Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
00:14:01 (7841): wrapper (7.7.26015): starting
00:14:01 (7841): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 00:14:01] Arguments: --nthreads 8
[2025-11-27 00:14:01] Threads: 8
[2025-11-27 00:14:01] Checking for CVMFS
[2025-11-27 00:14:02] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 00:14:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 00:14:03] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 00:14:04] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 00:14:04] 2.11.2.0 27084 285842 140484 153340 3 14 17277893 25165824 1288 130560 11 137427434 99.880 77229803 2877 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-27 00:14:04] CVMFS is ok
[2025-11-27 00:14:04] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 00:14:04] Checking for apptainer binary...
[2025-11-27 00:14:04] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 00:14:04] Running /usr/bin/apptainer --version
[2025-11-27 00:14:04] apptainer version 1.3.2-1.el7
[2025-11-27 00:14:04] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 00:14:10] cg-vwn405.simple-grid.lan
[2025-11-27 00:14:10] apptainer works
[2025-11-27 00:14:10] Set ATHENA_PROC_NUMBER=8
[2025-11-27 00:14:10] Set ATHENA_CORE_NUMBER=8
[2025-11-27 00:14:10] Starting ATLAS job with PandaID=6895367342
[2025-11-27 00:14:10] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 00:08:12]  *** The last 200 lines of the pilot log: ***
[2025-11-28 00:08:12] 2025-11-27 23:07:24,038 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 00:08:12] 2025-11-27 23:07:25,030 | INFO     | time since job start (85752s) is within the limit (172800.0s)
[2025-11-28 00:08:12] 2025-11-27 23:07:26,541 | INFO     | monitor loop #5778: job 0:6895367342 is in state 'finished'
[2025-11-28 00:08:12] 2025-11-27 23:07:26,542 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 00:08:12] 2025-11-27 23:07:27,036 | INFO     | time since job start (85754s) is within the limit (172800.0s)
[2025-11-28 00:08:12] 2025-11-27 23:07:29,046 | INFO     | time since job start (85756s) is within the limit (172800.0s)
[2025-11-28 00:08:12] 2025-11-27 23:07:29,050 | INFO     | monitor loop #5779: job 0:6895367342 is in state 'finished'
[2025-11-28 00:08:12] 2025-11-27 23:07:29,050 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 00:08:12] 2025-11-27 23:07:31,052 | INFO     | time since job start (85758s) is within the limit (172800.0s)
[2025-11-28 00:08:12] 2025-11-27 23:07:31,052 | INFO     | 85766s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-28 00:08:12] 2025-11-27 23:07:31,553 | INFO     | monitor loop #5780: job 0:6895367342 is in state 'finished'
[2025-11-28 00:08:12] 2025-11-27 23:07:31,554 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 00:08:12] 2025-11-27 23:07:33,058 | INFO     | time since job start (85760s) is within the limit (172800.0s)
[2025-11-28 00:08:12] 2025-11-27 23:07:34,057 | INFO     | monitor loop #5781: job 0:6895367342 is in state 'finished'
[2025-11-28 00:08:12] 2025-11-27 23:07:34,058 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 00:08:12] 2025-11-27 23:07:34,285 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-28 00:08:12] 2025-11-27 23:07:34,286 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-28 00:08:12] 2025-11-27 23:07:34,288 | INFO     | using path: /var/lib/boinc/slots/4/PanDA_Pilot-6895367342/memory_monitor_summary.json (trf name=prmon)
[2025-11-28 00:08:12] 2025-11-27 23:07:34,288 | INFO     | extracted standard info from prmon json
[2025-11-28 00:08:12] 2025-11-27 23:07:34,289 | INFO     | extracted standard memory fields from prmon json
[2025-11-28 00:08:12] 2025-11-27 23:07:34,289 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-28 00:08:12] 2025-11-27 23:07:34,320 | INFO     | fitting pss+swap vs Time
[2025-11-28 00:08:12] 2025-11-27 23:07:34,323 | INFO     | sum of square deviations: 843596904935.0682
[2025-11-28 00:08:12] 2025-11-27 23:07:34,411 | INFO     | sum of deviations: 4288124074170.272
[2025-11-28 00:08:12] 2025-11-27 23:07:34,412 | INFO     | mean x: 1764242158.5651863
[2025-11-28 00:08:12] 2025-11-27 23:07:34,412 | INFO     | mean y: 2848775.2607449857
[2025-11-28 00:08:12] 2025-11-27 23:07:34,412 | INFO     | intersect: -8965047181.389078
[2025-11-28 00:08:12] 2025-11-27 23:07:34,414 | INFO     | chi2: 23.056491082780372
[2025-11-28 00:08:12] 2025-11-27 23:07:34,416 | INFO     | sum of square deviations: 834565356559.3743
[2025-11-28 00:08:12] 2025-11-27 23:07:34,491 | INFO     | sum of deviations: 4750795155969.063
[2025-11-28 00:08:12] 2025-11-27 23:07:34,491 | INFO     | mean x: 1764242006.069015
[2025-11-28 00:08:12] 2025-11-27 23:07:34,491 | INFO     | mean y: 2856586.5930984905
[2025-11-28 00:08:12] 2025-11-27 23:07:34,491 | INFO     | intersect: -10040158391.81923
[2025-11-28 00:08:12] 2025-11-27 23:07:34,493 | INFO     | chi2: 19.946718606319084
[2025-11-28 00:08:12] 2025-11-27 23:07:34,493 | INFO     | current chi2=19.946718606319084 (change=13.48762248902569 %)
[2025-11-28 00:08:12] 2025-11-27 23:07:34,493 | INFO     | right removable region: 1390
[2025-11-28 00:08:12] 2025-11-27 23:07:34,495 | INFO     | sum of square deviations: 834564449489.3743
[2025-11-28 00:08:12] 2025-11-27 23:07:34,566 | INFO     | sum of deviations: 3683691481031.1733
[2025-11-28 00:08:12] 2025-11-27 23:07:34,570 | INFO     | mean x: 1764242311.069015
[2025-11-28 00:08:12] 2025-11-27 23:07:34,571 | INFO     | mean y: 2858980.4773544213
[2025-11-28 00:08:12] 2025-11-27 23:07:34,571 | INFO     | intersect: -7784345921.116558
[2025-11-28 00:08:12] 2025-11-27 23:07:34,573 | INFO     | chi2: 17.9141903741549
[2025-11-28 00:08:12] 2025-11-27 23:07:34,573 | INFO     | current chi2=17.9141903741549 (change=22.303049888046388 %)
[2025-11-28 00:08:12] 2025-11-27 23:07:34,573 | INFO     | left removable region: 10
[2025-11-28 00:08:12] 2025-11-27 23:07:34,575 | INFO     | sum of square deviations: 814921548628.7031
[2025-11-28 00:08:12] 2025-11-27 23:07:34,639 | INFO     | sum of deviations: 3716850216304.729
[2025-11-28 00:08:12] 2025-11-27 23:07:34,640 | INFO     | mean x: 1764242280.5775363
[2025-11-28 00:08:12] 2025-11-27 23:07:34,640 | INFO     | mean y: 2877746.913768116
[2025-11-28 00:08:12] 2025-11-27 23:07:34,640 | INFO     | intersect: -8043816211.802836
[2025-11-28 00:08:12] 2025-11-27 23:07:34,642 | INFO     | chi2: 10.130433382268395
[2025-11-28 00:08:12] 2025-11-27 23:07:34,642 | INFO     | current memory leak: 4.56 B/s (using 1380 data points, chi2=10.13)
[2025-11-28 00:08:12] 2025-11-27 23:07:34,643 | INFO     | could have reported an average CPU frequency of 1999 MHz (47 samples)
[2025-11-28 00:08:12] 2025-11-27 23:07:34,643 | INFO     | ..............................
[2025-11-28 00:08:12] 2025-11-27 23:07:34,644 | INFO     | . Timing measurements:
[2025-11-28 00:08:12] 2025-11-27 23:07:34,644 | INFO     | . get job = 0 s
[2025-11-28 00:08:12] 2025-11-27 23:07:34,644 | INFO     | . initial setup = 8 s
[2025-11-28 00:08:12] 2025-11-27 23:07:34,644 | INFO     | . payload setup = 147 s
[2025-11-28 00:08:12] 2025-11-27 23:07:34,644 | INFO     | . stage-in = 0 s
[2025-11-28 00:08:12] 2025-11-27 23:07:34,644 | INFO     | . payload execution = 85285 s
[2025-11-28 00:08:12] 2025-11-27 23:07:34,644 | INFO     | . stage-out = 5 s
[2025-11-28 00:08:12] 2025-11-27 23:07:34,644 | INFO     | . log creation = 2 s
[2025-11-28 00:08:12] 2025-11-27 23:07:34,644 | INFO     | ..............................
[2025-11-28 00:08:12] 2025-11-27 23:07:34,775 | INFO     | 
[2025-11-28 00:08:12] 2025-11-27 23:07:34,776 | INFO     | job summary report
[2025-11-28 00:08:12] 2025-11-27 23:07:34,776 | INFO     | --------------------------------------------------
[2025-11-28 00:08:12] 2025-11-27 23:07:34,776 | INFO     | PanDA job id: 6895367342
[2025-11-28 00:08:12] 2025-11-27 23:07:34,776 | INFO     | task id: 47556149
[2025-11-28 00:08:12] 2025-11-27 23:07:34,776 | INFO     | errors: (none)
[2025-11-28 00:08:12] 2025-11-27 23:07:34,776 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-28 00:08:12] 2025-11-27 23:07:34,776 | INFO     | pilot state: finished 
[2025-11-28 00:08:12] 2025-11-27 23:07:34,777 | INFO     | transexitcode: 0
[2025-11-28 00:08:12] 2025-11-27 23:07:34,777 | INFO     | exeerrorcode: 0
[2025-11-28 00:08:12] 2025-11-27 23:07:34,777 | INFO     | exeerrordiag: 
[2025-11-28 00:08:12] 2025-11-27 23:07:34,777 | INFO     | exitcode: 0
[2025-11-28 00:08:12] 2025-11-27 23:07:34,777 | INFO     | exitmsg: OK
[2025-11-28 00:08:12] 2025-11-27 23:07:34,777 | INFO     | cpuconsumptiontime: 321978 s
[2025-11-28 00:08:12] 2025-11-27 23:07:34,777 | INFO     | nevents: 1000
[2025-11-28 00:08:12] 2025-11-27 23:07:34,777 | INFO     | neventsw: 0
[2025-11-28 00:08:12] 2025-11-27 23:07:34,777 | INFO     | pid: 18189
[2025-11-28 00:08:12] 2025-11-27 23:07:34,777 | INFO     | pgrp: 18189
[2025-11-28 00:08:12] 2025-11-27 23:07:34,778 | INFO     | corecount: 8
[2025-11-28 00:08:12] 2025-11-27 23:07:34,778 | INFO     | event service: False
[2025-11-28 00:08:12] 2025-11-27 23:07:34,778 | INFO     | sizes: {0: 2284144, 1: 2284343, 12: 2284343, 23: 2284371, 33: 2284399, 44: 2284455, 55: 2284611, 66: 2284639, 76: 2284667, 87: 2284723, 98: 2284751, 107: 2285321, 
[2025-11-28 00:08:12] 2025-11-27 23:07:34,778 | INFO     | --------------------------------------------------
[2025-11-28 00:08:12] 2025-11-27 23:07:34,778 | INFO     | 
[2025-11-28 00:08:12] 2025-11-27 23:07:34,778 | INFO     | executing command: ls -lF /var/lib/boinc/slots/4
[2025-11-28 00:08:12] 2025-11-27 23:07:35,070 | INFO     | time since job start (85762s) is within the limit (172800.0s)
[2025-11-28 00:08:12] 2025-11-27 23:07:35,259 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-28 00:08:12] 2025-11-27 23:07:35,259 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-28 00:08:12] 2025-11-27 23:07:35,259 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-28 00:08:12] 2025-11-27 23:07:35,259 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-28 00:08:12] 2025-11-27 23:07:35,259 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-28 00:08:12] 2025-11-27 23:07:35,260 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-28 00:08:12] 2025-11-27 23:07:35,260 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-28 00:08:12] 2025-11-27 23:07:35,260 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-28 00:08:12] 2025-11-27 23:07:35,260 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-28 00:08:12] 2025-11-27 23:07:35,260 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-28 00:08:12] 2025-11-27 23:07:35,260 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-28 00:08:12] 2025-11-27 23:07:35,260 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-28 00:08:12] 2025-11-27 23:07:35,260 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-28 00:08:12] 2025-11-27 23:07:35,260 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-28 00:08:12] 2025-11-27 23:07:35,261 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-28 00:08:12] 2025-11-27 23:07:35,261 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-28 00:08:12] 2025-11-27 23:07:35,261 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-28 00:08:12] 2025-11-27 23:07:35,261 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-28 00:08:12] 2025-11-27 23:07:35,261 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-28 00:08:12] 2025-11-27 23:07:35,261 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-28 00:08:12] 2025-11-27 23:07:35,261 | INFO     | job 6895367342 has completed (purged errors)
[2025-11-28 00:08:12] 2025-11-27 23:07:35,262 | INFO     | overall cleanup function is called
[2025-11-28 00:08:12] 2025-11-27 23:07:36,277 | INFO     | --- collectZombieJob: --- 10, [18189]
[2025-11-28 00:08:12] 2025-11-27 23:07:36,278 | INFO     | zombie collector waiting for pid 18189
[2025-11-28 00:08:12] 2025-11-27 23:07:36,278 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-28 00:08:12] 2025-11-27 23:07:36,278 | INFO     | collected zombie processes
[2025-11-28 00:08:12] 2025-11-27 23:07:36,278 | INFO     | will attempt to kill all subprocesses of pid=18189
[2025-11-28 00:08:12] 2025-11-27 23:07:36,394 | INFO     | process IDs to be killed: [18189] (in reverse order)
[2025-11-28 00:08:12] 2025-11-27 23:07:36,998 | WARNING  | found no corresponding commands to process id(s)
[2025-11-28 00:08:12] 2025-11-27 23:07:36,998 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-28 00:08:12] 2025-11-27 23:07:37,001 | INFO     | did not find any defunct processes belonging to 18189
[2025-11-28 00:08:12] 2025-11-27 23:07:37,003 | INFO     | did not find any defunct processes belonging to 18189
[2025-11-28 00:08:12] 2025-11-27 23:07:37,028 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 00:08:12] 2025-11-27 23:07:37,029 | INFO     | ready for new job
[2025-11-28 00:08:12] 2025-11-27 23:07:37,029 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 00:08:12] 2025-11-27 23:07:37,034 | INFO     | ***************************************
[2025-11-28 00:08:12] 2025-11-27 23:07:37,034 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 00:08:12] 2025-11-27 23:07:37,034 | INFO     | ***************************************
[2025-11-28 00:08:12] 2025-11-27 23:07:37,034 | INFO     | 
[2025-11-28 00:08:12] 2025-11-27 23:07:37,035 | INFO     | pilot is running in a VM
[2025-11-28 00:08:12] 2025-11-27 23:07:37,035 | INFO     | architecture information:
[2025-11-28 00:08:12] 2025-11-27 23:07:37,050 | INFO     | executing command: cat /etc/os-release
[2025-11-28 00:08:12] 2025-11-27 23:07:37,385 | INFO     | cat /etc/os-release:
[2025-11-28 00:08:12] NAME="CentOS Linux"
[2025-11-28 00:08:12] VERSION="7 (Core)"
[2025-11-28 00:08:12] ID="centos"
[2025-11-28 00:08:12] ID_LIKE="rhel fedora"
[2025-11-28 00:08:12] VERSION_ID="7"
[2025-11-28 00:08:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 00:08:12] ANSI_COLOR="0;31"
[2025-11-28 00:08:12] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 00:08:12] HOME_URL="https://www.centos.org/"
[2025-11-28 00:08:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 00:08:12] 
[2025-11-28 00:08:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 00:08:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 00:08:12] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 00:08:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 00:08:12] 
[2025-11-28 00:08:12] 2025-11-27 23:07:37,385 | INFO     | ***************************************
[2025-11-28 00:08:12] 2025-11-27 23:07:37,889 | INFO     | executing command: df -mP /var/lib/boinc/slots/4
[2025-11-28 00:08:12] 2025-11-27 23:07:38,150 | INFO     | sufficient remaining disk space (495166947328 B)
[2025-11-28 00:08:12] 2025-11-27 23:07:38,151 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 00:08:12] 2025-11-27 23:07:38,151 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 00:08:12] 2025-11-27 23:07:38,151 | INFO     | update_server=False
[2025-11-28 00:08:12] 2025-11-27 23:07:38,151 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 00:08:12] 2025-11-27 23:07:38,151 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 00:08:12] 2025-11-27 23:07:38,152 | INFO     | aborting loop
[2025-11-28 00:08:12] 2025-11-27 23:07:38,385 | INFO     | all data control threads have been joined
[2025-11-28 00:08:12] 2025-11-27 23:07:38,446 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 00:08:12] 2025-11-27 23:07:38,967 | INFO     | all job control threads have been joined
[2025-11-28 00:08:12] 2025-11-27 23:07:39,156 | INFO     | [job] retrieve thread has finished
[2025-11-28 00:08:12] 2025-11-27 23:07:39,158 | INFO     | [job] job monitor thread has finished
[2025-11-28 00:08:12] 2025-11-27 23:07:39,223 | INFO     | [payload] validate_post thread has finished
[2025-11-28 00:08:12] 2025-11-27 23:07:39,256 | INFO     | all payload control threads have been joined
[2025-11-28 00:08:12] 2025-11-27 23:07:39,391 | INFO     | [data] control thread has finished
[2025-11-28 00:08:12] 2025-11-27 23:07:39,527 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 00:08:12] 2025-11-27 23:07:39,530 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 00:08:12] 2025-11-27 23:07:39,613 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 00:08:12] 2025-11-27 23:07:39,789 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 00:08:12] 2025-11-27 23:07:39,875 | INFO     | [data] copytool_in thread has finished
[2025-11-28 00:08:12] 2025-11-27 23:07:39,880 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 00:08:12] 2025-11-27 23:07:39,909 | INFO     | [job] validate thread has finished
[2025-11-28 00:08:12] 2025-11-27 23:07:39,973 | INFO     | [job] control thread has finished
[2025-11-28 00:08:12] 2025-11-27 23:07:40,262 | INFO     | [payload] control thread has finished
[2025-11-28 00:08:12] 2025-11-27 23:07:40,331 | INFO     | [payload] failed_post thread has finished
[2025-11-28 00:08:12] 2025-11-27 23:07:40,453 | INFO     | [data] copytool_out thread has finished
[2025-11-28 00:08:12] 2025-11-27 23:07:40,485 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 00:08:12] 2025-11-27 23:07:40,795 | INFO     | [job] queue monitor thread has finished
[2025-11-28 00:08:12] 2025-11-27 23:07:42,765 | INFO     | [monitor] cgroup control has ended
[2025-11-28 00:08:12] 2025-11-27 23:07:43,622 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 00:08:12] 2025-11-27 23:07:44,419 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140287276042048)>', '<ExcThread(monitor, started 140286810367744)>']
[2025-11-28 00:08:12] 2025-11-27 23:07:49,445 | INFO     | all workflow threads have been joined
[2025-11-28 00:08:12] 2025-11-27 23:07:49,446 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 00:08:12] 2025-11-27 23:07:49,446 | INFO     | traces error code: 0
[2025-11-28 00:08:12] 2025-11-27 23:07:49,446 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 00:08:12] 2025-11-27 23:08:08,253 | INFO     | PID=11606 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-28 00:08:12] 2025-11-27 23:08:08,253 | INFO     | .. there are 9 such processes running
[2025-11-28 00:08:12] 2025-11-27 23:08:08,254 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 00:08:12] 2025-11-27 23:08:08,255 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 00:08:12] 2025-11-27 23:08:08,255 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 00:08:12] 2025-11-27 23:08:08,255 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 00:08:12] 2025-11-27 23:08:08,255 | INFO     | [monitor] control thread has ended
[2025-11-28 00:08:12] 2025-11-27 23:08:08,433 [wrapper] ==== pilot stdout END ====
[2025-11-28 00:08:12] 2025-11-27 23:08:08,510 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 00:08:12] 2025-11-27 23:08:08,593 [wrapper] pilotpid: 11606
[2025-11-28 00:08:12] 2025-11-27 23:08:08,693 [wrapper] Pilot exit status: 0
[2025-11-28 00:08:12] 2025-11-27 23:08:09,115 [wrapper] pandaids: 6895367342
[2025-11-28 00:08:12] 2025-11-27 23:08:09,928 [wrapper] cleanup supervisor_pilot 24334 11607
[2025-11-28 00:08:12] 2025-11-27 23:08:10,016 [wrapper] Test setup, not cleaning
[2025-11-28 00:08:12] 2025-11-27 23:08:10,063 [wrapper] apfmon messages muted
[2025-11-28 00:08:12] 2025-11-27 23:08:10,126 [wrapper] ==== wrapper stdout END ====
[2025-11-28 00:08:12] 2025-11-27 23:08:10,221 [wrapper] ==== wrapper stderr END ====
[2025-11-28 00:08:12]  *** Error codes and diagnostics ***
[2025-11-28 00:08:12]     "exeErrorCode": 0,
[2025-11-28 00:08:12]     "exeErrorDiag": "",
[2025-11-28 00:08:12]     "pilotErrorCode": 0,
[2025-11-28 00:08:12]     "pilotErrorDiag": "",
[2025-11-28 00:08:12]  *** Listing of results directory ***
[2025-11-28 00:08:12] total 1338956
[2025-11-28 00:08:12] -rw-r--r--. 1 boinc boinc    576529 Nov 23 19:33 pilot3.tar.gz
[2025-11-28 00:08:12] -rwx------. 1 boinc boinc     36292 Nov 23 20:13 runpilot2-wrapper.sh
[2025-11-28 00:08:12] -rw-r--r--. 1 boinc boinc      5112 Nov 23 20:13 queuedata.json
[2025-11-28 00:08:12] -rw-r--r--. 1 boinc boinc       100 Nov 27 00:14 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 00:08:12] -rwxr-xr-x. 1 boinc boinc      7986 Nov 27 00:14 run_atlas
[2025-11-28 00:08:12] -rw-r--r--. 1 boinc boinc       105 Nov 27 00:14 job.xml
[2025-11-28 00:08:12] -rw-r--r--. 2 boinc boinc 411441483 Nov 27 00:14 EVNT.47483658._001186.pool.root.1
[2025-11-28 00:08:12] -rw-r--r--. 2 boinc boinc    590104 Nov 27 00:14 input.tar.gz
[2025-11-28 00:08:12] -rw-r--r--. 1 boinc boinc      6392 Nov 27 00:14 init_data.xml
[2025-11-28 00:08:12] -rw-r--r--. 2 boinc boinc     15847 Nov 27 00:14 start_atlas.sh
[2025-11-28 00:08:12] drwxrwx--x. 2 boinc boinc        68 Nov 27 00:14 shared
[2025-11-28 00:08:12] -rw-r--r--. 1 boinc boinc         0 Nov 27 00:14 boinc_lockfile
[2025-11-28 00:08:12] -rw-r--r--. 1 boinc boinc      2786 Nov 27 00:14 pandaJob.out
[2025-11-28 00:08:12] -rw-------. 1 boinc boinc    991538 Nov 27 00:18 agis_schedconf.cvmfs.json
[2025-11-28 00:08:12] drwx------. 5 boinc boinc      4096 Nov 27 00:18 pilot3
[2025-11-28 00:08:12] -rw-r--r--. 1 boinc boinc       533 Nov 27 23:49 boinc_task_state.xml
[2025-11-28 00:08:12] -rw-------. 1 boinc boinc 927898099 Nov 28 00:04 HITS.47556149._001730.pool.root.1
[2025-11-28 00:08:12] -rw-------. 1 boinc boinc      1028 Nov 28 00:05 memory_monitor_summary.json
[2025-11-28 00:08:12] -rw-------. 1 boinc boinc   1516240 Nov 28 00:05 agis_ddmendpoints.agis.ALL.json
[2025-11-28 00:08:12] -rw-------. 1 boinc boinc   2479058 Nov 28 00:05 log.47556149._001730.job.log.tgz.1
[2025-11-28 00:08:12] -rw-------. 1 boinc boinc      8625 Nov 28 00:07 heartbeat.json
[2025-11-28 00:08:12] -rw-r--r--. 1 boinc boinc      8192 Nov 28 00:07 boinc_mmap_file
[2025-11-28 00:08:12] -rw-r--r--. 1 boinc boinc        29 Nov 28 00:07 wrapper_checkpoint.txt
[2025-11-28 00:08:12] -rw-------. 1 boinc boinc        95 Nov 28 00:08 pilot_heartbeat.json
[2025-11-28 00:08:12] -rw-------. 1 boinc boinc       820 Nov 28 00:08 pilotlog.txt
[2025-11-28 00:08:12] -rw-------. 1 boinc boinc  11447471 Nov 28 00:08 log.47556149._001730.job.log.1
[2025-11-28 00:08:12] -rw-------. 1 boinc boinc       353 Nov 28 00:08 output.list
[2025-11-28 00:08:12] -rw-r--r--. 1 boinc boinc       620 Nov 28 00:08 runtime_log
[2025-11-28 00:08:12] -rw-------. 1 boinc boinc  13946880 Nov 28 00:08 result.tar.gz
[2025-11-28 00:08:12] -rw-r--r--. 1 boinc boinc      8817 Nov 28 00:08 runtime_log.err
[2025-11-28 00:08:12] -rw-------. 1 boinc boinc       662 Nov 28 00:08 HyOKDmkhUh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmV8KKDmLvF0rn.diag
[2025-11-28 00:08:12] -rw-r--r--. 1 boinc boinc     21456 Nov 28 00:08 stderr.txt
[2025-11-28 00:08:12] HITS file was successfully produced:
[2025-11-28 00:08:12] -rw-------. 1 boinc boinc 927898099 Nov 28 00:04 shared/HITS.pool.root.1
[2025-11-28 00:08:12]  *** Contents of shared directory: ***
[2025-11-28 00:08:12] total 1322168
[2025-11-28 00:08:12] -rw-r--r--. 2 boinc boinc 411441483 Nov 27 00:14 ATLAS.root_0
[2025-11-28 00:08:12] -rw-r--r--. 2 boinc boinc    590104 Nov 27 00:14 input.tar.gz
[2025-11-28 00:08:12] -rw-r--r--. 2 boinc boinc     15847 Nov 27 00:14 start_atlas.sh
[2025-11-28 00:08:12] -rw-------. 1 boinc boinc 927898099 Nov 28 00:04 HITS.pool.root.1
[2025-11-28 00:08:12] -rw-------. 1 boinc boinc  13946880 Nov 28 00:08 result.tar.gz
00:08:14 (7841): run_atlas exited; CPU time 322558.250255
00:08:14 (7841): called boinc_finish(0)

</stderr_txt>
]]>

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