Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
01:54:02 (3798083): wrapper (7.7.26015): starting
01:54:02 (3798083): wrapper: running run_atlas (--nthreads 2)
[2025-11-25 01:54:02] Arguments: --nthreads 2
[2025-11-25 01:54:02] Threads: 2
[2025-11-25 01:54:02] Checking for CVMFS
[2025-11-25 01:54:02] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 01:54:04] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 01:54:04] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 01:54:04] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 01:54:04] 2.13.3.0 3137086 1936 53420 153264 1 18 2905295 4096000 922 130560 0 1195443 99.557 528270 1460 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2025-11-25 01:54:04] CVMFS is ok
[2025-11-25 01:54:04] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 01:54:04] Small home clusters do not require a local http proxy but it is suggested if
[2025-11-25 01:54:04] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-11-25 01:54:04] Further information can be found at the LHC@home message board.
[2025-11-25 01:54:04] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 01:54:04] Checking for apptainer binary...
[2025-11-25 01:54:04] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 01:54:04] Running /usr/bin/apptainer --version
[2025-11-25 01:54:04] apptainer version 1.4.4
[2025-11-25 01:54:04] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 01:54:04] Ryzen-9-7950X3D-Zen4-Ubu24
[2025-11-25 01:54:04] apptainer works
[2025-11-25 01:54:04] Set ATHENA_PROC_NUMBER=2
[2025-11-25 01:54:04] Set ATHENA_CORE_NUMBER=2
[2025-11-25 01:54:04] Starting ATLAS job with PandaID=6895377449
[2025-11-25 01:54:04] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/11 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 16:53:04]  *** The last 200 lines of the pilot log: ***
[2025-11-25 16:53:04] 2025-11-25 15:52:30,583 | INFO     | monitor loop #4075: job 0:6895377449 is in state 'finished'
[2025-11-25 16:53:04] 2025-11-25 15:52:30,583 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 16:53:04] 2025-11-25 15:52:31,149 | INFO     | time since job start (53897s) is within the limit (172800.0s)
[2025-11-25 16:53:04] 2025-11-25 15:52:31,709 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-25 16:53:04] 2025-11-25 15:52:31,711 | INFO     | found 16 cores (16 cores per socket, 1 socket) HT, CPU MHz: 4156.176625
[2025-11-25 16:53:04] 2025-11-25 15:52:31,714 | INFO     | using path: /var/lib/boinc-client/slots/11/PanDA_Pilot-6895377449/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 16:53:04] 2025-11-25 15:52:31,714 | INFO     | extracted standard info from prmon json
[2025-11-25 16:53:04] 2025-11-25 15:52:31,714 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 16:53:04] 2025-11-25 15:52:31,714 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 16:53:04] 2025-11-25 15:52:31,721 | INFO     | fitting pss+swap vs Time
[2025-11-25 16:53:04] 2025-11-25 15:52:31,721 | INFO     | sum of square deviations: 213481368282.0
[2025-11-25 16:53:04] 2025-11-25 15:52:31,730 | INFO     | sum of deviations: 81382837924.00002
[2025-11-25 16:53:04] 2025-11-25 15:52:31,730 | INFO     | mean x: 1764058980.0
[2025-11-25 16:53:04] 2025-11-25 15:52:31,730 | INFO     | mean y: 1955494.7078142695
[2025-11-25 16:53:04] 2025-11-25 15:52:31,730 | INFO     | intersect: -670534695.9493608
[2025-11-25 16:53:04] 2025-11-25 15:52:31,731 | INFO     | chi2: 2.3756570334543006
[2025-11-25 16:53:04] 2025-11-25 15:52:31,731 | INFO     | sum of square deviations: 209875337879.5
[2025-11-25 16:53:04] 2025-11-25 15:52:31,739 | INFO     | sum of deviations: 155455849885.49997
[2025-11-25 16:53:04] 2025-11-25 15:52:31,739 | INFO     | mean x: 1764058827.5
[2025-11-25 16:53:04] 2025-11-25 15:52:31,739 | INFO     | mean y: 1958617.7687927107
[2025-11-25 16:53:04] 2025-11-25 15:52:31,739 | INFO     | intersect: -1304689733.8087626
[2025-11-25 16:53:04] 2025-11-25 15:52:31,739 | INFO     | chi2: 1.4335976385561637
[2025-11-25 16:53:04] 2025-11-25 15:52:31,739 | INFO     | current chi2=1.4335976385561637 (change=39.65468843490193 %)
[2025-11-25 16:53:04] 2025-11-25 15:52:31,740 | INFO     | sum of square deviations: 206310145452.0
[2025-11-25 16:53:04] 2025-11-25 15:52:31,747 | INFO     | sum of deviations: 153685283253.0
[2025-11-25 16:53:04] 2025-11-25 15:52:31,748 | INFO     | mean x: 1764058675.0
[2025-11-25 16:53:04] 2025-11-25 15:52:31,748 | INFO     | mean y: 1958542.0366552118
[2025-11-25 16:53:04] 2025-11-25 15:52:31,748 | INFO     | intersect: -1312130285.482315
[2025-11-25 16:53:04] 2025-11-25 15:52:31,748 | INFO     | chi2: 1.4336456765632632
[2025-11-25 16:53:04] 2025-11-25 15:52:31,748 | INFO     | current chi2=1.4336456765632632 (change=-0.003350870970176594 %)
[2025-11-25 16:53:04] 2025-11-25 15:52:31,748 | INFO     | right removable region: 872
[2025-11-25 16:53:04] 2025-11-25 15:52:31,748 | INFO     | sum of square deviations: 209875337879.5
[2025-11-25 16:53:04] 2025-11-25 15:52:31,756 | INFO     | sum of deviations: -9079545945.499992
[2025-11-25 16:53:04] 2025-11-25 15:52:31,756 | INFO     | mean x: 1764059132.5
[2025-11-25 16:53:04] 2025-11-25 15:52:31,756 | INFO     | mean y: 1959307.3291571755
[2025-11-25 16:53:04] 2025-11-25 15:52:31,756 | INFO     | intersect: 78275353.3493365
[2025-11-25 16:53:04] 2025-11-25 15:52:31,757 | INFO     | chi2: 1.047023170356639
[2025-11-25 16:53:04] 2025-11-25 15:52:31,757 | INFO     | current chi2=1.047023170356639 (change=55.92700648231932 %)
[2025-11-25 16:53:04] 2025-11-25 15:52:31,757 | INFO     | sum of square deviations: 206310145452.0
[2025-11-25 16:53:04] 2025-11-25 15:52:31,765 | INFO     | sum of deviations: 3826522862.999996
[2025-11-25 16:53:04] 2025-11-25 15:52:31,765 | INFO     | mean x: 1764059285.0
[2025-11-25 16:53:04] 2025-11-25 15:52:31,765 | INFO     | mean y: 1958755.1798396334
[2025-11-25 16:53:04] 2025-11-25 15:52:31,765 | INFO     | intersect: -30760009.915066604
[2025-11-25 16:53:04] 2025-11-25 15:52:31,765 | INFO     | chi2: 1.0340279984698433
[2025-11-25 16:53:04] 2025-11-25 15:52:31,765 | INFO     | current chi2=1.0340279984698433 (change=1.2411541840444023 %)
[2025-11-25 16:53:04] 2025-11-25 15:52:31,765 | INFO     | left removable region: 20
[2025-11-25 16:53:04] 2025-11-25 15:52:31,766 | INFO     | sum of square deviations: 191777039473.0
[2025-11-25 16:53:04] 2025-11-25 15:52:31,773 | INFO     | sum of deviations: 107468306689.50002
[2025-11-25 16:53:04] 2025-11-25 15:52:31,773 | INFO     | mean x: 1764059254.5
[2025-11-25 16:53:04] 2025-11-25 15:52:31,773 | INFO     | mean y: 1960452.5105633803
[2025-11-25 16:53:04] 2025-11-25 15:52:31,773 | INFO     | intersect: -986585733.7379084
[2025-11-25 16:53:04] 2025-11-25 15:52:31,774 | INFO     | chi2: 0.03995174894659298
[2025-11-25 16:53:04] 2025-11-25 15:52:31,774 | INFO     | current memory leak: 0.56 B/s (using 852 data points, chi2=0.04)
[2025-11-25 16:53:04] 2025-11-25 15:52:31,774 | INFO     | could have reported an average CPU frequency of 4425 MHz (33 samples)
[2025-11-25 16:53:04] 2025-11-25 15:52:31,774 | INFO     | ..............................
[2025-11-25 16:53:04] 2025-11-25 15:52:31,774 | INFO     | . Timing measurements:
[2025-11-25 16:53:04] 2025-11-25 15:52:31,774 | INFO     | . get job = 0 s
[2025-11-25 16:53:04] 2025-11-25 15:52:31,774 | INFO     | . initial setup = 1 s
[2025-11-25 16:53:04] 2025-11-25 15:52:31,774 | INFO     | . payload setup = 5 s
[2025-11-25 16:53:04] 2025-11-25 15:52:31,774 | INFO     | . stage-in = 0 s
[2025-11-25 16:53:04] 2025-11-25 15:52:31,774 | INFO     | . payload execution = 53864 s
[2025-11-25 16:53:04] 2025-11-25 15:52:31,774 | INFO     | . stage-out = 1 s
[2025-11-25 16:53:04] 2025-11-25 15:52:31,774 | INFO     | . log creation = 0 s
[2025-11-25 16:53:04] 2025-11-25 15:52:31,774 | INFO     | ..............................
[2025-11-25 16:53:04] 2025-11-25 15:52:31,815 | INFO     | 
[2025-11-25 16:53:04] 2025-11-25 15:52:31,815 | INFO     | job summary report
[2025-11-25 16:53:04] 2025-11-25 15:52:31,815 | INFO     | --------------------------------------------------
[2025-11-25 16:53:04] 2025-11-25 15:52:31,815 | INFO     | PanDA job id: 6895377449
[2025-11-25 16:53:04] 2025-11-25 15:52:31,815 | INFO     | task id: 47556137
[2025-11-25 16:53:04] 2025-11-25 15:52:31,815 | INFO     | errors: (none)
[2025-11-25 16:53:04] 2025-11-25 15:52:31,815 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 16:53:04] 2025-11-25 15:52:31,815 | INFO     | pilot state: finished 
[2025-11-25 16:53:04] 2025-11-25 15:52:31,815 | INFO     | transexitcode: 0
[2025-11-25 16:53:04] 2025-11-25 15:52:31,815 | INFO     | exeerrorcode: 0
[2025-11-25 16:53:04] 2025-11-25 15:52:31,815 | INFO     | exeerrordiag: 
[2025-11-25 16:53:04] 2025-11-25 15:52:31,815 | INFO     | exitcode: 0
[2025-11-25 16:53:04] 2025-11-25 15:52:31,815 | INFO     | exitmsg: OK
[2025-11-25 16:53:04] 2025-11-25 15:52:31,815 | INFO     | cpuconsumptiontime: 107715 s
[2025-11-25 16:53:04] 2025-11-25 15:52:31,815 | INFO     | nevents: 1000
[2025-11-25 16:53:04] 2025-11-25 15:52:31,815 | INFO     | neventsw: 0
[2025-11-25 16:53:04] 2025-11-25 15:52:31,815 | INFO     | pid: 3808976
[2025-11-25 16:53:04] 2025-11-25 15:52:31,815 | INFO     | pgrp: 3808976
[2025-11-25 16:53:04] 2025-11-25 15:52:31,815 | INFO     | corecount: 2
[2025-11-25 16:53:04] 2025-11-25 15:52:31,815 | INFO     | event service: False
[2025-11-25 16:53:04] 2025-11-25 15:52:31,815 | INFO     | sizes: {0: 2284203, 1: 2284345, 4: 2284607, 11: 2284635, 53872: 2335648, 53875: 2344663, 53876: 2344847, 53882: 2345157}
[2025-11-25 16:53:04] 2025-11-25 15:52:31,815 | INFO     | --------------------------------------------------
[2025-11-25 16:53:04] 2025-11-25 15:52:31,815 | INFO     | 
[2025-11-25 16:53:04] 2025-11-25 15:52:31,815 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/11
[2025-11-25 16:53:04] 2025-11-25 15:52:31,840 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 16:53:04] 2025-11-25 15:52:31,841 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 16:53:04] 2025-11-25 15:52:31,841 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 16:53:04] 2025-11-25 15:52:31,841 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 16:53:04] 2025-11-25 15:52:31,841 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 16:53:04] 2025-11-25 15:52:31,841 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 16:53:04] 2025-11-25 15:52:31,841 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 16:53:04] 2025-11-25 15:52:31,841 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 16:53:04] 2025-11-25 15:52:31,841 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 16:53:04] 2025-11-25 15:52:31,841 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 16:53:04] 2025-11-25 15:52:31,841 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 16:53:04] 2025-11-25 15:52:31,841 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 16:53:04] 2025-11-25 15:52:31,841 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 16:53:04] 2025-11-25 15:52:31,841 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 16:53:04] 2025-11-25 15:52:31,841 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 16:53:04] 2025-11-25 15:52:31,841 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 16:53:04] 2025-11-25 15:52:31,841 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 16:53:04] 2025-11-25 15:52:31,841 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 16:53:04] 2025-11-25 15:52:31,841 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 16:53:04] 2025-11-25 15:52:31,841 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 16:53:04] 2025-11-25 15:52:31,841 | INFO     | job 6895377449 has completed (purged errors)
[2025-11-25 16:53:04] 2025-11-25 15:52:31,841 | INFO     | overall cleanup function is called
[2025-11-25 16:53:04] 2025-11-25 15:52:32,852 | INFO     | --- collectZombieJob: --- 10, [3808976]
[2025-11-25 16:53:04] 2025-11-25 15:52:32,854 | INFO     | zombie collector waiting for pid 3808976
[2025-11-25 16:53:04] 2025-11-25 15:52:32,854 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 16:53:04] 2025-11-25 15:52:32,854 | INFO     | collected zombie processes
[2025-11-25 16:53:04] 2025-11-25 15:52:32,854 | INFO     | will attempt to kill all subprocesses of pid=3808976
[2025-11-25 16:53:04] 2025-11-25 15:52:32,923 | INFO     | process IDs to be killed: [3808976] (in reverse order)
[2025-11-25 16:53:04] 2025-11-25 15:52:32,970 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 16:53:04] 2025-11-25 15:52:32,970 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 16:53:04] 2025-11-25 15:52:32,973 | INFO     | did not find any defunct processes belonging to 3808976
[2025-11-25 16:53:04] 2025-11-25 15:52:32,975 | INFO     | did not find any defunct processes belonging to 3808976
[2025-11-25 16:53:04] 2025-11-25 15:52:32,975 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 16:53:04] 2025-11-25 15:52:32,976 | INFO     | ready for new job
[2025-11-25 16:53:04] 2025-11-25 15:52:32,976 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 16:53:04] 2025-11-25 15:52:32,979 | INFO     | ***************************************
[2025-11-25 16:53:04] 2025-11-25 15:52:32,979 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 16:53:04] 2025-11-25 15:52:32,979 | INFO     | ***************************************
[2025-11-25 16:53:04] 2025-11-25 15:52:32,979 | INFO     | 
[2025-11-25 16:53:04] 2025-11-25 15:52:32,980 | INFO     | architecture information:
[2025-11-25 16:53:04] 2025-11-25 15:52:32,980 | INFO     | executing command: cat /etc/os-release
[2025-11-25 16:53:04] 2025-11-25 15:52:32,996 | INFO     | cat /etc/os-release:
[2025-11-25 16:53:04] NAME="CentOS Linux"
[2025-11-25 16:53:04] VERSION="7 (Core)"
[2025-11-25 16:53:04] ID="centos"
[2025-11-25 16:53:04] ID_LIKE="rhel fedora"
[2025-11-25 16:53:04] VERSION_ID="7"
[2025-11-25 16:53:04] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 16:53:04] ANSI_COLOR="0;31"
[2025-11-25 16:53:04] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 16:53:04] HOME_URL="https://www.centos.org/"
[2025-11-25 16:53:04] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 16:53:04] 
[2025-11-25 16:53:04] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 16:53:04] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 16:53:04] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 16:53:04] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 16:53:04] 
[2025-11-25 16:53:04] 2025-11-25 15:52:32,997 | INFO     | ***************************************
[2025-11-25 16:53:04] 2025-11-25 15:52:33,499 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/11
[2025-11-25 16:53:04] 2025-11-25 15:52:33,515 | INFO     | sufficient remaining disk space (1764031987712 B)
[2025-11-25 16:53:04] 2025-11-25 15:52:33,515 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 16:53:04] 2025-11-25 15:52:33,515 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 16:53:04] 2025-11-25 15:52:33,515 | INFO     | update_server=False
[2025-11-25 16:53:04] 2025-11-25 15:52:33,515 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 16:53:04] 2025-11-25 15:52:33,516 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 16:53:04] 2025-11-25 15:52:33,516 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 16:53:04] 2025-11-25 15:52:33,770 | INFO     | all job control threads have been joined
[2025-11-25 16:53:04] 2025-11-25 15:52:33,957 | INFO     | all payload control threads have been joined
[2025-11-25 16:53:04] 2025-11-25 15:52:34,063 | INFO     | all data control threads have been joined
[2025-11-25 16:53:04] 2025-11-25 15:52:34,091 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 16:53:04] 2025-11-25 15:52:34,091 | INFO     | aborting loop
[2025-11-25 16:53:04] 2025-11-25 15:52:34,516 | INFO     | [job] retrieve thread has finished
[2025-11-25 16:53:04] 2025-11-25 15:52:34,521 | INFO     | [job] queue monitor thread has finished
[2025-11-25 16:53:04] 2025-11-25 15:52:34,775 | INFO     | [job] control thread has finished
[2025-11-25 16:53:04] 2025-11-25 15:52:34,857 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 16:53:04] 2025-11-25 15:52:34,962 | INFO     | [payload] control thread has finished
[2025-11-25 16:53:04] 2025-11-25 15:52:35,068 | INFO     | [data] control thread has finished
[2025-11-25 16:53:04] 2025-11-25 15:52:35,096 | INFO     | [job] job monitor thread has finished
[2025-11-25 16:53:04] 2025-11-25 15:52:35,128 | INFO     | [payload] failed_post thread has finished
[2025-11-25 16:53:04] 2025-11-25 15:52:35,399 | INFO     | [data] copytool_in thread has finished
[2025-11-25 16:53:04] 2025-11-25 15:52:35,441 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 16:53:04] 2025-11-25 15:52:35,521 | INFO     | [data] copytool_out thread has finished
[2025-11-25 16:53:04] 2025-11-25 15:52:35,578 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 16:53:04] 2025-11-25 15:52:35,702 | INFO     | [payload] validate_post thread has finished
[2025-11-25 16:53:04] 2025-11-25 15:52:35,704 | INFO     | [job] validate thread has finished
[2025-11-25 16:53:04] 2025-11-25 15:52:35,718 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 16:53:04] 2025-11-25 15:52:35,819 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 16:53:04] 2025-11-25 15:52:39,826 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 16:53:04] 2025-11-25 15:52:43,209 | INFO     | [monitor] cgroup control has ended
[2025-11-25 16:53:04] 2025-11-25 15:52:44,726 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 131130648819520)>', '<ExcThread(monitor, started 131130158204672)>']
[2025-11-25 16:53:04] 2025-11-25 15:52:49,751 | INFO     | all workflow threads have been joined
[2025-11-25 16:53:04] 2025-11-25 15:52:49,751 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 16:53:04] 2025-11-25 15:52:49,751 | INFO     | traces error code: 0
[2025-11-25 16:53:04] 2025-11-25 15:52:49,751 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 16:53:04] 2025-11-25 15:53:04,291 | INFO     | PID=3802278 has CPU usage=3.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 16:53:04] 2025-11-25 15:53:04,291 | INFO     | .. there are 2 such processes running
[2025-11-25 16:53:04] 2025-11-25 15:53:04,291 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 16:53:04] 2025-11-25 15:53:04,291 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 16:53:04] 2025-11-25 15:53:04,291 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 16:53:04] 2025-11-25 15:53:04,291 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 16:53:04] 2025-11-25 15:53:04,291 | INFO     | [monitor] control thread has ended
[2025-11-25 16:53:04] 2025-11-25 15:53:04,347 [wrapper] ==== pilot stdout END ====
[2025-11-25 16:53:04] 2025-11-25 15:53:04,349 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 16:53:04] 2025-11-25 15:53:04,350 [wrapper] pilotpid: 3802278
[2025-11-25 16:53:04] 2025-11-25 15:53:04,352 [wrapper] Pilot exit status: 0
[2025-11-25 16:53:04] 2025-11-25 15:53:04,360 [wrapper] pandaids: 6895377449
[2025-11-25 16:53:04] 2025-11-25 15:53:04,383 [wrapper] cleanup supervisor_pilot 4094821 3802279
[2025-11-25 16:53:04] 2025-11-25 15:53:04,385 [wrapper] Test setup, not cleaning
[2025-11-25 16:53:04] 2025-11-25 15:53:04,386 [wrapper] apfmon messages muted
[2025-11-25 16:53:04] 2025-11-25 15:53:04,387 [wrapper] ==== wrapper stdout END ====
[2025-11-25 16:53:04] 2025-11-25 15:53:04,389 [wrapper] ==== wrapper stderr END ====
[2025-11-25 16:53:04]  *** Error codes and diagnostics ***
[2025-11-25 16:53:04]     "exeErrorCode": 0,
[2025-11-25 16:53:04]     "exeErrorDiag": "",
[2025-11-25 16:53:04]     "pilotErrorCode": 0,
[2025-11-25 16:53:04]     "pilotErrorDiag": "",
[2025-11-25 16:53:04]  *** Listing of results directory ***
[2025-11-25 16:53:04] total 1319284
[2025-11-25 16:53:04] -rw-r--r-- 1 boinc boinc    576529 Nov 24 01:34 pilot3.tar.gz
[2025-11-25 16:53:04] -rwx------ 1 boinc boinc     36292 Nov 24 02:01 runpilot2-wrapper.sh
[2025-11-25 16:53:04] -rw-r--r-- 1 boinc boinc      5112 Nov 24 02:01 queuedata.json
[2025-11-25 16:53:04] -rw-r--r-- 1 boinc boinc       100 Nov 25 01:54 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 16:53:04] -rwxr-xr-x 1 boinc boinc      7986 Nov 25 01:54 run_atlas
[2025-11-25 16:53:04] -rw-r--r-- 1 boinc boinc       105 Nov 25 01:54 job.xml
[2025-11-25 16:53:04] -rw-r--r-- 1 boinc boinc      9570 Nov 25 01:54 init_data.xml
[2025-11-25 16:53:04] -rw-r--r-- 2 boinc boinc 410782186 Nov 25 01:54 EVNT.47483658._000971.pool.root.1
[2025-11-25 16:53:04] -rw-r--r-- 2 boinc boinc     15847 Nov 25 01:54 start_atlas.sh
[2025-11-25 16:53:04] drwxrwx--x 2 boinc boinc      4096 Nov 25 01:54 shared
[2025-11-25 16:53:04] -rw-r--r-- 2 boinc boinc    590101 Nov 25 01:54 input.tar.gz
[2025-11-25 16:53:04] -rw-r--r-- 1 boinc boinc         0 Nov 25 01:54 boinc_lockfile
[2025-11-25 16:53:04] -rw-r--r-- 1 boinc boinc      2785 Nov 25 01:54 pandaJob.out
[2025-11-25 16:53:04] -rw------- 1 boinc boinc    991801 Nov 25 01:54 agis_schedconf.cvmfs.json
[2025-11-25 16:53:04] drwx------ 5 boinc boinc      4096 Nov 25 01:54 pilot3
[2025-11-25 16:53:04] -rw-r--r-- 1 boinc boinc       533 Nov 25 16:48 boinc_task_state.xml
[2025-11-25 16:53:04] -rw------- 1 boinc boinc 918014959 Nov 25 16:51 HITS.47556137._009577.pool.root.1
[2025-11-25 16:53:04] -rw------- 1 boinc boinc      1031 Nov 25 16:52 memory_monitor_summary.json
[2025-11-25 16:53:04] -rw------- 1 boinc boinc   1516240 Nov 25 16:52 agis_ddmendpoints.agis.ALL.json
[2025-11-25 16:53:04] -rw------- 1 boinc boinc   1349030 Nov 25 16:52 log.47556137._009577.job.log.tgz.1
[2025-11-25 16:53:04] -rw------- 1 boinc boinc      8592 Nov 25 16:52 heartbeat.json
[2025-11-25 16:53:04] -rw------- 1 boinc boinc        95 Nov 25 16:52 pilot_heartbeat.json
[2025-11-25 16:53:04] -rw-r--r-- 1 boinc boinc      8192 Nov 25 16:52 boinc_mmap_file
[2025-11-25 16:53:04] -rw-r--r-- 1 boinc boinc        29 Nov 25 16:52 wrapper_checkpoint.txt
[2025-11-25 16:53:04] -rw------- 1 boinc boinc       822 Nov 25 16:53 pilotlog.txt
[2025-11-25 16:53:04] -rw------- 1 boinc boinc   7769544 Nov 25 16:53 log.47556137._009577.job.log.1
[2025-11-25 16:53:04] -rw------- 1 boinc boinc       353 Nov 25 16:53 output.list
[2025-11-25 16:53:04] -rw-r--r-- 1 boinc boinc       620 Nov 25 16:53 runtime_log
[2025-11-25 16:53:04] -rw------- 1 boinc boinc   9134080 Nov 25 16:53 result.tar.gz
[2025-11-25 16:53:04] -rw-r--r-- 1 boinc boinc      8986 Nov 25 16:53 runtime_log.err
[2025-11-25 16:53:04] -rw------- 1 boinc boinc       666 Nov 25 16:53 QkNMDmW8Zh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmEsIKDmmPi1bm.diag
[2025-11-25 16:53:04] -rw-r--r-- 1 boinc boinc     21375 Nov 25 16:53 stderr.txt
[2025-11-25 16:53:04] HITS file was successfully produced:
[2025-11-25 16:53:04] -rw------- 1 boinc boinc 918014959 Nov 25 16:51 shared/HITS.pool.root.1
[2025-11-25 16:53:04]  *** Contents of shared directory: ***
[2025-11-25 16:53:04] total 1307180
[2025-11-25 16:53:04] -rw-r--r-- 2 boinc boinc 410782186 Nov 25 01:54 ATLAS.root_0
[2025-11-25 16:53:04] -rw-r--r-- 2 boinc boinc     15847 Nov 25 01:54 start_atlas.sh
[2025-11-25 16:53:04] -rw-r--r-- 2 boinc boinc    590101 Nov 25 01:54 input.tar.gz
[2025-11-25 16:53:04] -rw------- 1 boinc boinc 918014959 Nov 25 16:51 HITS.pool.root.1
[2025-11-25 16:53:04] -rw------- 1 boinc boinc   9134080 Nov 25 16:53 result.tar.gz
16:53:05 (3798083): run_atlas exited; CPU time 107689.908153
16:53:05 (3798083): called boinc_finish(0)

</stderr_txt>
]]>

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