Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
23:37:18 (6314): wrapper (7.7.26015): starting
23:37:18 (6314): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 23:37:18] Arguments: --nthreads 8
[2025-11-26 23:37:18] Threads: 8
[2025-11-26 23:37:18] Checking for CVMFS
[2025-11-26 23:37:19] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 23:37:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 23:37:19] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 23:37:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 23:37:20] 2.11.2.0 9336 83052 90044 153337 1 85 18178244 25165824 1288 130560 12 24946879 99.889 13900655 1657 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-26 23:37:20] CVMFS is ok
[2025-11-26 23:37:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 23:37:21] Checking for apptainer binary...
[2025-11-26 23:37:21] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 23:37:21] Running /usr/bin/apptainer --version
[2025-11-26 23:37:21] apptainer version 1.3.2-1.el7
[2025-11-26 23:37:21] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 23:37:28] cg-vwn413.simple-grid.lan
[2025-11-26 23:37:28] apptainer works
[2025-11-26 23:37:28] Set ATHENA_PROC_NUMBER=8
[2025-11-26 23:37:28] Set ATHENA_CORE_NUMBER=8
[2025-11-26 23:37:28] Starting ATLAS job with PandaID=6895358860
[2025-11-26 23:37:28] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/10 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 23:03:57]  *** The last 200 lines of the pilot log: ***
[2025-11-27 23:03:57] 2025-11-27 22:02:34,927 | INFO     | time since job start (84074s) is within the limit (172800.0s)
[2025-11-27 23:03:57] 2025-11-27 22:02:36,490 | INFO     | monitor loop #5662: job 0:6895358860 is in state 'finished'
[2025-11-27 23:03:57] 2025-11-27 22:02:36,491 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 23:03:57] 2025-11-27 22:02:36,935 | INFO     | time since job start (84076s) is within the limit (172800.0s)
[2025-11-27 23:03:57] 2025-11-27 22:02:38,943 | INFO     | time since job start (84078s) is within the limit (172800.0s)
[2025-11-27 23:03:57] 2025-11-27 22:02:38,997 | INFO     | monitor loop #5663: job 0:6895358860 is in state 'finished'
[2025-11-27 23:03:57] 2025-11-27 22:02:38,998 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 23:03:57] 2025-11-27 22:02:40,949 | INFO     | time since job start (84080s) is within the limit (172800.0s)
[2025-11-27 23:03:57] 2025-11-27 22:02:41,502 | INFO     | monitor loop #5664: job 0:6895358860 is in state 'finished'
[2025-11-27 23:03:57] 2025-11-27 22:02:41,503 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 23:03:57] 2025-11-27 22:02:42,121 | INFO     | PID=10145 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-27 23:03:57] 2025-11-27 22:02:42,121 | INFO     | .. there are 9 such processes running
[2025-11-27 23:03:57] 2025-11-27 22:02:43,123 | INFO     | time since job start (84083s) is within the limit (172800.0s)
[2025-11-27 23:03:57] 2025-11-27 22:02:43,968 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 23:03:57] 2025-11-27 22:02:43,970 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-27 23:03:57] 2025-11-27 22:02:43,972 | INFO     | using path: /var/lib/boinc/slots/10/PanDA_Pilot-6895358860/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 23:03:57] 2025-11-27 22:02:43,973 | INFO     | extracted standard info from prmon json
[2025-11-27 23:03:57] 2025-11-27 22:02:43,973 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 23:03:57] 2025-11-27 22:02:43,973 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 23:03:57] 2025-11-27 22:02:44,003 | INFO     | fitting pss+swap vs Time
[2025-11-27 23:03:57] 2025-11-27 22:02:44,006 | INFO     | sum of square deviations: 795587823598.4004
[2025-11-27 23:03:57] 2025-11-27 22:02:44,034 | INFO     | monitor loop #5665: job 0:6895358860 is in state 'finished'
[2025-11-27 23:03:57] 2025-11-27 22:02:44,035 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 23:03:57] 2025-11-27 22:02:44,091 | INFO     | sum of deviations: 2893109374432.371
[2025-11-27 23:03:57] 2025-11-27 22:02:44,091 | INFO     | mean x: 1764239126.074507
[2025-11-27 23:03:57] 2025-11-27 22:02:44,092 | INFO     | mean y: 2849331.0452885316
[2025-11-27 23:03:57] 2025-11-27 22:02:44,092 | INFO     | intersect: -6412704807.655324
[2025-11-27 23:03:57] 2025-11-27 22:02:44,093 | INFO     | chi2: 18.210243000620732
[2025-11-27 23:03:57] 2025-11-27 22:02:44,095 | INFO     | sum of square deviations: 786902881492.6053
[2025-11-27 23:03:57] 2025-11-27 22:02:44,149 | INFO     | sum of deviations: 3349431324901.5815
[2025-11-27 23:03:57] 2025-11-27 22:02:44,150 | INFO     | mean x: 1764238973.5784457
[2025-11-27 23:03:57] 2025-11-27 22:02:44,150 | INFO     | mean y: 2857342.774926686
[2025-11-27 23:03:57] 2025-11-27 22:02:44,150 | INFO     | intersect: -7506579236.625106
[2025-11-27 23:03:57] 2025-11-27 22:02:44,151 | INFO     | chi2: 14.974184762232184
[2025-11-27 23:03:57] 2025-11-27 22:02:44,152 | INFO     | current chi2=14.974184762232184 (change=17.770538472651026 %)
[2025-11-27 23:03:57] 2025-11-27 22:02:44,152 | INFO     | right removable region: 1363
[2025-11-27 23:03:57] 2025-11-27 22:02:44,154 | INFO     | sum of square deviations: 786901984182.606
[2025-11-27 23:03:57] 2025-11-27 22:02:44,218 | INFO     | sum of deviations: 2352998627041.916
[2025-11-27 23:03:57] 2025-11-27 22:02:44,219 | INFO     | mean x: 1764239278.5784457
[2025-11-27 23:03:57] 2025-11-27 22:02:44,219 | INFO     | mean y: 2858812.2485337243
[2025-11-27 23:03:57] 2025-11-27 22:02:44,219 | INFO     | intersect: -5272579150.435745
[2025-11-27 23:03:57] 2025-11-27 22:02:44,220 | INFO     | chi2: 14.099266726528278
[2025-11-27 23:03:57] 2025-11-27 22:02:44,221 | INFO     | current chi2=14.099266726528278 (change=22.575076422386697 %)
[2025-11-27 23:03:57] 2025-11-27 22:02:44,221 | INFO     | left removable region: 10
[2025-11-27 23:03:57] 2025-11-27 22:02:44,223 | INFO     | sum of square deviations: 768017206327.7065
[2025-11-27 23:03:57] 2025-11-27 22:02:44,273 | INFO     | sum of deviations: 2479248292272.7993
[2025-11-27 23:03:57] 2025-11-27 22:02:44,273 | INFO     | mean x: 1764239248.0872135
[2025-11-27 23:03:57] 2025-11-27 22:02:44,273 | INFO     | mean y: 2876332.450849963
[2025-11-27 23:03:57] 2025-11-27 22:02:44,273 | INFO     | intersect: -5692291831.678182
[2025-11-27 23:03:57] 2025-11-27 22:02:44,275 | INFO     | chi2: 7.513958081177934
[2025-11-27 23:03:57] 2025-11-27 22:02:44,275 | INFO     | current memory leak: 3.23 B/s (using 1353 data points, chi2=7.51)
[2025-11-27 23:03:57] 2025-11-27 22:02:44,276 | INFO     | could have reported an average CPU frequency of 1999 MHz (46 samples)
[2025-11-27 23:03:57] 2025-11-27 22:02:44,276 | INFO     | ..............................
[2025-11-27 23:03:57] 2025-11-27 22:02:44,277 | INFO     | . Timing measurements:
[2025-11-27 23:03:57] 2025-11-27 22:02:44,277 | INFO     | . get job = 0 s
[2025-11-27 23:03:57] 2025-11-27 22:02:44,277 | INFO     | . initial setup = 4 s
[2025-11-27 23:03:57] 2025-11-27 22:02:44,277 | INFO     | . payload setup = 158 s
[2025-11-27 23:03:57] 2025-11-27 22:02:44,277 | INFO     | . stage-in = 0 s
[2025-11-27 23:03:57] 2025-11-27 22:02:44,277 | INFO     | . payload execution = 83635 s
[2025-11-27 23:03:57] 2025-11-27 22:02:44,277 | INFO     | . stage-out = 7 s
[2025-11-27 23:03:57] 2025-11-27 22:02:44,278 | INFO     | . log creation = 1 s
[2025-11-27 23:03:57] 2025-11-27 22:02:44,278 | INFO     | ..............................
[2025-11-27 23:03:57] 2025-11-27 22:02:44,669 | INFO     | 
[2025-11-27 23:03:57] 2025-11-27 22:02:44,670 | INFO     | job summary report
[2025-11-27 23:03:57] 2025-11-27 22:02:44,670 | INFO     | --------------------------------------------------
[2025-11-27 23:03:57] 2025-11-27 22:02:44,670 | INFO     | PanDA job id: 6895358860
[2025-11-27 23:03:57] 2025-11-27 22:02:44,670 | INFO     | task id: 47556137
[2025-11-27 23:03:57] 2025-11-27 22:02:44,670 | INFO     | errors: (none)
[2025-11-27 23:03:57] 2025-11-27 22:02:44,670 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 23:03:57] 2025-11-27 22:02:44,670 | INFO     | pilot state: finished 
[2025-11-27 23:03:57] 2025-11-27 22:02:44,670 | INFO     | transexitcode: 0
[2025-11-27 23:03:57] 2025-11-27 22:02:44,670 | INFO     | exeerrorcode: 0
[2025-11-27 23:03:57] 2025-11-27 22:02:44,670 | INFO     | exeerrordiag: 
[2025-11-27 23:03:57] 2025-11-27 22:02:44,670 | INFO     | exitcode: 0
[2025-11-27 23:03:57] 2025-11-27 22:02:44,671 | INFO     | exitmsg: OK
[2025-11-27 23:03:57] 2025-11-27 22:02:44,671 | INFO     | cpuconsumptiontime: 317321 s
[2025-11-27 23:03:57] 2025-11-27 22:02:44,671 | INFO     | nevents: 1000
[2025-11-27 23:03:57] 2025-11-27 22:02:44,671 | INFO     | neventsw: 0
[2025-11-27 23:03:57] 2025-11-27 22:02:44,671 | INFO     | pid: 16687
[2025-11-27 23:03:57] 2025-11-27 22:02:44,671 | INFO     | pgrp: 16687
[2025-11-27 23:03:57] 2025-11-27 22:02:44,671 | INFO     | corecount: 8
[2025-11-27 23:03:57] 2025-11-27 22:02:44,671 | INFO     | event service: False
[2025-11-27 23:03:57] 2025-11-27 22:02:44,671 | INFO     | sizes: {0: 2283480, 1: 2284337, 2: 2284365, 12: 2284365, 23: 2284393, 34: 2284421, 45: 2284577, 55: 2284605, 66: 2284633, 77: 2284661, 88: 2284717, 91: 2285287, 98
[2025-11-27 23:03:57] 2025-11-27 22:02:44,671 | INFO     | --------------------------------------------------
[2025-11-27 23:03:57] 2025-11-27 22:02:44,671 | INFO     | 
[2025-11-27 23:03:57] 2025-11-27 22:02:44,672 | INFO     | executing command: ls -lF /var/lib/boinc/slots/10
[2025-11-27 23:03:57] 2025-11-27 22:02:45,139 | INFO     | time since job start (84085s) is within the limit (172800.0s)
[2025-11-27 23:03:57] 2025-11-27 22:02:45,308 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 23:03:57] 2025-11-27 22:02:45,308 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 23:03:57] 2025-11-27 22:02:45,308 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 23:03:57] 2025-11-27 22:02:45,308 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 23:03:57] 2025-11-27 22:02:45,308 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 23:03:57] 2025-11-27 22:02:45,308 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 23:03:57] 2025-11-27 22:02:45,308 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 23:03:57] 2025-11-27 22:02:45,309 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 23:03:57] 2025-11-27 22:02:45,309 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 23:03:57] 2025-11-27 22:02:45,309 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 23:03:57] 2025-11-27 22:02:45,309 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 23:03:57] 2025-11-27 22:02:45,309 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 23:03:57] 2025-11-27 22:02:45,309 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 23:03:57] 2025-11-27 22:02:45,309 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 23:03:57] 2025-11-27 22:02:45,309 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 23:03:57] 2025-11-27 22:02:45,309 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 23:03:57] 2025-11-27 22:02:45,309 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 23:03:57] 2025-11-27 22:02:45,309 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 23:03:57] 2025-11-27 22:02:45,309 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 23:03:57] 2025-11-27 22:02:45,310 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 23:03:57] 2025-11-27 22:02:45,310 | INFO     | job 6895358860 has completed (purged errors)
[2025-11-27 23:03:57] 2025-11-27 22:02:45,310 | INFO     | overall cleanup function is called
[2025-11-27 23:03:57] 2025-11-27 22:02:46,332 | INFO     | --- collectZombieJob: --- 10, [16687]
[2025-11-27 23:03:57] 2025-11-27 22:02:46,333 | INFO     | zombie collector waiting for pid 16687
[2025-11-27 23:03:57] 2025-11-27 22:02:46,333 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 23:03:57] 2025-11-27 22:02:46,333 | INFO     | collected zombie processes
[2025-11-27 23:03:57] 2025-11-27 22:02:46,333 | INFO     | will attempt to kill all subprocesses of pid=16687
[2025-11-27 23:03:57] 2025-11-27 22:02:46,435 | INFO     | process IDs to be killed: [16687] (in reverse order)
[2025-11-27 23:03:57] 2025-11-27 22:02:47,294 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 23:03:57] 2025-11-27 22:02:47,294 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 23:03:57] 2025-11-27 22:02:47,297 | INFO     | did not find any defunct processes belonging to 16687
[2025-11-27 23:03:57] 2025-11-27 22:02:47,300 | INFO     | did not find any defunct processes belonging to 16687
[2025-11-27 23:03:57] 2025-11-27 22:02:47,367 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 23:03:57] 2025-11-27 22:02:47,368 | INFO     | ready for new job
[2025-11-27 23:03:57] 2025-11-27 22:02:47,368 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 23:03:57] 2025-11-27 22:02:47,373 | INFO     | ***************************************
[2025-11-27 23:03:57] 2025-11-27 22:02:47,374 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 23:03:57] 2025-11-27 22:02:47,374 | INFO     | ***************************************
[2025-11-27 23:03:57] 2025-11-27 22:02:47,374 | INFO     | 
[2025-11-27 23:03:57] 2025-11-27 22:02:47,374 | INFO     | pilot is running in a VM
[2025-11-27 23:03:57] 2025-11-27 22:02:47,375 | INFO     | architecture information:
[2025-11-27 23:03:57] 2025-11-27 22:02:47,386 | INFO     | executing command: cat /etc/os-release
[2025-11-27 23:03:57] 2025-11-27 22:02:47,668 | INFO     | cat /etc/os-release:
[2025-11-27 23:03:57] NAME="CentOS Linux"
[2025-11-27 23:03:57] VERSION="7 (Core)"
[2025-11-27 23:03:57] ID="centos"
[2025-11-27 23:03:57] ID_LIKE="rhel fedora"
[2025-11-27 23:03:57] VERSION_ID="7"
[2025-11-27 23:03:57] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 23:03:57] ANSI_COLOR="0;31"
[2025-11-27 23:03:57] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 23:03:57] HOME_URL="https://www.centos.org/"
[2025-11-27 23:03:57] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 23:03:57] 
[2025-11-27 23:03:57] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 23:03:57] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 23:03:57] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 23:03:57] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 23:03:57] 
[2025-11-27 23:03:57] 2025-11-27 22:02:47,668 | INFO     | ***************************************
[2025-11-27 23:03:57] 2025-11-27 22:02:48,172 | INFO     | executing command: df -mP /var/lib/boinc/slots/10
[2025-11-27 23:03:57] 2025-11-27 22:02:48,409 | INFO     | sufficient remaining disk space (494732836864 B)
[2025-11-27 23:03:57] 2025-11-27 22:02:48,410 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 23:03:57] 2025-11-27 22:02:48,410 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 23:03:57] 2025-11-27 22:02:48,410 | INFO     | update_server=False
[2025-11-27 23:03:57] 2025-11-27 22:02:48,410 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 23:03:57] 2025-11-27 22:02:48,410 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 23:03:57] 2025-11-27 22:02:48,411 | INFO     | aborting loop
[2025-11-27 23:03:57] 2025-11-27 22:02:48,411 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 23:03:57] 2025-11-27 22:02:48,412 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 23:03:57] 2025-11-27 22:02:49,003 | INFO     | all job control threads have been joined
[2025-11-27 23:03:57] 2025-11-27 22:02:49,112 | INFO     | all data control threads have been joined
[2025-11-27 23:03:57] 2025-11-27 22:02:49,245 | INFO     | all payload control threads have been joined
[2025-11-27 23:03:57] 2025-11-27 22:02:49,417 | INFO     | [job] retrieve thread has finished
[2025-11-27 23:03:57] 2025-11-27 22:02:49,417 | INFO     | [job] job monitor thread has finished
[2025-11-27 23:03:57] 2025-11-27 22:02:49,424 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 23:03:57] 2025-11-27 22:02:49,570 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 23:03:57] 2025-11-27 22:02:49,571 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 23:03:57] 2025-11-27 22:02:49,726 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 23:03:57] 2025-11-27 22:02:49,772 | INFO     | [payload] failed_post thread has finished
[2025-11-27 23:03:57] 2025-11-27 22:02:49,853 | INFO     | [job] validate thread has finished
[2025-11-27 23:03:57] 2025-11-27 22:02:49,983 | INFO     | [data] copytool_in thread has finished
[2025-11-27 23:03:57] 2025-11-27 22:02:50,009 | INFO     | [job] control thread has finished
[2025-11-27 23:03:57] 2025-11-27 22:02:50,118 | INFO     | [data] control thread has finished
[2025-11-27 23:03:57] 2025-11-27 22:02:50,251 | INFO     | [payload] control thread has finished
[2025-11-27 23:03:57] 2025-11-27 22:02:50,298 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 23:03:57] 2025-11-27 22:02:50,418 | INFO     | [data] copytool_out thread has finished
[2025-11-27 23:03:57] 2025-11-27 22:02:50,430 | INFO     | [job] queue monitor thread has finished
[2025-11-27 23:03:57] 2025-11-27 22:02:50,780 | INFO     | [payload] validate_post thread has finished
[2025-11-27 23:03:57] 2025-11-27 22:02:52,421 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 23:03:57] 2025-11-27 22:03:18,290 | INFO     | PID=10145 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-27 23:03:57] 2025-11-27 22:03:18,291 | INFO     | .. there are 9 such processes running
[2025-11-27 23:03:57] 2025-11-27 22:03:18,291 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 23:03:57] 2025-11-27 22:03:18,291 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 23:03:57] 2025-11-27 22:03:18,291 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 23:03:57] 2025-11-27 22:03:46,415 | INFO     | [monitor] cgroup control has ended
[2025-11-27 23:03:57] 2025-11-27 22:03:48,016 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139672769087296)>', '<ExcThread(monitor, started 139672151889664)>']
[2025-11-27 23:03:57] 2025-11-27 22:03:48,468 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 23:03:57] 2025-11-27 22:03:48,469 | INFO     | [monitor] control thread has ended
[2025-11-27 23:03:57] 2025-11-27 22:03:53,042 | INFO     | all workflow threads have been joined
[2025-11-27 23:03:57] 2025-11-27 22:03:53,043 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 23:03:57] 2025-11-27 22:03:53,043 | INFO     | traces error code: 0
[2025-11-27 23:03:57] 2025-11-27 22:03:53,043 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 23:03:57] 2025-11-27 22:03:53,220 [wrapper] ==== pilot stdout END ====
[2025-11-27 23:03:57] 2025-11-27 22:03:53,223 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 23:03:57] 2025-11-27 22:03:53,226 [wrapper] pilotpid: 10145
[2025-11-27 23:03:57] 2025-11-27 22:03:53,229 [wrapper] Pilot exit status: 0
[2025-11-27 23:03:57] 2025-11-27 22:03:53,569 [wrapper] pandaids: 6895358860
[2025-11-27 23:03:57] 2025-11-27 22:03:54,430 [wrapper] cleanup supervisor_pilot 19896 10146
[2025-11-27 23:03:57] 2025-11-27 22:03:54,479 [wrapper] Test setup, not cleaning
[2025-11-27 23:03:57] 2025-11-27 22:03:54,529 [wrapper] apfmon messages muted
[2025-11-27 23:03:57] 2025-11-27 22:03:54,615 [wrapper] ==== wrapper stdout END ====
[2025-11-27 23:03:57] 2025-11-27 22:03:54,673 [wrapper] ==== wrapper stderr END ====
[2025-11-27 23:03:57]  *** Error codes and diagnostics ***
[2025-11-27 23:03:57]     "exeErrorCode": 0,
[2025-11-27 23:03:57]     "exeErrorDiag": "",
[2025-11-27 23:03:57]     "pilotErrorCode": 0,
[2025-11-27 23:03:57]     "pilotErrorDiag": "",
[2025-11-27 23:03:57]  *** Listing of results directory ***
[2025-11-27 23:03:57] total 1330300
[2025-11-27 23:03:57] -rw-r--r--. 1 boinc boinc    576529 Nov 23 13:50 pilot3.tar.gz
[2025-11-27 23:03:57] -rwx------. 1 boinc boinc     36292 Nov 23 14:06 runpilot2-wrapper.sh
[2025-11-27 23:03:57] -rw-r--r--. 1 boinc boinc      5112 Nov 23 14:06 queuedata.json
[2025-11-27 23:03:57] -rw-r--r--. 1 boinc boinc       100 Nov 26 23:37 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 23:03:57] -rwxr-xr-x. 1 boinc boinc      7986 Nov 26 23:37 run_atlas
[2025-11-27 23:03:57] -rw-r--r--. 1 boinc boinc       105 Nov 26 23:37 job.xml
[2025-11-27 23:03:57] -rw-r--r--. 2 boinc boinc 409272853 Nov 26 23:37 EVNT.47483658._000741.pool.root.1
[2025-11-27 23:03:57] -rw-r--r--. 2 boinc boinc     15847 Nov 26 23:37 start_atlas.sh
[2025-11-27 23:03:57] drwxrwx--x. 2 boinc boinc        68 Nov 26 23:37 shared
[2025-11-27 23:03:57] -rw-r--r--. 2 boinc boinc    590102 Nov 26 23:37 input.tar.gz
[2025-11-27 23:03:57] -rw-r--r--. 1 boinc boinc      6393 Nov 26 23:37 init_data.xml
[2025-11-27 23:03:57] -rw-r--r--. 1 boinc boinc         0 Nov 26 23:37 boinc_lockfile
[2025-11-27 23:03:57] -rw-r--r--. 1 boinc boinc      2782 Nov 26 23:37 pandaJob.out
[2025-11-27 23:03:57] -rw-------. 1 boinc boinc    991546 Nov 26 23:41 agis_schedconf.cvmfs.json
[2025-11-27 23:03:57] drwx------. 5 boinc boinc      4096 Nov 26 23:41 pilot3
[2025-11-27 23:03:57] -rw-r--r--. 1 boinc boinc       533 Nov 27 22:38 boinc_task_state.xml
[2025-11-27 23:03:57] -rw-------. 1 boinc boinc 921718940 Nov 27 23:00 HITS.47556137._007361.pool.root.1
[2025-11-27 23:03:57] -rw-------. 1 boinc boinc      1028 Nov 27 23:01 memory_monitor_summary.json
[2025-11-27 23:03:57] -rw-------. 1 boinc boinc   1516240 Nov 27 23:01 agis_ddmendpoints.agis.ALL.json
[2025-11-27 23:03:57] -rw-------. 1 boinc boinc   2443957 Nov 27 23:01 log.47556137._007361.job.log.tgz.1
[2025-11-27 23:03:57] -rw-------. 1 boinc boinc        95 Nov 27 23:02 pilot_heartbeat.json
[2025-11-27 23:03:57] -rw-------. 1 boinc boinc      8622 Nov 27 23:02 heartbeat.json
[2025-11-27 23:03:57] -rw-r--r--. 1 boinc boinc      8192 Nov 27 23:03 boinc_mmap_file
[2025-11-27 23:03:57] -rw-r--r--. 1 boinc boinc        29 Nov 27 23:03 wrapper_checkpoint.txt
[2025-11-27 23:03:57] -rw-------. 1 boinc boinc      4885 Nov 27 23:03 pilotlog.txt
[2025-11-27 23:03:57] -rw-------. 1 boinc boinc  11221680 Nov 27 23:03 log.47556137._007361.job.log.1
[2025-11-27 23:03:57] -rw-------. 1 boinc boinc       353 Nov 27 23:03 output.list
[2025-11-27 23:03:57] -rw-r--r--. 1 boinc boinc       620 Nov 27 23:03 runtime_log
[2025-11-27 23:03:57] -rw-------. 1 boinc boinc  13680640 Nov 27 23:03 result.tar.gz
[2025-11-27 23:03:57] -rw-------. 1 boinc boinc       662 Nov 27 23:03 SjONDmZyOh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm2XIKDmxDRAVo.diag
[2025-11-27 23:03:57] -rw-r--r--. 1 boinc boinc      8833 Nov 27 23:03 runtime_log.err
[2025-11-27 23:03:57] -rw-r--r--. 1 boinc boinc     21502 Nov 27 23:03 stderr.txt
[2025-11-27 23:03:57] HITS file was successfully produced:
[2025-11-27 23:03:57] -rw-------. 1 boinc boinc 921718940 Nov 27 23:00 shared/HITS.pool.root.1
[2025-11-27 23:03:57]  *** Contents of shared directory: ***
[2025-11-27 23:03:57] total 1313760
[2025-11-27 23:03:57] -rw-r--r--. 2 boinc boinc 409272853 Nov 26 23:37 ATLAS.root_0
[2025-11-27 23:03:57] -rw-r--r--. 2 boinc boinc     15847 Nov 26 23:37 start_atlas.sh
[2025-11-27 23:03:57] -rw-r--r--. 2 boinc boinc    590102 Nov 26 23:37 input.tar.gz
[2025-11-27 23:03:57] -rw-------. 1 boinc boinc 921718940 Nov 27 23:00 HITS.pool.root.1
[2025-11-27 23:03:57] -rw-------. 1 boinc boinc  13680640 Nov 27 23:03 result.tar.gz
23:03:59 (6314): run_atlas exited; CPU time 317904.450734
23:03:59 (6314): called boinc_finish(0)

</stderr_txt>
]]>

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