Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
15:32:10 (1567): wrapper (7.7.26015): starting
15:32:10 (1567): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 15:32:10] Arguments: --nthreads 8
[2025-11-25 15:32:10] Threads: 8
[2025-11-25 15:32:10] Checking for CVMFS
[2025-11-25 15:32:12] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 15:32:12] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 15:32:12] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 15:32:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 15:32:15] 2.11.2.0 13351 77445 86164 153285 2 61 20896351 25165825 4632 130560 17 23609674 99.850 17512144 1936 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-25 15:32:15] CVMFS is ok
[2025-11-25 15:32:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 15:32:15] Checking for apptainer binary...
[2025-11-25 15:32:15] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 15:32:15] Running /usr/bin/apptainer --version
[2025-11-25 15:32:15] apptainer version 1.3.2-1.el7
[2025-11-25 15:32:15] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 15:32:23] cg-vwn287.simple-grid.lan
[2025-11-25 15:32:23] apptainer works
[2025-11-25 15:32:23] Set ATHENA_PROC_NUMBER=8
[2025-11-25 15:32:23] Set ATHENA_CORE_NUMBER=8
[2025-11-25 15:32:24] Starting ATLAS job with PandaID=6893847959
[2025-11-25 15:32:24] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/19 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 16:26:19]  *** The last 200 lines of the pilot log: ***
[2025-11-26 16:26:19] 2025-11-26 15:25:33,267 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 16:26:19] 2025-11-26 15:25:33,736 | INFO     | time since job start (89361s) is within the limit (172800.0s)
[2025-11-26 16:26:19] 2025-11-26 15:25:35,743 | INFO     | time since job start (89363s) is within the limit (172800.0s)
[2025-11-26 16:26:19] 2025-11-26 15:25:35,771 | INFO     | monitor loop #5995: job 0:6893847959 is in state 'finished'
[2025-11-26 16:26:19] 2025-11-26 15:25:35,771 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 16:26:19] 2025-11-26 15:25:36,957 | INFO     | PID=5359 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-26 16:26:19] 2025-11-26 15:25:36,958 | INFO     | .. there are 9 such processes running
[2025-11-26 16:26:19] 2025-11-26 15:25:37,958 | INFO     | time since job start (89365s) is within the limit (172800.0s)
[2025-11-26 16:26:19] 2025-11-26 15:25:38,290 | INFO     | monitor loop #5996: job 0:6893847959 is in state 'finished'
[2025-11-26 16:26:19] 2025-11-26 15:25:38,290 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 16:26:19] 2025-11-26 15:25:39,966 | INFO     | time since job start (89367s) is within the limit (172800.0s)
[2025-11-26 16:26:19] 2025-11-26 15:25:40,794 | INFO     | monitor loop #5997: job 0:6893847959 is in state 'finished'
[2025-11-26 16:26:19] 2025-11-26 15:25:40,794 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 16:26:19] 2025-11-26 15:25:41,976 | INFO     | time since job start (89369s) is within the limit (172800.0s)
[2025-11-26 16:26:19] 2025-11-26 15:25:43,014 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-26 16:26:19] 2025-11-26 15:25:43,015 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-26 16:26:19] 2025-11-26 15:25:43,017 | INFO     | using path: /var/lib/boinc/slots/19/PanDA_Pilot-6893847959/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 16:26:19] 2025-11-26 15:25:43,018 | INFO     | extracted standard info from prmon json
[2025-11-26 16:26:19] 2025-11-26 15:25:43,018 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 16:26:19] 2025-11-26 15:25:43,018 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 16:26:19] 2025-11-26 15:25:43,047 | INFO     | fitting pss+swap vs Time
[2025-11-26 16:26:19] 2025-11-26 15:25:43,049 | INFO     | sum of square deviations: 955136009429.8175
[2025-11-26 16:26:19] 2025-11-26 15:25:43,133 | INFO     | sum of deviations: 4275644947118.3687
[2025-11-26 16:26:19] 2025-11-26 15:25:43,133 | INFO     | mean x: 1764126247.1463919
[2025-11-26 16:26:19] 2025-11-26 15:25:43,134 | INFO     | mean y: 2837968.6790378005
[2025-11-26 16:26:19] 2025-11-26 15:25:43,134 | INFO     | intersect: -7894233652.767977
[2025-11-26 16:26:19] 2025-11-26 15:25:43,136 | INFO     | chi2: 23.029759787866276
[2025-11-26 16:26:19] 2025-11-26 15:25:43,138 | INFO     | sum of square deviations: 945323506265.736
[2025-11-26 16:26:19] 2025-11-26 15:25:43,207 | INFO     | sum of deviations: 4770746463435.927
[2025-11-26 16:26:19] 2025-11-26 15:25:43,207 | INFO     | mean x: 1764126094.6503448
[2025-11-26 16:26:19] 2025-11-26 15:25:43,207 | INFO     | mean y: 2845662.8420689655
[2025-11-26 16:26:19] 2025-11-26 15:25:43,207 | INFO     | intersect: -8900136513.44407
[2025-11-26 16:26:19] 2025-11-26 15:25:43,209 | INFO     | chi2: 19.68615377002094
[2025-11-26 16:26:19] 2025-11-26 15:25:43,209 | INFO     | current chi2=19.68615377002094 (change=14.5186317557988 %)
[2025-11-26 16:26:19] 2025-11-26 15:25:43,209 | INFO     | right removable region: 1449
[2025-11-26 16:26:19] 2025-11-26 15:25:43,212 | INFO     | sum of square deviations: 945322488785.7369
[2025-11-26 16:26:19] 2025-11-26 15:25:43,289 | INFO     | sum of deviations: 3658298626387.6577
[2025-11-26 16:26:19] 2025-11-26 15:25:43,289 | INFO     | mean x: 1764126399.6503448
[2025-11-26 16:26:19] 2025-11-26 15:25:43,289 | INFO     | mean y: 2847561.9855172415
[2025-11-26 16:26:19] 2025-11-26 15:25:43,289 | INFO     | intersect: -6824136098.272914
[2025-11-26 16:26:19] 2025-11-26 15:25:43,291 | INFO     | chi2: 18.138465099533523
[2025-11-26 16:26:19] 2025-11-26 15:25:43,291 | INFO     | current chi2=18.138465099533523 (change=21.23901739917338 %)
[2025-11-26 16:26:19] 2025-11-26 15:25:43,292 | INFO     | left removable region: 10
[2025-11-26 16:26:19] 2025-11-26 15:25:43,294 | INFO     | sum of square deviations: 923971036696.5588
[2025-11-26 16:26:19] 2025-11-26 15:25:43,314 | INFO     | monitor loop #5998: job 0:6893847959 is in state 'finished'
[2025-11-26 16:26:19] 2025-11-26 15:25:43,327 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 16:26:19] 2025-11-26 15:25:43,370 | INFO     | sum of deviations: 3722495678540.7954
[2025-11-26 16:26:19] 2025-11-26 15:25:43,371 | INFO     | mean x: 1764126369.1591382
[2025-11-26 16:26:19] 2025-11-26 15:25:43,371 | INFO     | mean y: 2865907.3502432243
[2025-11-26 16:26:19] 2025-11-26 15:25:43,371 | INFO     | intersect: -7104448634.752019
[2025-11-26 16:26:19] 2025-11-26 15:25:43,373 | INFO     | chi2: 10.002955485020967
[2025-11-26 16:26:19] 2025-11-26 15:25:43,373 | INFO     | current memory leak: 4.03 B/s (using 1439 data points, chi2=10.00)
[2025-11-26 16:26:19] 2025-11-26 15:25:43,374 | INFO     | could have reported an average CPU frequency of 1999 MHz (49 samples)
[2025-11-26 16:26:19] 2025-11-26 15:25:43,374 | INFO     | ..............................
[2025-11-26 16:26:19] 2025-11-26 15:25:43,374 | INFO     | . Timing measurements:
[2025-11-26 16:26:19] 2025-11-26 15:25:43,375 | INFO     | . get job = 0 s
[2025-11-26 16:26:19] 2025-11-26 15:25:43,375 | INFO     | . initial setup = 8 s
[2025-11-26 16:26:19] 2025-11-26 15:25:43,375 | INFO     | . payload setup = 161 s
[2025-11-26 16:26:19] 2025-11-26 15:25:43,375 | INFO     | . stage-in = 0 s
[2025-11-26 16:26:19] 2025-11-26 15:25:43,375 | INFO     | . payload execution = 88916 s
[2025-11-26 16:26:19] 2025-11-26 15:25:43,375 | INFO     | . stage-out = 5 s
[2025-11-26 16:26:19] 2025-11-26 15:25:43,375 | INFO     | . log creation = 2 s
[2025-11-26 16:26:19] 2025-11-26 15:25:43,375 | INFO     | ..............................
[2025-11-26 16:26:19] 2025-11-26 15:25:43,490 | INFO     | 
[2025-11-26 16:26:19] 2025-11-26 15:25:43,491 | INFO     | job summary report
[2025-11-26 16:26:19] 2025-11-26 15:25:43,491 | INFO     | --------------------------------------------------
[2025-11-26 16:26:19] 2025-11-26 15:25:43,491 | INFO     | PanDA job id: 6893847959
[2025-11-26 16:26:19] 2025-11-26 15:25:43,491 | INFO     | task id: 47523449
[2025-11-26 16:26:19] 2025-11-26 15:25:43,491 | INFO     | errors: (none)
[2025-11-26 16:26:19] 2025-11-26 15:25:43,491 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 16:26:19] 2025-11-26 15:25:43,491 | INFO     | pilot state: finished 
[2025-11-26 16:26:19] 2025-11-26 15:25:43,491 | INFO     | transexitcode: 0
[2025-11-26 16:26:19] 2025-11-26 15:25:43,492 | INFO     | exeerrorcode: 0
[2025-11-26 16:26:19] 2025-11-26 15:25:43,492 | INFO     | exeerrordiag: 
[2025-11-26 16:26:19] 2025-11-26 15:25:43,492 | INFO     | exitcode: 0
[2025-11-26 16:26:19] 2025-11-26 15:25:43,492 | INFO     | exitmsg: OK
[2025-11-26 16:26:19] 2025-11-26 15:25:43,492 | INFO     | cpuconsumptiontime: 333806 s
[2025-11-26 16:26:19] 2025-11-26 15:25:43,492 | INFO     | nevents: 1000
[2025-11-26 16:26:19] 2025-11-26 15:25:43,492 | INFO     | neventsw: 0
[2025-11-26 16:26:19] 2025-11-26 15:25:43,492 | INFO     | pid: 11911
[2025-11-26 16:26:19] 2025-11-26 15:25:43,492 | INFO     | pgrp: 11911
[2025-11-26 16:26:19] 2025-11-26 15:25:43,492 | INFO     | corecount: 8
[2025-11-26 16:26:19] 2025-11-26 15:25:43,493 | INFO     | event service: False
[2025-11-26 16:26:19] 2025-11-26 15:25:43,493 | INFO     | sizes: {0: 2284089, 1: 2284173, 2: 2284372, 13: 2284372, 23: 2284428, 34: 2284456, 45: 2284612, 56: 2284640, 66: 2284668, 77: 2284696, 88: 2284752, 95: 2285322, 99
[2025-11-26 16:26:19] 2025-11-26 15:25:43,493 | INFO     | --------------------------------------------------
[2025-11-26 16:26:19] 2025-11-26 15:25:43,493 | INFO     | 
[2025-11-26 16:26:19] 2025-11-26 15:25:43,493 | INFO     | executing command: ls -lF /var/lib/boinc/slots/19
[2025-11-26 16:26:19] 2025-11-26 15:25:43,862 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 16:26:19] 2025-11-26 15:25:43,862 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 16:26:19] 2025-11-26 15:25:43,862 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 16:26:19] 2025-11-26 15:25:43,862 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 16:26:19] 2025-11-26 15:25:43,862 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 16:26:19] 2025-11-26 15:25:43,863 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 16:26:19] 2025-11-26 15:25:43,863 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 16:26:19] 2025-11-26 15:25:43,863 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 16:26:19] 2025-11-26 15:25:43,863 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 16:26:19] 2025-11-26 15:25:43,863 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 16:26:19] 2025-11-26 15:25:43,863 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 16:26:19] 2025-11-26 15:25:43,863 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 16:26:19] 2025-11-26 15:25:43,863 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 16:26:19] 2025-11-26 15:25:43,864 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 16:26:19] 2025-11-26 15:25:43,864 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 16:26:19] 2025-11-26 15:25:43,864 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 16:26:19] 2025-11-26 15:25:43,864 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 16:26:19] 2025-11-26 15:25:43,864 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 16:26:19] 2025-11-26 15:25:43,864 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 16:26:19] 2025-11-26 15:25:43,864 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 16:26:19] 2025-11-26 15:25:43,864 | INFO     | job 6893847959 has completed (purged errors)
[2025-11-26 16:26:19] 2025-11-26 15:25:43,865 | INFO     | overall cleanup function is called
[2025-11-26 16:26:19] 2025-11-26 15:25:44,884 | INFO     | --- collectZombieJob: --- 10, [11911]
[2025-11-26 16:26:19] 2025-11-26 15:25:44,884 | INFO     | zombie collector waiting for pid 11911
[2025-11-26 16:26:19] 2025-11-26 15:25:44,884 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 16:26:19] 2025-11-26 15:25:44,885 | INFO     | collected zombie processes
[2025-11-26 16:26:19] 2025-11-26 15:25:44,885 | INFO     | will attempt to kill all subprocesses of pid=11911
[2025-11-26 16:26:19] 2025-11-26 15:25:45,040 | INFO     | process IDs to be killed: [11911] (in reverse order)
[2025-11-26 16:26:19] 2025-11-26 15:25:45,902 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 16:26:19] 2025-11-26 15:25:45,902 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 16:26:19] 2025-11-26 15:25:45,905 | INFO     | did not find any defunct processes belonging to 11911
[2025-11-26 16:26:19] 2025-11-26 15:25:45,908 | INFO     | did not find any defunct processes belonging to 11911
[2025-11-26 16:26:19] 2025-11-26 15:25:45,941 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 16:26:19] 2025-11-26 15:25:45,941 | INFO     | ready for new job
[2025-11-26 16:26:19] 2025-11-26 15:25:45,942 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 16:26:19] 2025-11-26 15:25:45,947 | INFO     | ***************************************
[2025-11-26 16:26:19] 2025-11-26 15:25:45,947 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 16:26:19] 2025-11-26 15:25:45,947 | INFO     | ***************************************
[2025-11-26 16:26:19] 2025-11-26 15:25:45,947 | INFO     | 
[2025-11-26 16:26:19] 2025-11-26 15:25:45,948 | INFO     | pilot is running in a VM
[2025-11-26 16:26:19] 2025-11-26 15:25:45,948 | INFO     | architecture information:
[2025-11-26 16:26:19] 2025-11-26 15:25:45,955 | INFO     | executing command: cat /etc/os-release
[2025-11-26 16:26:19] 2025-11-26 15:25:46,116 | INFO     | cat /etc/os-release:
[2025-11-26 16:26:19] NAME="CentOS Linux"
[2025-11-26 16:26:19] VERSION="7 (Core)"
[2025-11-26 16:26:19] ID="centos"
[2025-11-26 16:26:19] ID_LIKE="rhel fedora"
[2025-11-26 16:26:19] VERSION_ID="7"
[2025-11-26 16:26:19] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 16:26:19] ANSI_COLOR="0;31"
[2025-11-26 16:26:19] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 16:26:19] HOME_URL="https://www.centos.org/"
[2025-11-26 16:26:19] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 16:26:19] 
[2025-11-26 16:26:19] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 16:26:19] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 16:26:19] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 16:26:19] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 16:26:19] 
[2025-11-26 16:26:19] 2025-11-26 15:25:46,117 | INFO     | ***************************************
[2025-11-26 16:26:19] 2025-11-26 15:25:46,621 | INFO     | executing command: df -mP /var/lib/boinc/slots/19
[2025-11-26 16:26:19] 2025-11-26 15:25:46,806 | INFO     | sufficient remaining disk space (495548628992 B)
[2025-11-26 16:26:19] 2025-11-26 15:25:46,806 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 16:26:19] 2025-11-26 15:25:46,806 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 16:26:19] 2025-11-26 15:25:46,806 | INFO     | update_server=False
[2025-11-26 16:26:19] 2025-11-26 15:25:46,807 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 16:26:19] 2025-11-26 15:25:46,807 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 16:26:19] 2025-11-26 15:25:46,838 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 16:26:19] 2025-11-26 15:25:46,838 | INFO     | aborting loop
[2025-11-26 16:26:19] 2025-11-26 15:25:47,508 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 16:26:19] 2025-11-26 15:25:47,516 | INFO     | [monitor] cgroup control has ended
[2025-11-26 16:26:19] 2025-11-26 15:25:47,526 | INFO     | all job control threads have been joined
[2025-11-26 16:26:19] 2025-11-26 15:25:47,812 | INFO     | [job] retrieve thread has finished
[2025-11-26 16:26:19] 2025-11-26 15:25:47,844 | INFO     | [job] job monitor thread has finished
[2025-11-26 16:26:19] 2025-11-26 15:25:47,846 | INFO     | all payload control threads have been joined
[2025-11-26 16:26:19] 2025-11-26 15:25:47,890 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 16:26:19] 2025-11-26 15:25:47,938 | INFO     | all data control threads have been joined
[2025-11-26 16:26:19] 2025-11-26 15:25:48,092 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 16:26:19] 2025-11-26 15:25:48,504 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 16:26:19] 2025-11-26 15:25:48,531 | INFO     | [job] control thread has finished
[2025-11-26 16:26:19] 2025-11-26 15:25:48,640 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 16:26:19] 2025-11-26 15:25:48,720 | INFO     | [payload] failed_post thread has finished
[2025-11-26 16:26:19] 2025-11-26 15:25:48,814 | INFO     | [data] copytool_out thread has finished
[2025-11-26 16:26:19] 2025-11-26 15:25:48,853 | INFO     | [payload] control thread has finished
[2025-11-26 16:26:19] 2025-11-26 15:25:48,944 | INFO     | [data] control thread has finished
[2025-11-26 16:26:19] 2025-11-26 15:25:48,989 | INFO     | [payload] validate_post thread has finished
[2025-11-26 16:26:19] 2025-11-26 15:25:49,018 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 16:26:19] 2025-11-26 15:25:49,021 | INFO     | [job] validate thread has finished
[2025-11-26 16:26:19] 2025-11-26 15:25:49,291 | INFO     | [data] copytool_in thread has finished
[2025-11-26 16:26:19] 2025-11-26 15:25:49,510 | INFO     | [job] queue monitor thread has finished
[2025-11-26 16:26:19] 2025-11-26 15:25:51,517 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 16:26:19] 2025-11-26 15:25:53,065 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140398831212352)>', '<ExcThread(monitor, started 140398244652800)>']
[2025-11-26 16:26:19] 2025-11-26 15:25:58,091 | INFO     | all workflow threads have been joined
[2025-11-26 16:26:19] 2025-11-26 15:25:58,091 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 16:26:19] 2025-11-26 15:25:58,092 | INFO     | traces error code: 0
[2025-11-26 16:26:19] 2025-11-26 15:25:58,092 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 16:26:19] 2025-11-26 15:26:15,191 | INFO     | PID=5359 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-26 16:26:19] 2025-11-26 15:26:15,191 | INFO     | .. there are 9 such processes running
[2025-11-26 16:26:19] 2025-11-26 15:26:15,192 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 16:26:19] 2025-11-26 15:26:15,192 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 16:26:19] 2025-11-26 15:26:15,192 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 16:26:19] 2025-11-26 15:26:15,193 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 16:26:19] 2025-11-26 15:26:15,193 | INFO     | [monitor] control thread has ended
[2025-11-26 16:26:19] 2025-11-26 15:26:15,502 [wrapper] ==== pilot stdout END ====
[2025-11-26 16:26:19] 2025-11-26 15:26:15,593 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 16:26:19] 2025-11-26 15:26:15,678 [wrapper] pilotpid: 5359
[2025-11-26 16:26:19] 2025-11-26 15:26:15,790 [wrapper] Pilot exit status: 0
[2025-11-26 16:26:19] 2025-11-26 15:26:16,138 [wrapper] pandaids: 6893847959
[2025-11-26 16:26:19] 2025-11-26 15:26:16,855 [wrapper] cleanup supervisor_pilot 24826 5360
[2025-11-26 16:26:19] 2025-11-26 15:26:16,866 [wrapper] Test setup, not cleaning
[2025-11-26 16:26:19] 2025-11-26 15:26:16,869 [wrapper] apfmon messages muted
[2025-11-26 16:26:19] 2025-11-26 15:26:16,956 [wrapper] ==== wrapper stdout END ====
[2025-11-26 16:26:19] 2025-11-26 15:26:17,044 [wrapper] ==== wrapper stderr END ====
[2025-11-26 16:26:19]  *** Error codes and diagnostics ***
[2025-11-26 16:26:19]     "exeErrorCode": 0,
[2025-11-26 16:26:19]     "exeErrorDiag": "",
[2025-11-26 16:26:19]     "pilotErrorCode": 0,
[2025-11-26 16:26:19]     "pilotErrorDiag": "",
[2025-11-26 16:26:19]  *** Listing of results directory ***
[2025-11-26 16:26:19] total 1319576
[2025-11-26 16:26:19] -rw-r--r--. 1 boinc boinc    576529 Nov 20 11:06 pilot3.tar.gz
[2025-11-26 16:26:19] -rwx------. 1 boinc boinc     36292 Nov 20 11:26 runpilot2-wrapper.sh
[2025-11-26 16:26:19] -rw-r--r--. 1 boinc boinc      5112 Nov 20 11:27 queuedata.json
[2025-11-26 16:26:19] -rw-r--r--. 1 boinc boinc       100 Nov 25 15:32 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 16:26:19] -rwxr-xr-x. 1 boinc boinc      7986 Nov 25 15:32 run_atlas
[2025-11-26 16:26:19] -rw-r--r--. 1 boinc boinc       105 Nov 25 15:32 job.xml
[2025-11-26 16:26:19] -rw-r--r--. 1 boinc boinc      6392 Nov 25 15:32 init_data.xml
[2025-11-26 16:26:19] -rw-r--r--. 2 boinc boinc 407832127 Nov 25 15:32 EVNT.47493127._000248.pool.root.1
[2025-11-26 16:26:19] -rw-r--r--. 2 boinc boinc     15847 Nov 25 15:32 start_atlas.sh
[2025-11-26 16:26:19] drwxrwx--x. 2 boinc boinc        68 Nov 25 15:32 shared
[2025-11-26 16:26:19] -rw-r--r--. 2 boinc boinc    590101 Nov 25 15:32 input.tar.gz
[2025-11-26 16:26:19] -rw-r--r--. 1 boinc boinc         0 Nov 25 15:32 boinc_lockfile
[2025-11-26 16:26:19] -rw-r--r--. 1 boinc boinc      2786 Nov 25 15:32 pandaJob.out
[2025-11-26 16:26:19] -rw-------. 1 boinc boinc    991909 Nov 25 15:36 agis_schedconf.cvmfs.json
[2025-11-26 16:26:19] drwx------. 5 boinc boinc      4096 Nov 25 15:36 pilot3
[2025-11-26 16:26:19] -rw-r--r--. 1 boinc boinc       533 Nov 26 16:02 boinc_task_state.xml
[2025-11-26 16:26:19] -rw-------. 1 boinc boinc 910673416 Nov 26 16:22 HITS.47523449._002473.pool.root.1
[2025-11-26 16:26:19] -rw-------. 1 boinc boinc      1031 Nov 26 16:24 memory_monitor_summary.json
[2025-11-26 16:26:19] -rw-------. 1 boinc boinc   1516240 Nov 26 16:24 agis_ddmendpoints.agis.ALL.json
[2025-11-26 16:26:19] -rw-------. 1 boinc boinc   2526156 Nov 26 16:24 log.47523449._002473.job.log.tgz.1
[2025-11-26 16:26:19] -rw-------. 1 boinc boinc      8644 Nov 26 16:25 heartbeat.json
[2025-11-26 16:26:19] -rw-r--r--. 1 boinc boinc      8192 Nov 26 16:26 boinc_mmap_file
[2025-11-26 16:26:19] -rw-r--r--. 1 boinc boinc        29 Nov 26 16:26 wrapper_checkpoint.txt
[2025-11-26 16:26:19] -rw-------. 1 boinc boinc       819 Nov 26 16:26 pilotlog.txt
[2025-11-26 16:26:19] -rw-------. 1 boinc boinc        95 Nov 26 16:26 pilot_heartbeat.json
[2025-11-26 16:26:19] -rw-------. 1 boinc boinc  11894176 Nov 26 16:26 log.47523449._002473.job.log.1
[2025-11-26 16:26:19] -rw-------. 1 boinc boinc       353 Nov 26 16:26 output.list
[2025-11-26 16:26:19] -rw-r--r--. 1 boinc boinc       620 Nov 26 16:26 runtime_log
[2025-11-26 16:26:19] -rw-------. 1 boinc boinc  14438400 Nov 26 16:26 result.tar.gz
[2025-11-26 16:26:19] -rw-------. 1 boinc boinc       662 Nov 26 16:26 SbwKDmm2Gg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmwSHKDmLpzEMm.diag
[2025-11-26 16:26:19] -rw-r--r--. 1 boinc boinc      8833 Nov 26 16:26 runtime_log.err
[2025-11-26 16:26:19] -rw-r--r--. 1 boinc boinc     21519 Nov 26 16:26 stderr.txt
[2025-11-26 16:26:19] HITS file was successfully produced:
[2025-11-26 16:26:19] -rw-------. 1 boinc boinc 910673416 Nov 26 16:22 shared/HITS.pool.root.1
[2025-11-26 16:26:19]  *** Contents of shared directory: ***
[2025-11-26 16:26:19] total 1302304
[2025-11-26 16:26:19] -rw-r--r--. 2 boinc boinc 407832127 Nov 25 15:32 ATLAS.root_0
[2025-11-26 16:26:19] -rw-r--r--. 2 boinc boinc     15847 Nov 25 15:32 start_atlas.sh
[2025-11-26 16:26:19] -rw-r--r--. 2 boinc boinc    590101 Nov 25 15:32 input.tar.gz
[2025-11-26 16:26:19] -rw-------. 1 boinc boinc 910673416 Nov 26 16:22 HITS.pool.root.1
[2025-11-26 16:26:19] -rw-------. 1 boinc boinc  14438400 Nov 26 16:26 result.tar.gz
16:26:21 (1567): run_atlas exited; CPU time 334445.873715
16:26:21 (1567): called boinc_finish(0)

</stderr_txt>
]]>

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