Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
14:17:44 (30213): wrapper (7.7.26015): starting
14:17:44 (30213): wrapper: running run_atlas (--nthreads 8)
[2025-11-24 14:17:44] Arguments: --nthreads 8
[2025-11-24 14:17:44] Threads: 8
[2025-11-24 14:17:44] Checking for CVMFS
[2025-11-24 14:17:44] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 14:17:45] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 14:17:45] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 14:17:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 14:17:45] 2.11.2.0 24877 115213 142044 153257 1 72 16769933 18432000 1885 130560 0 83250199 99.974 4779556 31880 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-24 14:17:45] CVMFS is ok
[2025-11-24 14:17:45] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 14:17:45] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 14:17:45] Further information can be found at the LHC@home message board.
[2025-11-24 14:17:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 14:17:45] Checking for apptainer binary...
[2025-11-24 14:17:45] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 14:17:45] Running /usr/bin/apptainer --version
[2025-11-24 14:17:45] apptainer version 1.3.2-1.el7
[2025-11-24 14:17:45] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 14:17:46] c-206-3.aglt2.org
[2025-11-24 14:17:46] apptainer works
[2025-11-24 14:17:46] Set ATHENA_PROC_NUMBER=8
[2025-11-24 14:17:46] Set ATHENA_CORE_NUMBER=8
[2025-11-24 14:17:46] Starting ATLAS job with PandaID=6895372519
[2025-11-24 14:17:46] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 09:28:17]  *** The last 200 lines of the pilot log: ***
[2025-11-25 09:28:17] 2025-11-25 14:27:44,780 | INFO     | monitor loop #4938: job 0:6895372519 is in state 'finished'
[2025-11-25 09:28:17] 2025-11-25 14:27:44,780 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 09:28:17] 2025-11-25 14:27:45,261 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-25 09:28:17] 2025-11-25 14:27:45,265 | INFO     | found 12 cores (6 cores per socket, 2 sockets) HT, CPU MHz: 2461.2916666666665
[2025-11-25 09:28:17] 2025-11-25 14:27:45,267 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6895372519/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 09:28:17] 2025-11-25 14:27:45,268 | INFO     | extracted standard info from prmon json
[2025-11-25 09:28:17] 2025-11-25 14:27:45,268 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 09:28:17] 2025-11-25 14:27:45,268 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 09:28:17] 2025-11-25 14:27:45,283 | INFO     | fitting pss+swap vs Time
[2025-11-25 09:28:17] 2025-11-25 14:27:45,284 | INFO     | sum of square deviations: 448608210712.75415
[2025-11-25 09:28:17] 2025-11-25 14:27:45,308 | INFO     | sum of deviations: 1793267252682.6904
[2025-11-25 09:28:17] 2025-11-25 14:27:45,308 | INFO     | mean x: 1764046368.6189213
[2025-11-25 09:28:17] 2025-11-25 14:27:45,308 | INFO     | mean y: 2868629.1732979664
[2025-11-25 09:28:17] 2025-11-25 14:27:45,308 | INFO     | intersect: -7048733435.871546
[2025-11-25 09:28:17] 2025-11-25 14:27:45,309 | INFO     | chi2: 6.447717307670221
[2025-11-25 09:28:17] 2025-11-25 14:27:45,310 | INFO     | sum of square deviations: 442684992218.3313
[2025-11-25 09:28:17] 2025-11-25 14:27:45,333 | INFO     | sum of deviations: 2150914118747.7166
[2025-11-25 09:28:17] 2025-11-25 14:27:45,334 | INFO     | mean x: 1764046216.1216695
[2025-11-25 09:28:17] 2025-11-25 14:27:45,334 | INFO     | mean y: 2877833.191829485
[2025-11-25 09:28:17] 2025-11-25 14:27:45,334 | INFO     | intersect: -8568255092.200497
[2025-11-25 09:28:17] 2025-11-25 14:27:45,335 | INFO     | chi2: 3.526395461842285
[2025-11-25 09:28:17] 2025-11-25 14:27:45,335 | INFO     | current chi2=3.526395461842285 (change=45.30784627224156 %)
[2025-11-25 09:28:17] 2025-11-25 14:27:45,336 | INFO     | sum of square deviations: 436814146798.8902
[2025-11-25 09:28:17] 2025-11-25 14:27:45,359 | INFO     | sum of deviations: 2315411731533.9697
[2025-11-25 09:28:17] 2025-11-25 14:27:45,359 | INFO     | mean x: 1764046063.6244426
[2025-11-25 09:28:17] 2025-11-25 14:27:45,359 | INFO     | mean y: 2882104.950044603
[2025-11-25 09:28:17] 2025-11-25 14:27:45,359 | INFO     | intersect: -9347760452.336132
[2025-11-25 09:28:17] 2025-11-25 14:27:45,360 | INFO     | chi2: 2.8314376692647745
[2025-11-25 09:28:17] 2025-11-25 14:27:45,360 | INFO     | current chi2=2.8314376692647745 (change=19.707313036707617 %)
[2025-11-25 09:28:17] 2025-11-25 14:27:45,360 | INFO     | right removable region: 1120
[2025-11-25 09:28:17] 2025-11-25 14:27:45,361 | INFO     | sum of square deviations: 442684565218.33167
[2025-11-25 09:28:17] 2025-11-25 14:27:45,384 | INFO     | sum of deviations: 1475587585928.1755
[2025-11-25 09:28:17] 2025-11-25 14:27:45,384 | INFO     | mean x: 1764046521.1216695
[2025-11-25 09:28:17] 2025-11-25 14:27:45,385 | INFO     | mean y: 2876800.246891652
[2025-11-25 09:28:17] 2025-11-25 14:27:45,385 | INFO     | intersect: -5877168161.978345
[2025-11-25 09:28:17] 2025-11-25 14:27:45,386 | INFO     | chi2: 4.093688904831585
[2025-11-25 09:28:17] 2025-11-25 14:27:45,386 | INFO     | current chi2=4.093688904831585 (change=36.50948530324488 %)
[2025-11-25 09:28:17] 2025-11-25 14:27:45,387 | INFO     | sum of square deviations: 436813498735.6292
[2025-11-25 09:28:17] 2025-11-25 14:27:45,410 | INFO     | sum of deviations: 1402049421476.0793
[2025-11-25 09:28:17] 2025-11-25 14:27:45,410 | INFO     | mean x: 1764046673.6217663
[2025-11-25 09:28:17] 2025-11-25 14:27:45,410 | INFO     | mean y: 2878710.0214094557
[2025-11-25 09:28:17] 2025-11-25 14:27:45,411 | INFO     | intersect: -5659218787.8059025
[2025-11-25 09:28:17] 2025-11-25 14:27:45,412 | INFO     | chi2: 4.035296906758064
[2025-11-25 09:28:17] 2025-11-25 14:27:45,412 | INFO     | current chi2=4.035296906758064 (change=1.426390706059851 %)
[2025-11-25 09:28:17] 2025-11-25 14:27:45,412 | INFO     | left removable region: 20
[2025-11-25 09:28:17] 2025-11-25 14:27:45,413 | INFO     | sum of square deviations: 412722029774.4098
[2025-11-25 09:28:17] 2025-11-25 14:27:45,435 | INFO     | sum of deviations: 1854932361111.0376
[2025-11-25 09:28:17] 2025-11-25 14:27:45,435 | INFO     | mean x: 1764046643.13
[2025-11-25 09:28:17] 2025-11-25 14:27:45,435 | INFO     | mean y: 2895657.9927272727
[2025-11-25 09:28:17] 2025-11-25 14:27:45,436 | INFO     | intersect: -7925411940.803682
[2025-11-25 09:28:17] 2025-11-25 14:27:45,436 | INFO     | chi2: 0.281378970764812
[2025-11-25 09:28:17] 2025-11-25 14:27:45,437 | INFO     | current memory leak: 4.49 B/s (using 1100 data points, chi2=0.28)
[2025-11-25 09:28:17] 2025-11-25 14:27:45,437 | INFO     | could have reported an average CPU frequency of 2630 MHz (41 samples)
[2025-11-25 09:28:17] 2025-11-25 14:27:45,438 | INFO     | ..............................
[2025-11-25 09:28:17] 2025-11-25 14:27:45,438 | INFO     | . Timing measurements:
[2025-11-25 09:28:17] 2025-11-25 14:27:45,438 | INFO     | . get job = 0 s
[2025-11-25 09:28:17] 2025-11-25 14:27:45,438 | INFO     | . initial setup = 2 s
[2025-11-25 09:28:17] 2025-11-25 14:27:45,438 | INFO     | . payload setup = 5 s
[2025-11-25 09:28:17] 2025-11-25 14:27:45,438 | INFO     | . stage-in = 0 s
[2025-11-25 09:28:17] 2025-11-25 14:27:45,438 | INFO     | . payload execution = 68951 s
[2025-11-25 09:28:17] 2025-11-25 14:27:45,438 | INFO     | . stage-out = 4 s
[2025-11-25 09:28:17] 2025-11-25 14:27:45,438 | INFO     | . log creation = 0 s
[2025-11-25 09:28:17] 2025-11-25 14:27:45,438 | INFO     | ..............................
[2025-11-25 09:28:17] 2025-11-25 14:27:45,588 | INFO     | 
[2025-11-25 09:28:17] 2025-11-25 14:27:45,588 | INFO     | job summary report
[2025-11-25 09:28:17] 2025-11-25 14:27:45,588 | INFO     | --------------------------------------------------
[2025-11-25 09:28:17] 2025-11-25 14:27:45,588 | INFO     | PanDA job id: 6895372519
[2025-11-25 09:28:17] 2025-11-25 14:27:45,588 | INFO     | task id: 47556137
[2025-11-25 09:28:17] 2025-11-25 14:27:45,589 | INFO     | errors: (none)
[2025-11-25 09:28:17] 2025-11-25 14:27:45,589 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 09:28:17] 2025-11-25 14:27:45,589 | INFO     | pilot state: finished 
[2025-11-25 09:28:17] 2025-11-25 14:27:45,589 | INFO     | transexitcode: 0
[2025-11-25 09:28:17] 2025-11-25 14:27:45,589 | INFO     | exeerrorcode: 0
[2025-11-25 09:28:17] 2025-11-25 14:27:45,589 | INFO     | exeerrordiag: 
[2025-11-25 09:28:17] 2025-11-25 14:27:45,590 | INFO     | exitcode: 0
[2025-11-25 09:28:17] 2025-11-25 14:27:45,590 | INFO     | exitmsg: OK
[2025-11-25 09:28:17] 2025-11-25 14:27:45,590 | INFO     | cpuconsumptiontime: 534693 s
[2025-11-25 09:28:17] 2025-11-25 14:27:45,590 | INFO     | nevents: 1000
[2025-11-25 09:28:17] 2025-11-25 14:27:45,590 | INFO     | neventsw: 0
[2025-11-25 09:28:17] 2025-11-25 14:27:45,591 | INFO     | pid: 8146
[2025-11-25 09:28:17] 2025-11-25 14:27:45,591 | INFO     | pgrp: 8146
[2025-11-25 09:28:17] 2025-11-25 14:27:45,591 | INFO     | corecount: 8
[2025-11-25 09:28:17] 2025-11-25 14:27:45,591 | INFO     | event service: False
[2025-11-25 09:28:17] 2025-11-25 14:27:45,591 | INFO     | sizes: {0: 2284138, 1: 2284337, 4: 2284599, 11: 2284627, 68960: 2340771, 68965: 2349770, 68967: 2349954, 68973: 2350296}
[2025-11-25 09:28:17] 2025-11-25 14:27:45,591 | INFO     | --------------------------------------------------
[2025-11-25 09:28:17] 2025-11-25 14:27:45,592 | INFO     | 
[2025-11-25 09:28:17] 2025-11-25 14:27:45,592 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-11-25 09:28:17] 2025-11-25 14:27:45,609 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 09:28:17] 2025-11-25 14:27:45,610 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 09:28:17] 2025-11-25 14:27:45,610 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 09:28:17] 2025-11-25 14:27:45,610 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 09:28:17] 2025-11-25 14:27:45,610 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 09:28:17] 2025-11-25 14:27:45,611 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 09:28:17] 2025-11-25 14:27:45,611 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 09:28:17] 2025-11-25 14:27:45,611 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 09:28:17] 2025-11-25 14:27:45,611 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 09:28:17] 2025-11-25 14:27:45,611 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 09:28:17] 2025-11-25 14:27:45,611 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 09:28:17] 2025-11-25 14:27:45,612 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 09:28:17] 2025-11-25 14:27:45,612 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 09:28:17] 2025-11-25 14:27:45,612 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 09:28:17] 2025-11-25 14:27:45,612 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 09:28:17] 2025-11-25 14:27:45,612 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 09:28:17] 2025-11-25 14:27:45,613 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 09:28:17] 2025-11-25 14:27:45,613 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 09:28:17] 2025-11-25 14:27:45,613 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 09:28:17] 2025-11-25 14:27:45,613 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 09:28:17] 2025-11-25 14:27:45,613 | INFO     | job 6895372519 has completed (purged errors)
[2025-11-25 09:28:17] 2025-11-25 14:27:45,614 | INFO     | overall cleanup function is called
[2025-11-25 09:28:17] 2025-11-25 14:27:46,630 | INFO     | --- collectZombieJob: --- 10, [8146]
[2025-11-25 09:28:17] 2025-11-25 14:27:46,630 | INFO     | zombie collector waiting for pid 8146
[2025-11-25 09:28:17] 2025-11-25 14:27:46,630 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 09:28:17] 2025-11-25 14:27:46,630 | INFO     | collected zombie processes
[2025-11-25 09:28:17] 2025-11-25 14:27:46,631 | INFO     | will attempt to kill all subprocesses of pid=8146
[2025-11-25 09:28:17] 2025-11-25 14:27:46,786 | INFO     | process IDs to be killed: [8146] (in reverse order)
[2025-11-25 09:28:17] 2025-11-25 14:27:46,833 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 09:28:17] 2025-11-25 14:27:46,834 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 09:28:17] 2025-11-25 14:27:46,839 | INFO     | did not find any defunct processes belonging to 8146
[2025-11-25 09:28:17] 2025-11-25 14:27:46,844 | INFO     | did not find any defunct processes belonging to 8146
[2025-11-25 09:28:17] 2025-11-25 14:27:46,846 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 09:28:17] 2025-11-25 14:27:46,846 | INFO     | ready for new job
[2025-11-25 09:28:17] 2025-11-25 14:27:46,846 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 09:28:17] 2025-11-25 14:27:46,851 | INFO     | ***************************************
[2025-11-25 09:28:17] 2025-11-25 14:27:46,852 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 09:28:17] 2025-11-25 14:27:46,852 | INFO     | ***************************************
[2025-11-25 09:28:17] 2025-11-25 14:27:46,852 | INFO     | 
[2025-11-25 09:28:17] 2025-11-25 14:27:46,853 | INFO     | architecture information:
[2025-11-25 09:28:17] 2025-11-25 14:27:46,854 | INFO     | executing command: cat /etc/os-release
[2025-11-25 09:28:17] 2025-11-25 14:27:46,870 | INFO     | cat /etc/os-release:
[2025-11-25 09:28:17] NAME="CentOS Linux"
[2025-11-25 09:28:17] VERSION="7 (Core)"
[2025-11-25 09:28:17] ID="centos"
[2025-11-25 09:28:17] ID_LIKE="rhel fedora"
[2025-11-25 09:28:17] VERSION_ID="7"
[2025-11-25 09:28:17] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 09:28:17] ANSI_COLOR="0;31"
[2025-11-25 09:28:17] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 09:28:17] HOME_URL="https://www.centos.org/"
[2025-11-25 09:28:17] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 09:28:17] 
[2025-11-25 09:28:17] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 09:28:17] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 09:28:17] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 09:28:17] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 09:28:17] 
[2025-11-25 09:28:17] 2025-11-25 14:27:46,870 | INFO     | ***************************************
[2025-11-25 09:28:17] 2025-11-25 14:27:47,373 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-11-25 09:28:17] 2025-11-25 14:27:47,388 | INFO     | sufficient remaining disk space (24836571136 B)
[2025-11-25 09:28:17] 2025-11-25 14:27:47,389 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 09:28:17] 2025-11-25 14:27:47,389 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 09:28:17] 2025-11-25 14:27:47,389 | INFO     | update_server=False
[2025-11-25 09:28:17] 2025-11-25 14:27:47,390 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 09:28:17] 2025-11-25 14:27:47,390 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 09:28:17] 2025-11-25 14:27:47,404 | INFO     | all data control threads have been joined
[2025-11-25 09:28:17] 2025-11-25 14:27:48,088 | INFO     | all payload control threads have been joined
[2025-11-25 09:28:17] 2025-11-25 14:27:48,144 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 09:28:17] 2025-11-25 14:27:48,288 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 09:28:17] 2025-11-25 14:27:48,288 | INFO     | aborting loop
[2025-11-25 09:28:17] 2025-11-25 14:27:48,394 | INFO     | [job] retrieve thread has finished
[2025-11-25 09:28:17] 2025-11-25 14:27:48,395 | INFO     | [job] queue monitor thread has finished
[2025-11-25 09:28:17] 2025-11-25 14:27:48,408 | INFO     | [data] control thread has finished
[2025-11-25 09:28:17] 2025-11-25 14:27:48,622 | INFO     | [job] validate thread has finished
[2025-11-25 09:28:17] 2025-11-25 14:27:48,720 | INFO     | [payload] validate_post thread has finished
[2025-11-25 09:28:17] 2025-11-25 14:27:48,893 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 09:28:17] 2025-11-25 14:27:48,894 | INFO     | all job control threads have been joined
[2025-11-25 09:28:17] 2025-11-25 14:27:49,074 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 09:28:17] 2025-11-25 14:27:49,092 | INFO     | [data] copytool_in thread has finished
[2025-11-25 09:28:17] 2025-11-25 14:27:49,094 | INFO     | [payload] control thread has finished
[2025-11-25 09:28:17] 2025-11-25 14:27:49,254 | INFO     | [payload] failed_post thread has finished
[2025-11-25 09:28:17] 2025-11-25 14:27:49,293 | INFO     | [job] job monitor thread has finished
[2025-11-25 09:28:17] 2025-11-25 14:27:49,534 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 09:28:17] 2025-11-25 14:27:49,750 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 09:28:17] 2025-11-25 14:27:49,900 | INFO     | [job] control thread has finished
[2025-11-25 09:28:17] 2025-11-25 14:27:50,149 | INFO     | [data] copytool_out thread has finished
[2025-11-25 09:28:17] 2025-11-25 14:27:50,852 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 09:28:17] 2025-11-25 14:27:51,458 | INFO     | [monitor] cgroup control has ended
[2025-11-25 09:28:17] 2025-11-25 14:27:54,859 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 09:28:17] 2025-11-25 14:27:55,797 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140686089029440)>', '<ExcThread(monitor, started 140685646739200)>']
[2025-11-25 09:28:17] 2025-11-25 14:28:00,823 | INFO     | all workflow threads have been joined
[2025-11-25 09:28:17] 2025-11-25 14:28:00,823 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 09:28:17] 2025-11-25 14:28:00,823 | INFO     | traces error code: 0
[2025-11-25 09:28:17] 2025-11-25 14:28:00,824 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 09:28:17] 2025-11-25 14:28:17,111 | INFO     | PID=1466 has CPU usage=8.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-25 09:28:17] 2025-11-25 14:28:17,125 | INFO     | .. there are 3 such processes running
[2025-11-25 09:28:17] 2025-11-25 14:28:17,125 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 09:28:17] 2025-11-25 14:28:17,125 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 09:28:17] 2025-11-25 14:28:17,125 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 09:28:17] 2025-11-25 14:28:17,126 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 09:28:17] 2025-11-25 14:28:17,126 | CRITICAL | thread 'MainThread' is not alive
[2025-11-25 09:28:17] 2025-11-25 14:28:17,126 | INFO     | [monitor] control thread has ended
[2025-11-25 09:28:17] 2025-11-25 14:28:17,222 [wrapper] ==== pilot stdout END ====
[2025-11-25 09:28:17] 2025-11-25 14:28:17,224 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 09:28:17] 2025-11-25 14:28:17,226 [wrapper] pilotpid: 1466
[2025-11-25 09:28:17] 2025-11-25 14:28:17,228 [wrapper] Pilot exit status: 0
[2025-11-25 09:28:17] 2025-11-25 14:28:17,235 [wrapper] pandaids: 6895372519
[2025-11-25 09:28:17] 2025-11-25 14:28:17,264 [wrapper] cleanup supervisor_pilot 12969 1467
[2025-11-25 09:28:17] 2025-11-25 14:28:17,266 [wrapper] Test setup, not cleaning
[2025-11-25 09:28:17] 2025-11-25 14:28:17,269 [wrapper] apfmon messages muted
[2025-11-25 09:28:17] 2025-11-25 14:28:17,271 [wrapper] ==== wrapper stdout END ====
[2025-11-25 09:28:17] 2025-11-25 14:28:17,273 [wrapper] ==== wrapper stderr END ====
[2025-11-25 09:28:17]  *** Error codes and diagnostics ***
[2025-11-25 09:28:17]     "exeErrorCode": 0,
[2025-11-25 09:28:17]     "exeErrorDiag": "",
[2025-11-25 09:28:17]     "pilotErrorCode": 0,
[2025-11-25 09:28:17]     "pilotErrorDiag": "",
[2025-11-25 09:28:17]  *** Listing of results directory ***
[2025-11-25 09:28:17] total 1321052
[2025-11-25 09:28:17] -rw-r--r-- 1 boincer umatlas    576529 Nov 23 16:23 pilot3.tar.gz
[2025-11-25 09:28:17] -rwx------ 1 boincer umatlas     36292 Nov 23 16:47 runpilot2-wrapper.sh
[2025-11-25 09:28:17] -rw-r--r-- 1 boincer umatlas      5112 Nov 23 16:47 queuedata.json
[2025-11-25 09:28:17] -rw-r--r-- 1 boincer umatlas       100 Nov 24 14:17 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 09:28:17] -rwxr-xr-x 1 boincer umatlas      7986 Nov 24 14:17 run_atlas
[2025-11-25 09:28:17] -rw-r--r-- 1 boincer umatlas       105 Nov 24 14:17 job.xml
[2025-11-25 09:28:17] -rw-r--r-- 2 boincer umatlas 406761177 Nov 24 14:17 EVNT.47483658._000904.pool.root.1
[2025-11-25 09:28:17] -rw-r--r-- 2 boincer umatlas     15847 Nov 24 14:17 start_atlas.sh
[2025-11-25 09:28:17] drwxrwx--x 2 boincer umatlas      4096 Nov 24 14:17 shared
[2025-11-25 09:28:17] -rw-r--r-- 2 boincer umatlas    590104 Nov 24 14:17 input.tar.gz
[2025-11-25 09:28:17] -rw-r--r-- 1 boincer umatlas         0 Nov 24 14:17 boinc_lockfile
[2025-11-25 09:28:17] -rw-r--r-- 1 boincer umatlas      2785 Nov 24 14:17 pandaJob.out
[2025-11-25 09:28:17] -rw------- 1 boincer umatlas        57 Nov 24 14:17 setup.sh.local
[2025-11-25 09:28:17] -rw------- 1 boincer umatlas    991801 Nov 24 14:17 agis_schedconf.cvmfs.json
[2025-11-25 09:28:17] drwx------ 5 boincer umatlas      4096 Nov 24 14:17 pilot3
[2025-11-25 09:28:17] -rw-r--r-- 1 boincer umatlas       533 Nov 25 09:12 boinc_task_state.xml
[2025-11-25 09:28:17] -rw-r--r-- 1 boincer umatlas      5953 Nov 25 09:20 init_data.xml
[2025-11-25 09:28:17] -rw------- 1 boincer umatlas 918404959 Nov 25 09:26 HITS.47556137._008907.pool.root.1
[2025-11-25 09:28:17] -rw------- 1 boincer umatlas        95 Nov 25 09:27 pilot_heartbeat.json
[2025-11-25 09:28:17] -rw------- 1 boincer umatlas      1065 Nov 25 09:27 memory_monitor_summary.json
[2025-11-25 09:28:17] -rw------- 1 boincer umatlas   1516240 Nov 25 09:27 agis_ddmendpoints.agis.ALL.json
[2025-11-25 09:28:17] -rw------- 1 boincer umatlas   2299578 Nov 25 09:27 log.47556137._008907.job.log.tgz.1
[2025-11-25 09:28:17] -rw------- 1 boincer umatlas      8672 Nov 25 09:27 heartbeat.json
[2025-11-25 09:28:17] -rw-r--r-- 1 boincer umatlas      8192 Nov 25 09:27 boinc_mmap_file
[2025-11-25 09:28:17] -rw-r--r-- 1 boincer umatlas        29 Nov 25 09:27 wrapper_checkpoint.txt
[2025-11-25 09:28:17] -rw------- 1 boincer umatlas       889 Nov 25 09:28 pilotlog.txt
[2025-11-25 09:28:17] -rw------- 1 boincer umatlas   9543061 Nov 25 09:28 log.47556137._008907.job.log.1
[2025-11-25 09:28:17] -rw------- 1 boincer umatlas       353 Nov 25 09:28 output.list
[2025-11-25 09:28:17] -rw-r--r-- 1 boincer umatlas       620 Nov 25 09:28 runtime_log
[2025-11-25 09:28:17] -rw------- 1 boincer umatlas  11857920 Nov 25 09:28 result.tar.gz
[2025-11-25 09:28:17] -rw------- 1 boincer umatlas       667 Nov 25 09:28 WjZKDmT6Wh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmdCLKDmRPYjYn.diag
[2025-11-25 09:28:17] -rw-r--r-- 1 boincer umatlas      9338 Nov 25 09:28 runtime_log.err
[2025-11-25 09:28:17] -rw-r--r-- 1 boincer umatlas     21265 Nov 25 09:28 stderr.txt
[2025-11-25 09:28:17] HITS file was successfully produced:
[2025-11-25 09:28:17] -rw------- 1 boincer umatlas 918404959 Nov 25 09:26 shared/HITS.pool.root.1
[2025-11-25 09:28:17]  *** Contents of shared directory: ***
[2025-11-25 09:28:17] total 1306288
[2025-11-25 09:28:17] -rw-r--r-- 2 boincer umatlas 406761177 Nov 24 14:17 ATLAS.root_0
[2025-11-25 09:28:17] -rw-r--r-- 2 boincer umatlas     15847 Nov 24 14:17 start_atlas.sh
[2025-11-25 09:28:17] -rw-r--r-- 2 boincer umatlas    590104 Nov 24 14:17 input.tar.gz
[2025-11-25 09:28:17] -rw------- 1 boincer umatlas 918404959 Nov 25 09:26 HITS.pool.root.1
[2025-11-25 09:28:17] -rw------- 1 boincer umatlas  11857920 Nov 25 09:28 result.tar.gz
09:28:19 (30213): run_atlas exited; CPU time 533835.973970
09:28:19 (30213): called boinc_finish(0)

</stderr_txt>
]]>

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