Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
10:17:10 (31817): wrapper (7.7.26015): starting
10:17:10 (31817): wrapper: running run_atlas (--nthreads 8)
[2025-11-24 10:17:10] Arguments: --nthreads 8
[2025-11-24 10:17:10] Threads: 8
[2025-11-24 10:17:10] Checking for CVMFS
[2025-11-24 10:17:10] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 10:17:10] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 10:17:10] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 10:17:10] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 10:17:10] 2.11.2.0 2783 79259 82088 153250 2 58 14758516 20275200 1 130560 0 25921099 99.895 4345804 29960 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-24 10:17:10] CVMFS is ok
[2025-11-24 10:17:10] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 10:17:10] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 10:17:10] Further information can be found at the LHC@home message board.
[2025-11-24 10:17:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 10:17:10] Checking for apptainer binary...
[2025-11-24 10:17:10] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 10:17:10] Running /usr/bin/apptainer --version
[2025-11-24 10:17:10] apptainer version 1.3.2-1.el7
[2025-11-24 10:17:10] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 10:17:12] c-204-38.aglt2.org
[2025-11-24 10:17:12] apptainer works
[2025-11-24 10:17:12] Set ATHENA_PROC_NUMBER=8
[2025-11-24 10:17:12] Set ATHENA_CORE_NUMBER=8
[2025-11-24 10:17:12] Starting ATLAS job with PandaID=6895355679
[2025-11-24 10:17:12] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 22:54:51]  *** The last 200 lines of the pilot log: ***
[2025-11-24 22:54:51] 2025-11-25 03:54:27,667 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 22:54:51] 2025-11-25 03:54:27,845 | INFO     | time since job start (45418s) is within the limit (172800.0s)
[2025-11-24 22:54:51] 2025-11-25 03:54:29,817 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-24 22:54:51] 2025-11-25 03:54:29,822 | INFO     | found 8 cores (4 cores per socket, 2 sockets) , CPU MHz: 1679.25
[2025-11-24 22:54:51] 2025-11-25 03:54:29,825 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6895355679/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 22:54:51] 2025-11-25 03:54:29,826 | INFO     | extracted standard info from prmon json
[2025-11-24 22:54:51] 2025-11-25 03:54:29,826 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 22:54:51] 2025-11-25 03:54:29,826 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 22:54:51] 2025-11-25 03:54:29,840 | INFO     | fitting pss+swap vs Time
[2025-11-24 22:54:51] 2025-11-25 03:54:29,841 | INFO     | sum of square deviations: 127702313920.69753
[2025-11-24 22:54:51] 2025-11-25 03:54:29,853 | INFO     | sum of deviations: 777286835545.4636
[2025-11-24 22:54:51] 2025-11-25 03:54:29,853 | INFO     | time since job start (45420s) is within the limit (172800.0s)
[2025-11-24 22:54:51] 2025-11-25 03:54:29,854 | INFO     | mean x: 1764020143.0201614
[2025-11-24 22:54:51] 2025-11-25 03:54:29,854 | INFO     | mean y: 2875044.9690860217
[2025-11-24 22:54:51] 2025-11-25 03:54:29,854 | INFO     | intersect: -10734202402.649242
[2025-11-24 22:54:51] 2025-11-25 03:54:29,855 | INFO     | chi2: 5.386378936990333
[2025-11-24 22:54:51] 2025-11-25 03:54:29,856 | INFO     | sum of square deviations: 125145063074.33554
[2025-11-24 22:54:51] 2025-11-25 03:54:29,868 | INFO     | sum of deviations: 1007698601851.4786
[2025-11-24 22:54:51] 2025-11-25 03:54:29,869 | INFO     | mean x: 1764019990.5236807
[2025-11-24 22:54:51] 2025-11-25 03:54:29,869 | INFO     | mean y: 2888780.5155615695
[2025-11-24 22:54:51] 2025-11-25 03:54:29,869 | INFO     | intersect: -14201430865.980488
[2025-11-24 22:54:51] 2025-11-25 03:54:29,870 | INFO     | chi2: 2.613382729818801
[2025-11-24 22:54:51] 2025-11-25 03:54:29,870 | INFO     | current chi2=2.613382729818801 (change=51.4816398847898 %)
[2025-11-24 22:54:51] 2025-11-25 03:54:29,871 | INFO     | sum of square deviations: 122622184965.45499
[2025-11-24 22:54:51] 2025-11-25 03:54:29,882 | INFO     | sum of deviations: 1045422409895.7119
[2025-11-24 22:54:51] 2025-11-25 03:54:29,882 | INFO     | mean x: 1764019838.027248
[2025-11-24 22:54:51] 2025-11-25 03:54:29,882 | INFO     | mean y: 2891054.1144414167
[2025-11-24 22:54:51] 2025-11-25 03:54:29,882 | INFO     | intersect: -15036360372.48361
[2025-11-24 22:54:51] 2025-11-25 03:54:29,883 | INFO     | chi2: 2.438640710944291
[2025-11-24 22:54:51] 2025-11-25 03:54:29,883 | INFO     | current chi2=2.438640710944291 (change=6.6864304596757576 %)
[2025-11-24 22:54:51] 2025-11-25 03:54:29,884 | INFO     | right removable region: 733
[2025-11-24 22:54:51] 2025-11-25 03:54:29,884 | INFO     | sum of square deviations: 125144827004.33563
[2025-11-24 22:54:51] 2025-11-25 03:54:29,896 | INFO     | sum of deviations: 573917569908.0669
[2025-11-24 22:54:51] 2025-11-25 03:54:29,896 | INFO     | mean x: 1764020295.5236807
[2025-11-24 22:54:51] 2025-11-25 03:54:29,896 | INFO     | mean y: 2887150.710419486
[2025-11-24 22:54:51] 2025-11-25 03:54:29,896 | INFO     | intersect: -8086957755.466854
[2025-11-24 22:54:51] 2025-11-25 03:54:29,897 | INFO     | chi2: 3.0845905369925974
[2025-11-24 22:54:51] 2025-11-25 03:54:29,897 | INFO     | current chi2=3.0845905369925974 (change=42.733502913997945 %)
[2025-11-24 22:54:51] 2025-11-25 03:54:29,898 | INFO     | sum of square deviations: 122621757660.50838
[2025-11-24 22:54:51] 2025-11-25 03:54:29,909 | INFO     | sum of deviations: 532083075342.3741
[2025-11-24 22:54:51] 2025-11-25 03:54:29,909 | INFO     | mean x: 1764020448.0258856
[2025-11-24 22:54:51] 2025-11-25 03:54:29,909 | INFO     | mean y: 2889677.7697547683
[2025-11-24 22:54:51] 2025-11-25 03:54:29,909 | INFO     | intersect: -7651587332.3468075
[2025-11-24 22:54:51] 2025-11-25 03:54:29,910 | INFO     | chi2: 3.042360951923864
[2025-11-24 22:54:51] 2025-11-25 03:54:29,910 | INFO     | current chi2=3.042360951923864 (change=1.3690499456017313 %)
[2025-11-24 22:54:51] 2025-11-25 03:54:29,910 | INFO     | left removable region: 20
[2025-11-24 22:54:51] 2025-11-25 03:54:29,911 | INFO     | sum of square deviations: 112395475881.33789
[2025-11-24 22:54:51] 2025-11-25 03:54:29,921 | INFO     | sum of deviations: 748845373482.0798
[2025-11-24 22:54:51] 2025-11-25 03:54:29,922 | INFO     | mean x: 1764020417.5357645
[2025-11-24 22:54:51] 2025-11-25 03:54:29,922 | INFO     | mean y: 2909037.7615708276
[2025-11-24 22:54:51] 2025-11-25 03:54:29,922 | INFO     | intersect: -11750042031.142786
[2025-11-24 22:54:51] 2025-11-25 03:54:29,923 | INFO     | chi2: 0.06292875127378698
[2025-11-24 22:54:51] 2025-11-25 03:54:29,923 | INFO     | current memory leak: 6.66 B/s (using 713 data points, chi2=0.06)
[2025-11-24 22:54:51] 2025-11-25 03:54:29,923 | INFO     | could have reported an average CPU frequency of 2159 MHz (28 samples)
[2025-11-24 22:54:51] 2025-11-25 03:54:29,923 | INFO     | ..............................
[2025-11-24 22:54:51] 2025-11-25 03:54:29,924 | INFO     | . Timing measurements:
[2025-11-24 22:54:51] 2025-11-25 03:54:29,924 | INFO     | . get job = 0 s
[2025-11-24 22:54:51] 2025-11-25 03:54:29,924 | INFO     | . initial setup = 2 s
[2025-11-24 22:54:51] 2025-11-25 03:54:29,924 | INFO     | . payload setup = 8 s
[2025-11-24 22:54:51] 2025-11-25 03:54:29,924 | INFO     | . stage-in = 0 s
[2025-11-24 22:54:51] 2025-11-25 03:54:29,924 | INFO     | . payload execution = 45376 s
[2025-11-24 22:54:51] 2025-11-25 03:54:29,924 | INFO     | . stage-out = 3 s
[2025-11-24 22:54:51] 2025-11-25 03:54:29,924 | INFO     | . log creation = 0 s
[2025-11-24 22:54:51] 2025-11-25 03:54:29,924 | INFO     | ..............................
[2025-11-24 22:54:51] 2025-11-25 03:54:30,024 | INFO     | 
[2025-11-24 22:54:51] 2025-11-25 03:54:30,027 | INFO     | job summary report
[2025-11-24 22:54:51] 2025-11-25 03:54:30,027 | INFO     | --------------------------------------------------
[2025-11-24 22:54:51] 2025-11-25 03:54:30,027 | INFO     | PanDA job id: 6895355679
[2025-11-24 22:54:51] 2025-11-25 03:54:30,027 | INFO     | task id: 47556137
[2025-11-24 22:54:51] 2025-11-25 03:54:30,027 | INFO     | errors: (none)
[2025-11-24 22:54:51] 2025-11-25 03:54:30,028 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 22:54:51] 2025-11-25 03:54:30,028 | INFO     | pilot state: finished 
[2025-11-24 22:54:51] 2025-11-25 03:54:30,028 | INFO     | transexitcode: 0
[2025-11-24 22:54:51] 2025-11-25 03:54:30,028 | INFO     | exeerrorcode: 0
[2025-11-24 22:54:51] 2025-11-25 03:54:30,028 | INFO     | exeerrordiag: 
[2025-11-24 22:54:51] 2025-11-25 03:54:30,028 | INFO     | exitcode: 0
[2025-11-24 22:54:51] 2025-11-25 03:54:30,029 | INFO     | exitmsg: OK
[2025-11-24 22:54:51] 2025-11-25 03:54:30,029 | INFO     | cpuconsumptiontime: 351742 s
[2025-11-24 22:54:51] 2025-11-25 03:54:30,029 | INFO     | nevents: 1000
[2025-11-24 22:54:51] 2025-11-25 03:54:30,029 | INFO     | neventsw: 0
[2025-11-24 22:54:51] 2025-11-25 03:54:30,029 | INFO     | pid: 9645
[2025-11-24 22:54:51] 2025-11-25 03:54:30,029 | INFO     | pgrp: 9645
[2025-11-24 22:54:51] 2025-11-25 03:54:30,029 | INFO     | corecount: 8
[2025-11-24 22:54:51] 2025-11-25 03:54:30,029 | INFO     | event service: False
[2025-11-24 22:54:51] 2025-11-25 03:54:30,030 | INFO     | sizes: {0: 2284138, 1: 2284337, 6: 2284599, 11: 2284627, 45389: 2330721, 45390: 2330720, 45395: 2339898, 45397: 2339982, 45403: 2340228}
[2025-11-24 22:54:51] 2025-11-25 03:54:30,030 | INFO     | --------------------------------------------------
[2025-11-24 22:54:51] 2025-11-25 03:54:30,030 | INFO     | 
[2025-11-24 22:54:51] 2025-11-25 03:54:30,030 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-24 22:54:51] 2025-11-25 03:54:30,059 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 22:54:51] 2025-11-25 03:54:30,059 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 22:54:51] 2025-11-25 03:54:30,060 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 22:54:51] 2025-11-25 03:54:30,060 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 22:54:51] 2025-11-25 03:54:30,060 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 22:54:51] 2025-11-25 03:54:30,060 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 22:54:51] 2025-11-25 03:54:30,060 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 22:54:51] 2025-11-25 03:54:30,061 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 22:54:51] 2025-11-25 03:54:30,061 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 22:54:51] 2025-11-25 03:54:30,061 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 22:54:51] 2025-11-25 03:54:30,061 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 22:54:51] 2025-11-25 03:54:30,061 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 22:54:51] 2025-11-25 03:54:30,061 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 22:54:51] 2025-11-25 03:54:30,062 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 22:54:51] 2025-11-25 03:54:30,062 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 22:54:51] 2025-11-25 03:54:30,062 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 22:54:51] 2025-11-25 03:54:30,062 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 22:54:51] 2025-11-25 03:54:30,062 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 22:54:51] 2025-11-25 03:54:30,063 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 22:54:51] 2025-11-25 03:54:30,063 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 22:54:51] 2025-11-25 03:54:30,063 | INFO     | job 6895355679 has completed (purged errors)
[2025-11-24 22:54:51] 2025-11-25 03:54:30,063 | INFO     | overall cleanup function is called
[2025-11-24 22:54:51] 2025-11-25 03:54:31,075 | INFO     | --- collectZombieJob: --- 10, [9645]
[2025-11-24 22:54:51] 2025-11-25 03:54:31,076 | INFO     | zombie collector waiting for pid 9645
[2025-11-24 22:54:51] 2025-11-25 03:54:31,081 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 22:54:51] 2025-11-25 03:54:31,081 | INFO     | collected zombie processes
[2025-11-24 22:54:51] 2025-11-25 03:54:31,081 | INFO     | will attempt to kill all subprocesses of pid=9645
[2025-11-24 22:54:51] 2025-11-25 03:54:31,174 | INFO     | process IDs to be killed: [9645] (in reverse order)
[2025-11-24 22:54:51] 2025-11-25 03:54:31,225 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 22:54:51] 2025-11-25 03:54:31,226 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 22:54:51] 2025-11-25 03:54:31,230 | INFO     | did not find any defunct processes belonging to 9645
[2025-11-24 22:54:51] 2025-11-25 03:54:31,235 | INFO     | did not find any defunct processes belonging to 9645
[2025-11-24 22:54:51] 2025-11-25 03:54:31,237 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 22:54:51] 2025-11-25 03:54:31,237 | INFO     | ready for new job
[2025-11-24 22:54:51] 2025-11-25 03:54:31,237 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 22:54:51] 2025-11-25 03:54:31,241 | INFO     | ***************************************
[2025-11-24 22:54:51] 2025-11-25 03:54:31,241 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 22:54:51] 2025-11-25 03:54:31,242 | INFO     | ***************************************
[2025-11-24 22:54:51] 2025-11-25 03:54:31,242 | INFO     | 
[2025-11-24 22:54:51] 2025-11-25 03:54:31,242 | INFO     | architecture information:
[2025-11-24 22:54:51] 2025-11-25 03:54:31,243 | INFO     | executing command: cat /etc/os-release
[2025-11-24 22:54:51] 2025-11-25 03:54:31,261 | INFO     | cat /etc/os-release:
[2025-11-24 22:54:51] NAME="CentOS Linux"
[2025-11-24 22:54:51] VERSION="7 (Core)"
[2025-11-24 22:54:51] ID="centos"
[2025-11-24 22:54:51] ID_LIKE="rhel fedora"
[2025-11-24 22:54:51] VERSION_ID="7"
[2025-11-24 22:54:51] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 22:54:51] ANSI_COLOR="0;31"
[2025-11-24 22:54:51] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 22:54:51] HOME_URL="https://www.centos.org/"
[2025-11-24 22:54:51] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 22:54:51] 
[2025-11-24 22:54:51] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 22:54:51] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 22:54:51] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 22:54:51] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 22:54:51] 
[2025-11-24 22:54:51] 2025-11-25 03:54:31,261 | INFO     | ***************************************
[2025-11-24 22:54:51] 2025-11-25 03:54:31,765 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-24 22:54:51] 2025-11-25 03:54:31,784 | INFO     | sufficient remaining disk space (17443061760 B)
[2025-11-24 22:54:51] 2025-11-25 03:54:31,784 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 22:54:51] 2025-11-25 03:54:31,785 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 22:54:51] 2025-11-25 03:54:31,785 | INFO     | update_server=False
[2025-11-24 22:54:51] 2025-11-25 03:54:31,785 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 22:54:51] 2025-11-25 03:54:31,785 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-11-24 22:54:51] 2025-11-25 03:54:31,786 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 22:54:51] 2025-11-25 03:54:31,786 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 22:54:51] 2025-11-25 03:54:31,786 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 22:54:51] 2025-11-25 03:54:31,787 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 22:54:51] 2025-11-25 03:54:31,787 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 22:54:51] 2025-11-25 03:54:31,788 | INFO     | aborting loop
[2025-11-24 22:54:51] 2025-11-25 03:54:32,385 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 22:54:51] 2025-11-25 03:54:32,487 | INFO     | all data control threads have been joined
[2025-11-24 22:54:51] 2025-11-25 03:54:32,494 | INFO     | all job control threads have been joined
[2025-11-24 22:54:51] 2025-11-25 03:54:32,791 | INFO     | [job] retrieve thread has finished
[2025-11-24 22:54:51] 2025-11-25 03:54:32,792 | INFO     | [job] queue monitor thread has finished
[2025-11-24 22:54:51] 2025-11-25 03:54:32,794 | INFO     | [job] job monitor thread has finished
[2025-11-24 22:54:51] 2025-11-25 03:54:32,870 | INFO     | [payload] failed_post thread has finished
[2025-11-24 22:54:51] 2025-11-25 03:54:33,094 | INFO     | all payload control threads have been joined
[2025-11-24 22:54:51] 2025-11-25 03:54:33,146 | INFO     | [job] validate thread has finished
[2025-11-24 22:54:51] 2025-11-25 03:54:33,311 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 22:54:51] 2025-11-25 03:54:33,361 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 22:54:51] 2025-11-25 03:54:33,493 | INFO     | [data] control thread has finished
[2025-11-24 22:54:51] 2025-11-25 03:54:33,500 | INFO     | [job] control thread has finished
[2025-11-24 22:54:51] 2025-11-25 03:54:33,556 | INFO     | [payload] validate_post thread has finished
[2025-11-24 22:54:51] 2025-11-25 03:54:34,036 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 22:54:51] 2025-11-25 03:54:34,099 | INFO     | [payload] control thread has finished
[2025-11-24 22:54:51] 2025-11-25 03:54:34,139 | INFO     | [data] copytool_in thread has finished
[2025-11-24 22:54:51] 2025-11-25 03:54:34,391 | INFO     | [data] copytool_out thread has finished
[2025-11-24 22:54:51] 2025-11-25 03:54:34,575 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 22:54:51] 2025-11-25 03:54:38,581 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 22:54:51] 2025-11-25 03:54:42,513 | INFO     | job.realtimelogging is not enabled
[2025-11-24 22:54:51] 2025-11-25 03:54:43,517 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 22:54:51] 2025-11-25 03:54:44,703 | INFO     | [monitor] cgroup control has ended
[2025-11-24 22:54:51] 2025-11-25 03:54:46,014 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140248190224192)>', '<ExcThread(monitor, started 140247207745280)>']
[2025-11-24 22:54:51] 2025-11-25 03:54:46,863 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 22:54:51] 2025-11-25 03:54:46,863 | INFO     | [monitor] control thread has ended
[2025-11-24 22:54:51] 2025-11-25 03:54:51,033 | INFO     | all workflow threads have been joined
[2025-11-24 22:54:51] 2025-11-25 03:54:51,034 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 22:54:51] 2025-11-25 03:54:51,034 | INFO     | traces error code: 0
[2025-11-24 22:54:51] 2025-11-25 03:54:51,035 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 22:54:51] 2025-11-25 03:54:51,151 [wrapper] ==== pilot stdout END ====
[2025-11-24 22:54:51] 2025-11-25 03:54:51,156 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 22:54:51] 2025-11-25 03:54:51,161 [wrapper] pilotpid: 3136
[2025-11-24 22:54:51] 2025-11-25 03:54:51,165 [wrapper] Pilot exit status: 0
[2025-11-24 22:54:51] 2025-11-25 03:54:51,181 [wrapper] pandaids: 6895355679
[2025-11-24 22:54:51] 2025-11-25 03:54:51,224 [wrapper] cleanup supervisor_pilot  9500 3137
[2025-11-24 22:54:51] 2025-11-25 03:54:51,228 [wrapper] Test setup, not cleaning
[2025-11-24 22:54:51] 2025-11-25 03:54:51,233 [wrapper] apfmon messages muted
[2025-11-24 22:54:51] 2025-11-25 03:54:51,238 [wrapper] ==== wrapper stdout END ====
[2025-11-24 22:54:51] 2025-11-25 03:54:51,242 [wrapper] ==== wrapper stderr END ====
[2025-11-24 22:54:51]  *** Error codes and diagnostics ***
[2025-11-24 22:54:51]     "exeErrorCode": 0,
[2025-11-24 22:54:51]     "exeErrorDiag": "",
[2025-11-24 22:54:51]     "pilotErrorCode": 0,
[2025-11-24 22:54:51]     "pilotErrorDiag": "",
[2025-11-24 22:54:51]  *** Listing of results directory ***
[2025-11-24 22:54:51] total 1309036
[2025-11-24 22:54:51] -rw-r--r-- 1 boincer umatlas    576529 Nov 23 03:03 pilot3.tar.gz
[2025-11-24 22:54:51] -rw-r--r-- 1 boincer umatlas      5112 Nov 23 03:12 queuedata.json
[2025-11-24 22:54:51] -rwx------ 1 boincer umatlas     36292 Nov 23 03:14 runpilot2-wrapper.sh
[2025-11-24 22:54:51] -rw-r--r-- 1 boincer umatlas       100 Nov 24 10:17 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 22:54:51] -rwxr-xr-x 1 boincer umatlas      7986 Nov 24 10:17 run_atlas
[2025-11-24 22:54:51] -rw-r--r-- 1 boincer umatlas       105 Nov 24 10:17 job.xml
[2025-11-24 22:54:51] -rw-r--r-- 2 boincer umatlas 410240486 Nov 24 10:17 EVNT.47483658._000669.pool.root.1
[2025-11-24 22:54:51] -rw-r--r-- 2 boincer umatlas     15847 Nov 24 10:17 start_atlas.sh
[2025-11-24 22:54:51] drwxrwx--x 2 boincer umatlas      4096 Nov 24 10:17 shared
[2025-11-24 22:54:51] -rw-r--r-- 2 boincer umatlas    590095 Nov 24 10:17 input.tar.gz
[2025-11-24 22:54:51] -rw-r--r-- 1 boincer umatlas         0 Nov 24 10:17 boinc_lockfile
[2025-11-24 22:54:51] -rw-r--r-- 1 boincer umatlas      2785 Nov 24 10:17 pandaJob.out
[2025-11-24 22:54:51] -rw------- 1 boincer umatlas        57 Nov 24 10:17 setup.sh.local
[2025-11-24 22:54:51] -rw------- 1 boincer umatlas    987541 Nov 24 10:17 agis_schedconf.cvmfs.json
[2025-11-24 22:54:51] drwx------ 5 boincer umatlas      4096 Nov 24 10:17 pilot3
[2025-11-24 22:54:51] -rw-r--r-- 1 boincer umatlas       532 Nov 24 22:44 boinc_task_state.xml
[2025-11-24 22:54:51] -rw-r--r-- 1 boincer umatlas      5913 Nov 24 22:48 init_data.xml
[2025-11-24 22:54:51] -rw------- 1 boincer umatlas        95 Nov 24 22:53 pilot_heartbeat.json
[2025-11-24 22:54:51] -rw------- 1 boincer umatlas 909805140 Nov 24 22:53 HITS.47556137._006642.pool.root.1
[2025-11-24 22:54:51] -rw------- 1 boincer umatlas      1064 Nov 24 22:54 memory_monitor_summary.json
[2025-11-24 22:54:51] -rw------- 1 boincer umatlas   1516227 Nov 24 22:54 agis_ddmendpoints.agis.ALL.json
[2025-11-24 22:54:51] -rw------- 1 boincer umatlas   1992323 Nov 24 22:54 log.47556137._006642.job.log.tgz.1
[2025-11-24 22:54:51] -rw------- 1 boincer umatlas      8661 Nov 24 22:54 heartbeat.json
[2025-11-24 22:54:51] -rw-r--r-- 1 boincer umatlas      8192 Nov 24 22:54 boinc_mmap_file
[2025-11-24 22:54:51] -rw-r--r-- 1 boincer umatlas        29 Nov 24 22:54 wrapper_checkpoint.txt
[2025-11-24 22:54:51] -rw------- 1 boincer umatlas      4624 Nov 24 22:54 pilotlog.txt
[2025-11-24 22:54:51] -rw------- 1 boincer umatlas   6250845 Nov 24 22:54 log.47556137._006642.job.log.1
[2025-11-24 22:54:51] -rw------- 1 boincer umatlas       353 Nov 24 22:54 output.list
[2025-11-24 22:54:51] -rw-r--r-- 1 boincer umatlas       620 Nov 24 22:54 runtime_log
[2025-11-24 22:54:51] -rw------- 1 boincer umatlas   8263680 Nov 24 22:54 result.tar.gz
[2025-11-24 22:54:51] -rw------- 1 boincer umatlas       668 Nov 24 22:54 vDzLDm7PKh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmGkKKDmKWWGhm.diag
[2025-11-24 22:54:51] -rw-r--r-- 1 boincer umatlas      9343 Nov 24 22:54 runtime_log.err
[2025-11-24 22:54:51] -rw-r--r-- 1 boincer umatlas     21222 Nov 24 22:54 stderr.txt
[2025-11-24 22:54:51] HITS file was successfully produced:
[2025-11-24 22:54:51] -rw------- 1 boincer umatlas 909805140 Nov 24 22:53 shared/HITS.pool.root.1
[2025-11-24 22:54:51]  *** Contents of shared directory: ***
[2025-11-24 22:54:51] total 1297784
[2025-11-24 22:54:51] -rw-r--r-- 2 boincer umatlas 410240486 Nov 24 10:17 ATLAS.root_0
[2025-11-24 22:54:51] -rw-r--r-- 2 boincer umatlas     15847 Nov 24 10:17 start_atlas.sh
[2025-11-24 22:54:51] -rw-r--r-- 2 boincer umatlas    590095 Nov 24 10:17 input.tar.gz
[2025-11-24 22:54:51] -rw------- 1 boincer umatlas 909805140 Nov 24 22:53 HITS.pool.root.1
[2025-11-24 22:54:51] -rw------- 1 boincer umatlas   8263680 Nov 24 22:54 result.tar.gz
22:54:52 (31817): run_atlas exited; CPU time 347714.682347
22:54:52 (31817): called boinc_finish(0)

</stderr_txt>
]]>

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