Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
23:33:06 (11409): wrapper (7.7.26015): starting
23:33:06 (11409): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 23:33:06] Arguments: --nthreads 8
[2025-11-26 23:33:06] Threads: 8
[2025-11-26 23:33:06] Checking for CVMFS
[2025-11-26 23:33:07] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 23:33:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 23:33:07] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 23:33:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 23:33:08] 2.11.2.0 6477 285828 140552 153337 2 84 22957256 25165824 1288 130560 20 130744350 99.870 79812847 2607 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-26 23:33:08] CVMFS is ok
[2025-11-26 23:33:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 23:33:08] Checking for apptainer binary...
[2025-11-26 23:33:08] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 23:33:08] Running /usr/bin/apptainer --version
[2025-11-26 23:33:08] apptainer version 1.3.2-1.el7
[2025-11-26 23:33:08] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 23:33:20] cg-vwn261.simple-grid.lan
[2025-11-26 23:33:20] apptainer works
[2025-11-26 23:33:20] Set ATHENA_PROC_NUMBER=8
[2025-11-26 23:33:20] Set ATHENA_CORE_NUMBER=8
[2025-11-26 23:33:20] Starting ATLAS job with PandaID=6895360790
[2025-11-26 23:33:20] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 23:12:51]  *** The last 200 lines of the pilot log: ***
[2025-11-27 23:12:51] 2025-11-27 22:11:50,268 | INFO     | time since job start (84878s) is within the limit (172800.0s)
[2025-11-27 23:12:51] 2025-11-27 22:11:52,025 | INFO     | monitor loop #5714: job 0:6895360790 is in state 'finished'
[2025-11-27 23:12:51] 2025-11-27 22:11:52,025 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 23:12:51] 2025-11-27 22:11:52,275 | INFO     | time since job start (84880s) is within the limit (172800.0s)
[2025-11-27 23:12:51] 2025-11-27 22:11:54,288 | INFO     | time since job start (84882s) is within the limit (172800.0s)
[2025-11-27 23:12:51] 2025-11-27 22:11:54,531 | INFO     | monitor loop #5715: job 0:6895360790 is in state 'finished'
[2025-11-27 23:12:51] 2025-11-27 22:11:54,531 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 23:12:51] 2025-11-27 22:11:56,298 | INFO     | time since job start (84884s) is within the limit (172800.0s)
[2025-11-27 23:12:51] 2025-11-27 22:11:57,036 | INFO     | monitor loop #5716: job 0:6895360790 is in state 'finished'
[2025-11-27 23:12:51] 2025-11-27 22:11:57,036 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 23:12:51] 2025-11-27 22:11:57,485 | INFO     | PID=15227 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-27 23:12:51] 2025-11-27 22:11:57,485 | INFO     | .. there are 9 such processes running
[2025-11-27 23:12:51] 2025-11-27 22:11:58,486 | INFO     | time since job start (84886s) is within the limit (172800.0s)
[2025-11-27 23:12:51] 2025-11-27 22:11:59,546 | INFO     | monitor loop #5717: job 0:6895360790 is in state 'finished'
[2025-11-27 23:12:51] 2025-11-27 22:11:59,546 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 23:12:51] 2025-11-27 22:12:00,497 | INFO     | time since job start (84888s) is within the limit (172800.0s)
[2025-11-27 23:12:51] 2025-11-27 22:12:00,902 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 23:12:51] 2025-11-27 22:12:00,903 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-27 23:12:51] 2025-11-27 22:12:00,905 | INFO     | using path: /var/lib/boinc/slots/6/PanDA_Pilot-6895360790/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 23:12:51] 2025-11-27 22:12:00,906 | INFO     | extracted standard info from prmon json
[2025-11-27 23:12:51] 2025-11-27 22:12:00,906 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 23:12:51] 2025-11-27 22:12:00,906 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 23:12:51] 2025-11-27 22:12:00,944 | INFO     | fitting pss+swap vs Time
[2025-11-27 23:12:51] 2025-11-27 22:12:00,946 | INFO     | sum of square deviations: 818467594536.0963
[2025-11-27 23:12:51] 2025-11-27 22:12:01,022 | INFO     | sum of deviations: 2790778086409.4736
[2025-11-27 23:12:51] 2025-11-27 22:12:01,023 | INFO     | mean x: 1764239268.5824893
[2025-11-27 23:12:51] 2025-11-27 22:12:01,023 | INFO     | mean y: 2834016.4081041967
[2025-11-27 23:12:51] 2025-11-27 22:12:01,023 | INFO     | intersect: -6012798517.869277
[2025-11-27 23:12:51] 2025-11-27 22:12:01,025 | INFO     | chi2: 23.68112890796776
[2025-11-27 23:12:51] 2025-11-27 22:12:01,027 | INFO     | sum of square deviations: 809616619732.7172
[2025-11-27 23:12:51] 2025-11-27 22:12:01,089 | INFO     | sum of deviations: 3244504439305.392
[2025-11-27 23:12:51] 2025-11-27 22:12:01,090 | INFO     | mean x: 1764239116.0864198
[2025-11-27 23:12:51] 2025-11-27 22:12:01,090 | INFO     | mean y: 2841833.0639070445
[2025-11-27 23:12:51] 2025-11-27 22:12:01,090 | INFO     | intersect: -7067271977.134716
[2025-11-27 23:12:51] 2025-11-27 22:12:01,092 | INFO     | chi2: 20.462858606562286
[2025-11-27 23:12:51] 2025-11-27 22:12:01,092 | INFO     | current chi2=20.462858606562286 (change=13.590020619002901 %)
[2025-11-27 23:12:51] 2025-11-27 22:12:01,092 | INFO     | right removable region: 1376
[2025-11-27 23:12:51] 2025-11-27 22:12:01,094 | INFO     | sum of square deviations: 809615707172.7166
[2025-11-27 23:12:51] 2025-11-27 22:12:01,146 | INFO     | sum of deviations: 2209427118025.0225
[2025-11-27 23:12:51] 2025-11-27 22:12:01,147 | INFO     | mean x: 1764239421.0864198
[2025-11-27 23:12:51] 2025-11-27 22:12:01,147 | INFO     | mean y: 2844031.621641249
[2025-11-27 23:12:51] 2025-11-27 22:12:01,147 | INFO     | intersect: -4811734521.02191
[2025-11-27 23:12:51] 2025-11-27 22:12:01,148 | INFO     | chi2: 18.96418343505017
[2025-11-27 23:12:51] 2025-11-27 22:12:01,149 | INFO     | current chi2=18.96418343505017 (change=19.91858365895101 %)
[2025-11-27 23:12:51] 2025-11-27 22:12:01,149 | INFO     | left removable region: 10
[2025-11-27 23:12:51] 2025-11-27 22:12:01,151 | INFO     | sum of square deviations: 790367770545.128
[2025-11-27 23:12:51] 2025-11-27 22:12:01,207 | INFO     | sum of deviations: 2270425272895.3984
[2025-11-27 23:12:51] 2025-11-27 22:12:01,208 | INFO     | mean x: 1764239390.5951684
[2025-11-27 23:12:51] 2025-11-27 22:12:01,208 | INFO     | mean y: 2862257.6969253295
[2025-11-27 23:12:51] 2025-11-27 22:12:01,208 | INFO     | intersect: -5065124885.911099
[2025-11-27 23:12:51] 2025-11-27 22:12:01,209 | INFO     | chi2: 11.676803359293054
[2025-11-27 23:12:51] 2025-11-27 22:12:01,210 | INFO     | current memory leak: 2.87 B/s (using 1366 data points, chi2=11.68)
[2025-11-27 23:12:51] 2025-11-27 22:12:01,211 | INFO     | could have reported an average CPU frequency of 1999 MHz (47 samples)
[2025-11-27 23:12:51] 2025-11-27 22:12:01,211 | INFO     | ..............................
[2025-11-27 23:12:51] 2025-11-27 22:12:01,211 | INFO     | . Timing measurements:
[2025-11-27 23:12:51] 2025-11-27 22:12:01,211 | INFO     | . get job = 0 s
[2025-11-27 23:12:51] 2025-11-27 22:12:01,211 | INFO     | . initial setup = 13 s
[2025-11-27 23:12:51] 2025-11-27 22:12:01,211 | INFO     | . payload setup = 160 s
[2025-11-27 23:12:51] 2025-11-27 22:12:01,211 | INFO     | . stage-in = 0 s
[2025-11-27 23:12:51] 2025-11-27 22:12:01,211 | INFO     | . payload execution = 84419 s
[2025-11-27 23:12:51] 2025-11-27 22:12:01,211 | INFO     | . stage-out = 5 s
[2025-11-27 23:12:51] 2025-11-27 22:12:01,212 | INFO     | . log creation = 1 s
[2025-11-27 23:12:51] 2025-11-27 22:12:01,212 | INFO     | ..............................
[2025-11-27 23:12:51] 2025-11-27 22:12:01,687 | INFO     | 
[2025-11-27 23:12:51] 2025-11-27 22:12:01,687 | INFO     | job summary report
[2025-11-27 23:12:51] 2025-11-27 22:12:01,687 | INFO     | --------------------------------------------------
[2025-11-27 23:12:51] 2025-11-27 22:12:01,688 | INFO     | PanDA job id: 6895360790
[2025-11-27 23:12:51] 2025-11-27 22:12:01,688 | INFO     | task id: 47556137
[2025-11-27 23:12:51] 2025-11-27 22:12:01,688 | INFO     | errors: (none)
[2025-11-27 23:12:51] 2025-11-27 22:12:01,688 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 23:12:51] 2025-11-27 22:12:01,688 | INFO     | pilot state: finished 
[2025-11-27 23:12:51] 2025-11-27 22:12:01,688 | INFO     | transexitcode: 0
[2025-11-27 23:12:51] 2025-11-27 22:12:01,688 | INFO     | exeerrorcode: 0
[2025-11-27 23:12:51] 2025-11-27 22:12:01,688 | INFO     | exeerrordiag: 
[2025-11-27 23:12:51] 2025-11-27 22:12:01,688 | INFO     | exitcode: 0
[2025-11-27 23:12:51] 2025-11-27 22:12:01,688 | INFO     | exitmsg: OK
[2025-11-27 23:12:51] 2025-11-27 22:12:01,688 | INFO     | cpuconsumptiontime: 318538 s
[2025-11-27 23:12:51] 2025-11-27 22:12:01,688 | INFO     | nevents: 1000
[2025-11-27 23:12:51] 2025-11-27 22:12:01,689 | INFO     | neventsw: 0
[2025-11-27 23:12:51] 2025-11-27 22:12:01,689 | INFO     | pid: 21774
[2025-11-27 23:12:51] 2025-11-27 22:12:01,689 | INFO     | pgrp: 21774
[2025-11-27 23:12:51] 2025-11-27 22:12:01,689 | INFO     | corecount: 8
[2025-11-27 23:12:51] 2025-11-27 22:12:01,689 | INFO     | event service: False
[2025-11-27 23:12:51] 2025-11-27 22:12:01,689 | INFO     | sizes: {0: 2283487, 1: 2284172, 2: 2284371, 13: 2284371, 24: 2284427, 34: 2284455, 45: 2284611, 56: 2284639, 66: 2284667, 77: 2284695, 88: 2284751, 99: 2285059, 10
[2025-11-27 23:12:51] 2025-11-27 22:12:01,689 | INFO     | --------------------------------------------------
[2025-11-27 23:12:51] 2025-11-27 22:12:01,689 | INFO     | 
[2025-11-27 23:12:51] 2025-11-27 22:12:01,689 | INFO     | executing command: ls -lF /var/lib/boinc/slots/6
[2025-11-27 23:12:51] 2025-11-27 22:12:02,066 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 23:12:51] 2025-11-27 22:12:02,067 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 23:12:51] 2025-11-27 22:12:02,067 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 23:12:51] 2025-11-27 22:12:02,067 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 23:12:51] 2025-11-27 22:12:02,067 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 23:12:51] 2025-11-27 22:12:02,067 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 23:12:51] 2025-11-27 22:12:02,067 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 23:12:51] 2025-11-27 22:12:02,067 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 23:12:51] 2025-11-27 22:12:02,067 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 23:12:51] 2025-11-27 22:12:02,067 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 23:12:51] 2025-11-27 22:12:02,067 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 23:12:51] 2025-11-27 22:12:02,068 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 23:12:51] 2025-11-27 22:12:02,068 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 23:12:51] 2025-11-27 22:12:02,068 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 23:12:51] 2025-11-27 22:12:02,068 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 23:12:51] 2025-11-27 22:12:02,068 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 23:12:51] 2025-11-27 22:12:02,068 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 23:12:51] 2025-11-27 22:12:02,068 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 23:12:51] 2025-11-27 22:12:02,068 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 23:12:51] 2025-11-27 22:12:02,068 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 23:12:51] 2025-11-27 22:12:02,068 | INFO     | job 6895360790 has completed (purged errors)
[2025-11-27 23:12:51] 2025-11-27 22:12:02,069 | INFO     | overall cleanup function is called
[2025-11-27 23:12:51] 2025-11-27 22:12:03,084 | INFO     | --- collectZombieJob: --- 10, [21774]
[2025-11-27 23:12:51] 2025-11-27 22:12:03,084 | INFO     | zombie collector waiting for pid 21774
[2025-11-27 23:12:51] 2025-11-27 22:12:03,084 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 23:12:51] 2025-11-27 22:12:03,085 | INFO     | collected zombie processes
[2025-11-27 23:12:51] 2025-11-27 22:12:03,085 | INFO     | will attempt to kill all subprocesses of pid=21774
[2025-11-27 23:12:51] 2025-11-27 22:12:03,186 | INFO     | process IDs to be killed: [21774] (in reverse order)
[2025-11-27 23:12:51] 2025-11-27 22:12:04,036 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 23:12:51] 2025-11-27 22:12:04,036 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 23:12:51] 2025-11-27 22:12:04,039 | INFO     | did not find any defunct processes belonging to 21774
[2025-11-27 23:12:51] 2025-11-27 22:12:04,042 | INFO     | did not find any defunct processes belonging to 21774
[2025-11-27 23:12:51] 2025-11-27 22:12:04,094 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 23:12:51] 2025-11-27 22:12:04,095 | INFO     | ready for new job
[2025-11-27 23:12:51] 2025-11-27 22:12:04,095 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 23:12:51] 2025-11-27 22:12:04,103 | INFO     | ***************************************
[2025-11-27 23:12:51] 2025-11-27 22:12:04,103 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 23:12:51] 2025-11-27 22:12:04,103 | INFO     | ***************************************
[2025-11-27 23:12:51] 2025-11-27 22:12:04,103 | INFO     | 
[2025-11-27 23:12:51] 2025-11-27 22:12:04,104 | INFO     | pilot is running in a VM
[2025-11-27 23:12:51] 2025-11-27 22:12:04,104 | INFO     | architecture information:
[2025-11-27 23:12:51] 2025-11-27 22:12:04,112 | INFO     | executing command: cat /etc/os-release
[2025-11-27 23:12:51] 2025-11-27 22:12:04,366 | INFO     | cat /etc/os-release:
[2025-11-27 23:12:51] NAME="CentOS Linux"
[2025-11-27 23:12:51] VERSION="7 (Core)"
[2025-11-27 23:12:51] ID="centos"
[2025-11-27 23:12:51] ID_LIKE="rhel fedora"
[2025-11-27 23:12:51] VERSION_ID="7"
[2025-11-27 23:12:51] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 23:12:51] ANSI_COLOR="0;31"
[2025-11-27 23:12:51] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 23:12:51] HOME_URL="https://www.centos.org/"
[2025-11-27 23:12:51] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 23:12:51] 
[2025-11-27 23:12:51] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 23:12:51] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 23:12:51] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 23:12:51] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 23:12:51] 
[2025-11-27 23:12:51] 2025-11-27 22:12:04,366 | INFO     | ***************************************
[2025-11-27 23:12:51] 2025-11-27 22:12:04,869 | INFO     | executing command: df -mP /var/lib/boinc/slots/6
[2025-11-27 23:12:51] 2025-11-27 22:12:05,041 | INFO     | sufficient remaining disk space (495406022656 B)
[2025-11-27 23:12:51] 2025-11-27 22:12:05,041 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 23:12:51] 2025-11-27 22:12:05,041 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 23:12:51] 2025-11-27 22:12:05,042 | INFO     | update_server=False
[2025-11-27 23:12:51] 2025-11-27 22:12:05,042 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 23:12:51] 2025-11-27 22:12:05,042 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 23:12:51] 2025-11-27 22:12:05,049 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 23:12:51] 2025-11-27 22:12:05,197 | INFO     | all payload control threads have been joined
[2025-11-27 23:12:51] 2025-11-27 22:12:05,324 | INFO     | all data control threads have been joined
[2025-11-27 23:12:51] 2025-11-27 22:12:05,562 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 23:12:51] 2025-11-27 22:12:05,562 | INFO     | aborting loop
[2025-11-27 23:12:51] 2025-11-27 22:12:05,872 | INFO     | all job control threads have been joined
[2025-11-27 23:12:51] 2025-11-27 22:12:06,047 | INFO     | [job] retrieve thread has finished
[2025-11-27 23:12:51] 2025-11-27 22:12:06,202 | INFO     | [payload] control thread has finished
[2025-11-27 23:12:51] 2025-11-27 22:12:06,330 | INFO     | [data] control thread has finished
[2025-11-27 23:12:51] 2025-11-27 22:12:06,334 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 23:12:51] 2025-11-27 22:12:06,555 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 23:12:51] 2025-11-27 22:12:06,568 | INFO     | [job] job monitor thread has finished
[2025-11-27 23:12:51] 2025-11-27 22:12:06,686 | INFO     | [job] validate thread has finished
[2025-11-27 23:12:51] 2025-11-27 22:12:06,878 | INFO     | [job] control thread has finished
[2025-11-27 23:12:51] 2025-11-27 22:12:06,958 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 23:12:51] 2025-11-27 22:12:07,018 | INFO     | [payload] validate_post thread has finished
[2025-11-27 23:12:51] 2025-11-27 22:12:07,049 | INFO     | [data] copytool_out thread has finished
[2025-11-27 23:12:51] 2025-11-27 22:12:07,122 | INFO     | [data] copytool_in thread has finished
[2025-11-27 23:12:51] 2025-11-27 22:12:07,257 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 23:12:51] 2025-11-27 22:12:07,285 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 23:12:51] 2025-11-27 22:12:07,339 | INFO     | [job] queue monitor thread has finished
[2025-11-27 23:12:51] 2025-11-27 22:12:07,489 | INFO     | [payload] failed_post thread has finished
[2025-11-27 23:12:51] 2025-11-27 22:12:09,058 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 23:12:51] 2025-11-27 22:12:33,660 | INFO     | PID=15227 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-27 23:12:51] 2025-11-27 22:12:33,660 | INFO     | .. there are 9 such processes running
[2025-11-27 23:12:51] 2025-11-27 22:12:33,660 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 23:12:51] 2025-11-27 22:12:33,660 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 23:12:51] 2025-11-27 22:12:33,660 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 23:12:51] 2025-11-27 22:12:40,077 | INFO     | [monitor] cgroup control has ended
[2025-11-27 23:12:51] 2025-11-27 22:12:40,755 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139665789441856)>', '<ExcThread(monitor, started 139665206138624)>']
[2025-11-27 23:12:51] 2025-11-27 22:12:41,708 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 23:12:51] 2025-11-27 22:12:41,709 | INFO     | [monitor] control thread has ended
[2025-11-27 23:12:51] 2025-11-27 22:12:45,781 | INFO     | all workflow threads have been joined
[2025-11-27 23:12:51] 2025-11-27 22:12:45,781 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 23:12:51] 2025-11-27 22:12:45,782 | INFO     | traces error code: 0
[2025-11-27 23:12:51] 2025-11-27 22:12:45,782 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 23:12:51] 2025-11-27 22:12:46,205 [wrapper] ==== pilot stdout END ====
[2025-11-27 23:12:51] 2025-11-27 22:12:46,304 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 23:12:51] 2025-11-27 22:12:46,407 [wrapper] pilotpid: 15227
[2025-11-27 23:12:51] 2025-11-27 22:12:46,523 [wrapper] Pilot exit status: 0
[2025-11-27 23:12:51] 2025-11-27 22:12:46,915 [wrapper] pandaids: 6895360790
[2025-11-27 23:12:51] 2025-11-27 22:12:48,070 [wrapper] cleanup supervisor_pilot 27476 15228
[2025-11-27 23:12:51] 2025-11-27 22:12:48,170 [wrapper] Test setup, not cleaning
[2025-11-27 23:12:51] 2025-11-27 22:12:48,281 [wrapper] apfmon messages muted
[2025-11-27 23:12:51] 2025-11-27 22:12:48,382 [wrapper] ==== wrapper stdout END ====
[2025-11-27 23:12:51] 2025-11-27 22:12:48,473 [wrapper] ==== wrapper stderr END ====
[2025-11-27 23:12:51]  *** Error codes and diagnostics ***
[2025-11-27 23:12:51]     "exeErrorCode": 0,
[2025-11-27 23:12:51]     "exeErrorDiag": "",
[2025-11-27 23:12:51]     "pilotErrorCode": 0,
[2025-11-27 23:12:51]     "pilotErrorDiag": "",
[2025-11-27 23:12:51]  *** Listing of results directory ***
[2025-11-27 23:12:51] total 1338116
[2025-11-27 23:12:51] -rw-r--r--. 1 boinc boinc    576529 Nov 23 14:42 pilot3.tar.gz
[2025-11-27 23:12:51] -rwx------. 1 boinc boinc     36292 Nov 23 14:49 runpilot2-wrapper.sh
[2025-11-27 23:12:51] -rw-r--r--. 1 boinc boinc      5112 Nov 23 14:49 queuedata.json
[2025-11-27 23:12:51] -rw-r--r--. 1 boinc boinc       100 Nov 26 23:33 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 23:12:51] -rwxr-xr-x. 1 boinc boinc      7986 Nov 26 23:33 run_atlas
[2025-11-27 23:12:51] -rw-r--r--. 1 boinc boinc       105 Nov 26 23:33 job.xml
[2025-11-27 23:12:51] -rw-r--r--. 1 boinc boinc      6391 Nov 26 23:33 init_data.xml
[2025-11-27 23:12:51] -rw-r--r--. 2 boinc boinc 412457679 Nov 26 23:33 EVNT.47483658._000752.pool.root.1
[2025-11-27 23:12:51] -rw-r--r--. 2 boinc boinc     15847 Nov 26 23:33 start_atlas.sh
[2025-11-27 23:12:51] drwxrwx--x. 2 boinc boinc        68 Nov 26 23:33 shared
[2025-11-27 23:12:51] -rw-r--r--. 2 boinc boinc    590099 Nov 26 23:33 input.tar.gz
[2025-11-27 23:12:51] -rw-r--r--. 1 boinc boinc         0 Nov 26 23:33 boinc_lockfile
[2025-11-27 23:12:51] -rw-r--r--. 1 boinc boinc      2786 Nov 26 23:33 pandaJob.out
[2025-11-27 23:12:51] -rw-------. 1 boinc boinc    991546 Nov 26 23:37 agis_schedconf.cvmfs.json
[2025-11-27 23:12:51] drwx------. 5 boinc boinc      4096 Nov 26 23:37 pilot3
[2025-11-27 23:12:51] -rw-r--r--. 1 boinc boinc       533 Nov 27 22:45 boinc_task_state.xml
[2025-11-27 23:12:51] -rw-------. 1 boinc boinc 926358439 Nov 27 23:09 HITS.47556137._007480.pool.root.1
[2025-11-27 23:12:51] -rw-------. 1 boinc boinc      1029 Nov 27 23:10 memory_monitor_summary.json
[2025-11-27 23:12:51] -rw-------. 1 boinc boinc   1516240 Nov 27 23:10 agis_ddmendpoints.agis.ALL.json
[2025-11-27 23:12:51] -rw-------. 1 boinc boinc   2465882 Nov 27 23:10 log.47556137._007480.job.log.tgz.1
[2025-11-27 23:12:51] -rw-------. 1 boinc boinc        95 Nov 27 23:11 pilot_heartbeat.json
[2025-11-27 23:12:51] -rw-------. 1 boinc boinc      8630 Nov 27 23:12 heartbeat.json
[2025-11-27 23:12:51] -rw-------. 1 boinc boinc      4884 Nov 27 23:12 pilotlog.txt
[2025-11-27 23:12:51] -rw-r--r--. 1 boinc boinc      8192 Nov 27 23:12 boinc_mmap_file
[2025-11-27 23:12:51] -rw-r--r--. 1 boinc boinc        29 Nov 27 23:12 wrapper_checkpoint.txt
[2025-11-27 23:12:51] -rw-------. 1 boinc boinc  11287781 Nov 27 23:12 log.47556137._007480.job.log.1
[2025-11-27 23:12:51] -rw-------. 1 boinc boinc       353 Nov 27 23:12 output.list
[2025-11-27 23:12:51] -rw-r--r--. 1 boinc boinc       620 Nov 27 23:12 runtime_log
[2025-11-27 23:12:51] -rw-------. 1 boinc boinc  13772800 Nov 27 23:12 result.tar.gz
[2025-11-27 23:12:51] -rw-------. 1 boinc boinc       662 Nov 27 23:12 SlpNDmWePh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmuYIKDmz1R0ym.diag
[2025-11-27 23:12:51] -rw-r--r--. 1 boinc boinc      8817 Nov 27 23:12 runtime_log.err
[2025-11-27 23:12:51] -rw-r--r--. 1 boinc boinc     21504 Nov 27 23:12 stderr.txt
[2025-11-27 23:12:51] HITS file was successfully produced:
[2025-11-27 23:12:51] -rw-------. 1 boinc boinc 926358439 Nov 27 23:09 shared/HITS.pool.root.1
[2025-11-27 23:12:51]  *** Contents of shared directory: ***
[2025-11-27 23:12:51] total 1321488
[2025-11-27 23:12:51] -rw-r--r--. 2 boinc boinc 412457679 Nov 26 23:33 ATLAS.root_0
[2025-11-27 23:12:51] -rw-r--r--. 2 boinc boinc     15847 Nov 26 23:33 start_atlas.sh
[2025-11-27 23:12:51] -rw-r--r--. 2 boinc boinc    590099 Nov 26 23:33 input.tar.gz
[2025-11-27 23:12:51] -rw-------. 1 boinc boinc 926358439 Nov 27 23:09 HITS.pool.root.1
[2025-11-27 23:12:51] -rw-------. 1 boinc boinc  13772800 Nov 27 23:12 result.tar.gz
23:12:53 (11409): run_atlas exited; CPU time 319124.920194
23:12:53 (11409): called boinc_finish(0)

</stderr_txt>
]]>

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