13:48:25] -rw------- 1 boincer umatlas       668 Nov 25 13:48 yiDNDmyGgh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmTxIKDmbMGUwn.diag
[2025-11-25 13:48:25] -rw-r--r-- 1 boincer umatlas      9343 Nov 25 13:48 runtime_log.err
[2025-11-25 13:48:25] -rw-r--r-- 1 boincer umatlas     21317 Nov 25 13:48 stderr.txt
[2025-11-25 13:48:25] HITS file was successfully produced:
[2025-11-25 13:48:25] -rw------- 1 boincer umatlas 925395482 Nov 25 13:46 shared/HITS.pool.root.1
[2025-11-25 13:48:25]  *** Contents of shared directory: ***
[2025-11-25 13:48:25] total 1312608
[2025-11-25 13:48:25] -rw-r--r-- 2 boincer umatlas 409767628 Nov 25 01:07 ATLAS.root_0
[2025-11-25 13:48:25] -rw-r--r-- 2 boincer umatlas     15847 Nov 25 01:07 start_atlas.sh
[2025-11-25 13:48:25] -rw-r--r-- 2 boincer umatlas    611288 Nov 25 01:07 input.tar.gz
[2025-11-25 13:48:25] -rw------- 1 boincer umatlas 925395482 Nov 25 13:46 HITS.pool.root.1
[2025-11-25 13:48:25] -rw------- 1 boincer umatlas   8304640 Nov 25 13:48 result.tar.gz
13:48:26 (14629): run_atlas exited; CPU time 348661.790420
13:48:26 (14629): called boinc_finish(0)

</stderr_txt>
]]>

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