Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
03:20:37 (2941575): wrapper (7.7.26015): starting
03:20:37 (2941575): wrapper: running run_atlas (--nthreads 12)
[2025-11-24 03:20:37] Arguments: --nthreads 12
[2025-11-24 03:20:37] Threads: 12
[2025-11-24 03:20:37] Checking for CVMFS
[2025-11-24 03:20:37] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 03:20:38] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 03:20:38] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 03:20:39] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 03:20:39] 2.11.5.0 2081521 25394 231952 153243 2 428 40321440 45568001 12760 130560 0 161355200 99.792 97863689 18836 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-11-24 03:20:39] CVMFS is ok
[2025-11-24 03:20:39] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 03:20:39] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 03:20:39] Further information can be found at the LHC@home message board.
[2025-11-24 03:20:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 03:20:39] Checking for apptainer binary...
[2025-11-24 03:20:39] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 03:20:39] Running /usr/bin/apptainer --version
[2025-11-24 03:20:39] apptainer version 1.4.1-1.el9
[2025-11-24 03:20:39] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 03:20:39] wns0041.triumf.lcg
[2025-11-24 03:20:39] apptainer works
[2025-11-24 03:20:39] Set ATHENA_PROC_NUMBER=12
[2025-11-24 03:20:39] Set ATHENA_CORE_NUMBER=12
[2025-11-24 03:20:39] Starting ATLAS job with PandaID=6895375900
[2025-11-24 03:20:39] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 03:28:12]  *** The last 200 lines of the pilot log: ***
[2025-11-24 03:28:12] 2025-11-24 11:27:20,514 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-24 03:28:12] 2025-11-24 11:27:20,515 | WARNING  | wrong length of table data, x=[1763983336.0, 1763983397.0, 1763983458.0], y=[26663.0, 601366.0, 231435.0] (must be same and length>=4)
[2025-11-24 03:28:12] 2025-11-24 11:27:20,516 | INFO     | could have reported an average CPU frequency of 1233 MHz (4 samples)
[2025-11-24 03:28:12] 2025-11-24 11:27:20,516 | INFO     | ..............................
[2025-11-24 03:28:12] 2025-11-24 11:27:20,516 | INFO     | . Timing measurements:
[2025-11-24 03:28:12] 2025-11-24 11:27:20,516 | INFO     | . get job = 0 s
[2025-11-24 03:28:12] 2025-11-24 11:27:20,517 | INFO     | . initial setup = 3 s
[2025-11-24 03:28:12] 2025-11-24 11:27:20,517 | INFO     | . payload setup = 16 s
[2025-11-24 03:28:12] 2025-11-24 11:27:20,517 | INFO     | . stage-in = 0 s
[2025-11-24 03:28:12] 2025-11-24 11:27:20,517 | INFO     | . payload execution = 182 s
[2025-11-24 03:28:12] 2025-11-24 11:27:20,517 | INFO     | . stage-out = 0 s
[2025-11-24 03:28:12] 2025-11-24 11:27:20,517 | INFO     | . log creation = 0 s
[2025-11-24 03:28:12] 2025-11-24 11:27:20,517 | INFO     | ..............................
[2025-11-24 03:28:12] 2025-11-24 11:27:20,517 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-24 03:28:12] 2025-11-24 11:27:20,518 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6895375900/pilotlog.txt
[2025-11-24 03:28:12] 2025-11-24 11:27:20,559 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-24 03:28:12] - Log from pilotlog.txt -
[2025-11-24 03:28:12] 2025-11-24 11:27:20,512 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6895375900/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 03:28:12] 2025-11-24 11:27:20,513 | INFO     | extracted standard info from prmon json
[2025-11-24 03:28:12] 2025-11-24 11:27:20,513 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 03:28:12] 2025-11-24 11:27:20,513 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 03:28:12] 2025-11-24 11:27:20,514 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-24 03:28:12] 2025-11-24 11:27:20,514 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-24 03:28:12] 2025-11-24 11:27:20,515 | WARNING  | wrong length of table data, x=[1763983336.0, 1763983397.0, 1763983458.0], y=[26663.0, 601366.0, 231435.0] (must be same and length>=4)
[2025-11-24 03:28:12] 2025-11-24 11:27:20,516 | INFO     | could have reported an average CPU frequency of 1233 MHz (4 samples)
[2025-11-24 03:28:12] 2025-11-24 11:27:20,516 | INFO     | ..............................
[2025-11-24 03:28:12] 2025-11-24 11:27:20,516 | INFO     | . Timing measurements:
[2025-11-24 03:28:12] 2025-11-24 11:27:20,516 | INFO     | . get job = 0 s
[2025-11-24 03:28:12] 2025-11-24 11:27:20,517 | INFO     | . initial setup = 3 s
[2025-11-24 03:28:12] 2025-11-24 11:27:20,517 | INFO     | . payload setup = 16 s
[2025-11-24 03:28:12] 2025-11-24 11:27:20,517 | INFO     | . stage-in = 0 s
[2025-11-24 03:28:12] 2025-11-24 11:27:20,517 | INFO     | . payload execution = 182 s
[2025-11-24 03:28:12] 2025-11-24 11:27:20,517 | INFO     | . stage-out = 0 s
[2025-11-24 03:28:12] 2025-11-24 11:27:20,517 | INFO     | . log creation = 0 s
[2025-11-24 03:28:12] 2025-11-24 11:27:20,517 | INFO     | ..............................
[2025-11-24 03:28:12] 2025-11-24 11:27:20,517 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-24 03:28:12] 2025-11-24 11:27:20,518 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6895375900/pilotlog.txt
[2025-11-24 03:28:12] 2025-11-24 11:27:20,559 | WARNING  | 
[2025-11-24 03:28:12] [begin log extracts]
[2025-11-24 03:28:12] - Log from pilotlog.txt -
[2025-11-24 03:28:12] 2025-11-24 11:27:20,512 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6895375900/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 03:28:12] 2025-11-24 11:27:20,513 | INFO     | extracted standard info from prmon json
[2025-11-24 03:28:12] 2025-11-24 11:27:20,513 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 03:28:12] 2025-11-24 11:27:20,513 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 03:28:12] 2025-11-24 11:27:20,514 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-24 03:28:12] 2025-11-24 11:27:20,514 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-24 03:28:12] 2025-11-24 11:27:20,515 | WARNING  | wrong length of table data, x=[1763983336.0, 1763983397.0, 1763983458.0], y=[26663.0, 601366.0, 231435.0] (must be same and length>=4)
[2025-11-24 03:28:12] 2025-11-24 11:27:20,516 | INFO     | could have reported an average CPU frequency of 1233 MHz (4 samples)
[2025-11-24 03:28:12] 2025-11-24 11:27:20,516 | INFO     | ..............................
[2025-11-24 03:28:12] 2025-11-24 11:27:20,516 | INFO     | . Timing measurements:
[2025-11-24 03:28:12] 2025-11-24 11:27:20,516 | INFO     | . get job = 0 s
[2025-11-24 03:28:12] 2025-11-24 11:27:20,517 | INFO     | . initial setup = 3 s
[2025-11-24 03:28:12] 2025-11-24 11:27:20,517 | INFO     | . payload setup = 16 s
[2025-11-24 03:28:12] 2025-11-24 11:27:20,517 | INFO     | . stage-in = 0 s
[2025-11-24 03:28:12] 2025-11-24 11:27:20,517 | INFO     | . payload execution = 182 s
[2025-11-24 03:28:12] 2025-11-24 11:27:20,517 | INFO     | . stage-out = 0 s
[2025-11-24 03:28:12] 2025-11-24 11:27:20,517 | INFO     | . log creation = 0 s
[2025-11-24 03:28:12] 2025-11-24 11:27:20,517 | INFO     | ..............................
[2025-11-24 03:28:12] 2025-11-24 11:27:20,517 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-24 03:28:12] 2025-11-24 11:27:20,518 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6895375900/pilotlog.txt
[2025-11-24 03:28:12] [end log extracts]
[2025-11-24 03:28:12] 2025-11-24 11:27:20,560 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-24 03:28:12] 2025-11-24 11:27:20,561 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-24 03:28:12] 2025-11-24 11:27:20,931 | INFO     | 
[2025-11-24 03:28:12] 2025-11-24 11:27:20,931 | INFO     | job summary report
[2025-11-24 03:28:12] 2025-11-24 11:27:20,931 | INFO     | --------------------------------------------------
[2025-11-24 03:28:12] 2025-11-24 11:27:20,932 | INFO     | PanDA job id: 6895375900
[2025-11-24 03:28:12] 2025-11-24 11:27:20,932 | INFO     | task id: 47556137
[2025-11-24 03:28:12] 2025-11-24 11:27:20,932 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-24 03:24:56,969 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-24 03:28:12] 2025-11-24 11:27:20,936 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-24 03:28:12] 2025-11-24 11:27:20,936 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 03:28:12] 2025-11-24 11:27:20,936 | INFO     | pilot state: failed 
[2025-11-24 03:28:12] 2025-11-24 11:27:20,937 | INFO     | transexitcode: 65
[2025-11-24 03:28:12] 2025-11-24 11:27:20,937 | INFO     | exeerrorcode: 65
[2025-11-24 03:28:12] 2025-11-24 11:27:20,937 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2025-11-24 03:28:12] 2025-11-24 11:27:20,937 | INFO     | exitcode: 65
[2025-11-24 03:28:12] 2025-11-24 11:27:20,937 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2025-11-24 03:28:12] 2025-11-24 11:27:20,937 | INFO     | cpuconsumptiontime: 86 s
[2025-11-24 03:28:12] 2025-11-24 11:27:20,937 | INFO     | nevents: 0
[2025-11-24 03:28:12] 2025-11-24 11:27:20,937 | INFO     | neventsw: 0
[2025-11-24 03:28:12] 2025-11-24 11:27:20,937 | INFO     | pid: 2954504
[2025-11-24 03:28:12] 2025-11-24 11:27:20,938 | INFO     | pgrp: 2954504
[2025-11-24 03:28:12] 2025-11-24 11:27:20,938 | INFO     | corecount: 12
[2025-11-24 03:28:12] 2025-11-24 11:27:20,938 | INFO     | event service: False
[2025-11-24 03:28:12] 2025-11-24 11:27:20,938 | INFO     | sizes: {0: 2298626, 1: 2298825, 2: 2298825, 12: 2298853, 15: 2299143, 23: 2299171, 202: 2324781, 203: 2324757, 204: 2329103, 339: 2329269}
[2025-11-24 03:28:12] 2025-11-24 11:27:20,938 | INFO     | --------------------------------------------------
[2025-11-24 03:28:12] 2025-11-24 11:27:20,938 | INFO     | 
[2025-11-24 03:28:12] 2025-11-24 11:27:20,938 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-24 03:28:12] 2025-11-24 11:27:20,990 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 03:28:12] 2025-11-24 11:27:20,990 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 03:28:12] 2025-11-24 11:27:20,990 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 03:28:12] 2025-11-24 11:27:20,990 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 03:28:12] 2025-11-24 11:27:20,990 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 03:28:12] 2025-11-24 11:27:20,990 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 03:28:12] 2025-11-24 11:27:20,991 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 03:28:12] 2025-11-24 11:27:20,991 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 03:28:12] 2025-11-24 11:27:20,991 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 03:28:12] 2025-11-24 11:27:20,991 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 03:28:12] 2025-11-24 11:27:20,991 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 03:28:12] 2025-11-24 11:27:20,991 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 03:28:12] 2025-11-24 11:27:20,991 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 03:28:12] 2025-11-24 11:27:20,991 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 03:28:12] 2025-11-24 11:27:20,991 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 03:28:12] 2025-11-24 11:27:20,992 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 03:28:12] 2025-11-24 11:27:20,992 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 03:28:12] 2025-11-24 11:27:20,992 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 03:28:12] 2025-11-24 11:27:20,992 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 03:28:12] 2025-11-24 11:27:20,992 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 03:28:12] 2025-11-24 11:27:20,992 | INFO     | job 6895375900 has completed (purged errors)
[2025-11-24 03:28:12] 2025-11-24 11:27:20,992 | INFO     | overall cleanup function is called
[2025-11-24 03:28:12] 2025-11-24 11:27:22,001 | INFO     | --- collectZombieJob: --- 10, [2954504]
[2025-11-24 03:28:12] 2025-11-24 11:27:22,001 | INFO     | zombie collector waiting for pid 2954504
[2025-11-24 03:28:12] 2025-11-24 11:27:22,002 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 03:28:12] 2025-11-24 11:27:22,002 | INFO     | collected zombie processes
[2025-11-24 03:28:12] 2025-11-24 11:27:22,002 | INFO     | will attempt to kill all subprocesses of pid=2954504
[2025-11-24 03:28:12] 2025-11-24 11:27:22,569 | INFO     | process IDs to be killed: [2954504] (in reverse order)
[2025-11-24 03:28:12] 2025-11-24 11:27:22,691 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 03:28:12] 2025-11-24 11:27:22,691 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 03:28:12] 2025-11-24 11:27:22,704 | INFO     | did not find any defunct processes belonging to 2954504
[2025-11-24 03:28:12] 2025-11-24 11:27:22,720 | INFO     | did not find any defunct processes belonging to 2954504
[2025-11-24 03:28:12] 2025-11-24 11:27:22,722 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 03:28:12] 2025-11-24 11:27:22,723 | INFO     | ready for new job
[2025-11-24 03:28:12] 2025-11-24 11:27:22,723 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 03:28:12] 2025-11-24 11:27:22,725 | INFO     | ***************************************
[2025-11-24 03:28:12] 2025-11-24 11:27:22,726 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 03:28:12] 2025-11-24 11:27:22,726 | INFO     | ***************************************
[2025-11-24 03:28:12] 2025-11-24 11:27:22,738 | INFO     | 
[2025-11-24 03:28:12] 2025-11-24 11:27:22,754 | INFO     | architecture information:
[2025-11-24 03:28:12] 2025-11-24 11:27:22,774 | INFO     | executing command: cat /etc/os-release
[2025-11-24 03:28:12] 2025-11-24 11:27:22,818 | INFO     | cat /etc/os-release:
[2025-11-24 03:28:12] NAME="CentOS Linux"
[2025-11-24 03:28:12] VERSION="7 (Core)"
[2025-11-24 03:28:12] ID="centos"
[2025-11-24 03:28:12] ID_LIKE="rhel fedora"
[2025-11-24 03:28:12] VERSION_ID="7"
[2025-11-24 03:28:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 03:28:12] ANSI_COLOR="0;31"
[2025-11-24 03:28:12] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 03:28:12] HOME_URL="https://www.centos.org/"
[2025-11-24 03:28:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 03:28:12] 
[2025-11-24 03:28:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 03:28:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 03:28:12] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 03:28:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 03:28:12] 
[2025-11-24 03:28:12] 2025-11-24 11:27:22,819 | INFO     | ***************************************
[2025-11-24 03:28:12] 2025-11-24 11:27:23,322 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-24 03:28:12] 2025-11-24 11:27:23,353 | INFO     | sufficient remaining disk space (1803781406720 B)
[2025-11-24 03:28:12] 2025-11-24 11:27:23,354 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 03:28:12] 2025-11-24 11:27:23,354 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 03:28:12] 2025-11-24 11:27:23,354 | INFO     | update_server=False
[2025-11-24 03:28:12] 2025-11-24 11:27:23,355 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 03:28:12] 2025-11-24 11:27:23,413 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 03:28:12] 2025-11-24 11:27:23,413 | INFO     | aborting loop
[2025-11-24 03:28:12] 2025-11-24 11:27:23,422 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 03:28:12] 2025-11-24 11:27:23,932 | INFO     | all data control threads have been joined
[2025-11-24 03:28:12] 2025-11-24 11:27:24,127 | INFO     | all job control threads have been joined
[2025-11-24 03:28:12] 2025-11-24 11:27:24,131 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 03:28:12] 2025-11-24 11:27:24,365 | INFO     | [job] retrieve thread has finished
[2025-11-24 03:28:12] 2025-11-24 11:27:24,372 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 03:28:12] 2025-11-24 11:27:24,419 | INFO     | [job] job monitor thread has finished
[2025-11-24 03:28:12] 2025-11-24 11:27:24,484 | INFO     | [payload] failed_post thread has finished
[2025-11-24 03:28:12] 2025-11-24 11:27:24,697 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 03:28:12] 2025-11-24 11:27:24,717 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 03:28:12] 2025-11-24 11:27:24,732 | INFO     | [data] copytool_in thread has finished
[2025-11-24 03:28:12] 2025-11-24 11:27:24,822 | INFO     | all payload control threads have been joined
[2025-11-24 03:28:12] 2025-11-24 11:27:24,938 | INFO     | [data] control thread has finished
[2025-11-24 03:28:12] 2025-11-24 11:27:25,133 | INFO     | [job] control thread has finished
[2025-11-24 03:28:12] 2025-11-24 11:27:25,269 | INFO     | [payload] validate_post thread has finished
[2025-11-24 03:28:12] 2025-11-24 11:27:25,371 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 03:28:12] 2025-11-24 11:27:25,484 | INFO     | [job] validate thread has finished
[2025-11-24 03:28:12] 2025-11-24 11:27:25,716 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 03:28:12] 2025-11-24 11:27:25,828 | INFO     | [payload] control thread has finished
[2025-11-24 03:28:12] 2025-11-24 11:27:26,138 | INFO     | [data] copytool_out thread has finished
[2025-11-24 03:28:12] 2025-11-24 11:27:26,722 | INFO     | [job] queue monitor thread has finished
[2025-11-24 03:28:12] 2025-11-24 11:27:27,431 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 03:28:12] 2025-11-24 11:27:53,830 | INFO     | PID=2945253 has CPU usage=2.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-24 03:28:12] 2025-11-24 11:27:53,830 | INFO     | .. there are 20 such processes running
[2025-11-24 03:28:12] 2025-11-24 11:27:53,831 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 03:28:12] 2025-11-24 11:27:53,831 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 03:28:12] 2025-11-24 11:27:53,831 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 03:28:12] 2025-11-24 11:28:05,485 | INFO     | [monitor] cgroup control has ended
[2025-11-24 03:28:12] 2025-11-24 11:28:07,244 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140366106179392)>', '<ExcThread(monitor, started 140365420025600)>']
[2025-11-24 03:28:12] 2025-11-24 11:28:07,935 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 03:28:12] 2025-11-24 11:28:07,935 | INFO     | [monitor] control thread has ended
[2025-11-24 03:28:12] 2025-11-24 11:28:12,270 | INFO     | all workflow threads have been joined
[2025-11-24 03:28:12] 2025-11-24 11:28:12,270 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 03:28:12] 2025-11-24 11:28:12,271 | INFO     | traces error code: 0
[2025-11-24 03:28:12] 2025-11-24 11:28:12,271 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 03:28:12] 2025-11-24 11:28:12,475 [wrapper] ==== pilot stdout END ====
[2025-11-24 03:28:12] 2025-11-24 11:28:12,479 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 03:28:12] 2025-11-24 11:28:12,482 [wrapper] pilotpid: 2945253
[2025-11-24 03:28:12] 2025-11-24 11:28:12,485 [wrapper] Pilot exit status: 0
[2025-11-24 03:28:12] 2025-11-24 11:28:12,602 [wrapper] pandaids: 6895375900
[2025-11-24 03:28:12] 2025-11-24 11:28:12,748 [wrapper] cleanup supervisor_pilot 2945259 2945254
[2025-11-24 03:28:12] 2025-11-24 11:28:12,754 [wrapper] Test setup, not cleaning
[2025-11-24 03:28:12] 2025-11-24 11:28:12,758 [wrapper] apfmon messages muted
[2025-11-24 03:28:12] 2025-11-24 11:28:12,761 [wrapper] ==== wrapper stdout END ====
[2025-11-24 03:28:12] 2025-11-24 11:28:12,765 [wrapper] ==== wrapper stderr END ====
[2025-11-24 03:28:12]  *** Error codes and diagnostics ***
[2025-11-24 03:28:12]     "exeErrorCode": 65,
[2025-11-24 03:28:12]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2025-11-24 03:28:12]     "pilotErrorCode": 1305,
[2025-11-24 03:28:12]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2025-11-24 03:28:12]  *** Listing of results directory ***
[2025-11-24 03:28:12] total 402788
[2025-11-24 03:28:12] -rw-r--r--. 1 boinc boinc    576529 Nov 23 16:08 pilot3.tar.gz
[2025-11-24 03:28:12] -rw-r--r--. 1 boinc boinc      5112 Nov 23 16:17 queuedata.json
[2025-11-24 03:28:12] -rwx------. 1 boinc boinc     36292 Nov 23 16:17 runpilot2-wrapper.sh
[2025-11-24 03:28:12] -rw-r--r--. 1 boinc boinc       100 Nov 24 03:20 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 03:28:12] -rwxr-xr-x. 1 boinc boinc      7986 Nov 24 03:20 run_atlas
[2025-11-24 03:28:12] -rw-r--r--. 1 boinc boinc       105 Nov 24 03:20 job.xml
[2025-11-24 03:28:12] -rw-r--r--. 1 boinc boinc      6595 Nov 24 03:20 init_data.xml
[2025-11-24 03:28:12] -rw-r--r--. 2 boinc boinc 408209899 Nov 24 03:20 EVNT.47483658._000961.pool.root.1
[2025-11-24 03:28:12] -rw-r--r--. 2 boinc boinc     15847 Nov 24 03:20 start_atlas.sh
[2025-11-24 03:28:12] drwxrwx--x. 2 boinc boinc      4096 Nov 24 03:20 shared
[2025-11-24 03:28:12] -rw-r--r--. 2 boinc boinc    590107 Nov 24 03:20 input.tar.gz
[2025-11-24 03:28:12] -rw-r--r--. 1 boinc boinc         0 Nov 24 03:20 boinc_lockfile
[2025-11-24 03:28:12] -rw-r--r--. 1 boinc boinc      2782 Nov 24 03:20 pandaJob.out
[2025-11-24 03:28:12] -rw-------. 1 boinc boinc    989824 Nov 24 03:21 agis_schedconf.cvmfs.json
[2025-11-24 03:28:12] -rw-------. 1 boinc boinc   1526164 Nov 24 03:21 agis_ddmendpoints.agis.ALL.json
[2025-11-24 03:28:12] drwx------. 5 boinc boinc      4096 Nov 24 03:21 pilot3
[2025-11-24 03:28:12] -rw-r--r--. 1 boinc boinc       524 Nov 24 03:24 boinc_task_state.xml
[2025-11-24 03:28:12] -rw-------. 1 boinc boinc      1002 Nov 24 03:25 memory_monitor_summary.json
[2025-11-24 03:28:12] -rw-------. 1 boinc boinc     50212 Nov 24 03:25 log.47556137._009471.job.log.tgz.1
[2025-11-24 03:28:12] -rw-------. 1 boinc boinc        95 Nov 24 03:27 pilot_heartbeat.json
[2025-11-24 03:28:12] -rw-------. 1 boinc boinc     10342 Nov 24 03:27 heartbeat.json
[2025-11-24 03:28:12] -rw-------. 1 boinc boinc      4823 Nov 24 03:28 pilotlog.txt
[2025-11-24 03:28:12] -rw-r--r--. 1 boinc boinc      8192 Nov 24 03:28 boinc_mmap_file
[2025-11-24 03:28:12] -rw-r--r--. 1 boinc boinc        23 Nov 24 03:28 wrapper_checkpoint.txt
[2025-11-24 03:28:12] -rw-------. 1 boinc boinc    114247 Nov 24 03:28 log.47556137._009471.job.log.1
[2025-11-24 03:28:12] -rw-------. 1 boinc boinc       186 Nov 24 03:28 output.list
[2025-11-24 03:28:12] -rw-r--r--. 1 boinc boinc       620 Nov 24 03:28 runtime_log
[2025-11-24 03:28:12] -rw-------. 1 boinc boinc    184320 Nov 24 03:28 result.tar.gz
[2025-11-24 03:28:12] -rw-------. 1 boinc boinc       647 Nov 24 03:28 rxTNDmCSZh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm9qIKDmxd5Tmm.diag
[2025-11-24 03:28:12] -rw-r--r--. 1 boinc boinc      8636 Nov 24 03:28 runtime_log.err
[2025-11-24 03:28:12] -rw-r--r--. 1 boinc boinc     22587 Nov 24 03:28 stderr.txt
[2025-11-24 03:28:12] No HITS result produced
[2025-11-24 03:28:12]  *** Contents of shared directory: ***
[2025-11-24 03:28:12] total 399424
[2025-11-24 03:28:12] -rw-r--r--. 2 boinc boinc 408209899 Nov 24 03:20 ATLAS.root_0
[2025-11-24 03:28:12] -rw-r--r--. 2 boinc boinc     15847 Nov 24 03:20 start_atlas.sh
[2025-11-24 03:28:12] -rw-r--r--. 2 boinc boinc    590107 Nov 24 03:20 input.tar.gz
[2025-11-24 03:28:12] -rw-------. 1 boinc boinc    184320 Nov 24 03:28 result.tar.gz
03:28:14 (2941575): run_atlas exited; CPU time 83.505293
03:28:14 (2941575): called boinc_finish(0)

</stderr_txt>
]]>

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