Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
23:15:07 (31495): wrapper (7.7.26015): starting
23:15:07 (31495): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 23:15:07] Arguments: --nthreads 8
[2025-11-26 23:15:07] Threads: 8
[2025-11-26 23:15:07] Checking for CVMFS
[2025-11-26 23:15:07] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 23:15:08] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 23:15:08] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 23:15:10] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 23:15:10] 2.11.2.0 11156 285810 141884 153336 2 75 13147425 25165824 1330 130560 14 141314686 99.878 77872351 2540 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-26 23:15:10] CVMFS is ok
[2025-11-26 23:15:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 23:15:10] Checking for apptainer binary...
[2025-11-26 23:15:10] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 23:15:10] Running /usr/bin/apptainer --version
[2025-11-26 23:15:10] apptainer version 1.3.2-1.el7
[2025-11-26 23:15:10] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 23:15:24] cg-vwn264.simple-grid.lan
[2025-11-26 23:15:24] apptainer works
[2025-11-26 23:15:24] Set ATHENA_PROC_NUMBER=8
[2025-11-26 23:15:24] Set ATHENA_CORE_NUMBER=8
[2025-11-26 23:15:24] Starting ATLAS job with PandaID=6895358838
[2025-11-26 23:15:24] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/27 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 22:29:52]  *** The last 200 lines of the pilot log: ***
[2025-11-27 22:29:52] 2025-11-27 21:29:03,361 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 22:29:52] 2025-11-27 21:29:05,061 | INFO     | time since job start (83393s) is within the limit (172800.0s)
[2025-11-27 22:29:52] 2025-11-27 21:29:05,864 | INFO     | monitor loop #5633: job 0:6895358838 is in state 'finished'
[2025-11-27 22:29:52] 2025-11-27 21:29:05,865 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 22:29:52] 2025-11-27 21:29:07,071 | INFO     | time since job start (83395s) is within the limit (172800.0s)
[2025-11-27 22:29:52] 2025-11-27 21:29:07,072 | INFO     | 83408s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-27 22:29:52] 2025-11-27 21:29:08,376 | INFO     | monitor loop #5634: job 0:6895358838 is in state 'finished'
[2025-11-27 22:29:52] 2025-11-27 21:29:08,377 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 22:29:52] 2025-11-27 21:29:09,084 | INFO     | time since job start (83397s) is within the limit (172800.0s)
[2025-11-27 22:29:52] 2025-11-27 21:29:10,315 | INFO     | PID=2908 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-27 22:29:52] 2025-11-27 21:29:10,316 | INFO     | .. there are 9 such processes running
[2025-11-27 22:29:52] 2025-11-27 21:29:10,881 | INFO     | monitor loop #5635: job 0:6895358838 is in state 'finished'
[2025-11-27 22:29:52] 2025-11-27 21:29:10,882 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 22:29:52] 2025-11-27 21:29:11,320 | INFO     | time since job start (83399s) is within the limit (172800.0s)
[2025-11-27 22:29:52] 2025-11-27 21:29:12,763 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 22:29:52] 2025-11-27 21:29:12,766 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-27 22:29:52] 2025-11-27 21:29:12,768 | INFO     | using path: /var/lib/boinc/slots/27/PanDA_Pilot-6895358838/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 22:29:52] 2025-11-27 21:29:12,769 | INFO     | extracted standard info from prmon json
[2025-11-27 22:29:52] 2025-11-27 21:29:12,769 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 22:29:52] 2025-11-27 21:29:12,769 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 22:29:52] 2025-11-27 21:29:12,798 | INFO     | fitting pss+swap vs Time
[2025-11-27 22:29:52] 2025-11-27 21:29:12,800 | INFO     | sum of square deviations: 774849667034.0652
[2025-11-27 22:29:52] 2025-11-27 21:29:12,866 | INFO     | sum of deviations: 2754673040608.2134
[2025-11-27 22:29:52] 2025-11-27 21:29:12,866 | INFO     | mean x: 1764237452.0714812
[2025-11-27 22:29:52] 2025-11-27 21:29:12,866 | INFO     | mean y: 2844037.997789241
[2025-11-27 22:29:52] 2025-11-27 21:29:12,866 | INFO     | intersect: -6269207887.964999
[2025-11-27 22:29:52] 2025-11-27 21:29:12,868 | INFO     | chi2: 19.37110814342536
[2025-11-27 22:29:52] 2025-11-27 21:29:12,870 | INFO     | sum of square deviations: 766316592358.3047
[2025-11-27 22:29:52] 2025-11-27 21:29:12,955 | INFO     | sum of deviations: 3205534308972.7285
[2025-11-27 22:29:52] 2025-11-27 21:29:12,956 | INFO     | mean x: 1764237299.5754437
[2025-11-27 22:29:52] 2025-11-27 21:29:12,956 | INFO     | mean y: 2852094.7869822485
[2025-11-27 22:29:52] 2025-11-27 21:29:12,956 | INFO     | intersect: -7377026207.931847
[2025-11-27 22:29:52] 2025-11-27 21:29:12,958 | INFO     | chi2: 16.154144711100972
[2025-11-27 22:29:52] 2025-11-27 21:29:12,958 | INFO     | current chi2=16.154144711100972 (change=16.607018083352344 %)
[2025-11-27 22:29:52] 2025-11-27 21:29:12,958 | INFO     | right removable region: 1351
[2025-11-27 22:29:52] 2025-11-27 21:29:12,960 | INFO     | sum of square deviations: 766315705418.3049
[2025-11-27 22:29:52] 2025-11-27 21:29:13,017 | INFO     | sum of deviations: 2200947301851.9614
[2025-11-27 22:29:52] 2025-11-27 21:29:13,018 | INFO     | mean x: 1764237604.5754437
[2025-11-27 22:29:52] 2025-11-27 21:29:13,018 | INFO     | mean y: 2853932.1915680473
[2025-11-27 22:29:52] 2025-11-27 21:29:13,018 | INFO     | intersect: -5064240436.566671
[2025-11-27 22:29:52] 2025-11-27 21:29:13,020 | INFO     | chi2: 14.96055068673108
[2025-11-27 22:29:52] 2025-11-27 21:29:13,020 | INFO     | current chi2=14.96055068673108 (change=22.768741075823492 %)
[2025-11-27 22:29:52] 2025-11-27 21:29:13,020 | INFO     | left removable region: 10
[2025-11-27 22:29:52] 2025-11-27 21:29:13,022 | INFO     | sum of square deviations: 747763081591.4773
[2025-11-27 22:29:52] 2025-11-27 21:29:13,086 | INFO     | sum of deviations: 2295745549655.9414
[2025-11-27 22:29:52] 2025-11-27 21:29:13,086 | INFO     | mean x: 1764237574.0842655
[2025-11-27 22:29:52] 2025-11-27 21:29:13,086 | INFO     | mean y: 2872062.0447427295
[2025-11-27 22:29:52] 2025-11-27 21:29:13,086 | INFO     | intersect: -5413603635.872234
[2025-11-27 22:29:52] 2025-11-27 21:29:13,088 | INFO     | chi2: 8.106930675499058
[2025-11-27 22:29:52] 2025-11-27 21:29:13,088 | INFO     | current memory leak: 3.07 B/s (using 1341 data points, chi2=8.11)
[2025-11-27 22:29:52] 2025-11-27 21:29:13,090 | INFO     | could have reported an average CPU frequency of 1999 MHz (46 samples)
[2025-11-27 22:29:52] 2025-11-27 21:29:13,090 | INFO     | correcting setup and stagein times since remote i/o verification was done
[2025-11-27 22:29:52] 2025-11-27 21:29:13,090 | INFO     | ..............................
[2025-11-27 22:29:52] 2025-11-27 21:29:13,090 | INFO     | . Timing measurements:
[2025-11-27 22:29:52] 2025-11-27 21:29:13,090 | INFO     | . get job = 0 s
[2025-11-27 22:29:52] 2025-11-27 21:29:13,090 | INFO     | . initial setup = 13 s
[2025-11-27 22:29:52] 2025-11-27 21:29:13,090 | INFO     | . payload setup = 160 s
[2025-11-27 22:29:52] 2025-11-27 21:29:13,091 | INFO     | . stage-in = 1 s
[2025-11-27 22:29:52] 2025-11-27 21:29:13,091 | INFO     | . payload execution = 82921 s
[2025-11-27 22:29:52] 2025-11-27 21:29:13,091 | INFO     | . stage-out = 5 s
[2025-11-27 22:29:52] 2025-11-27 21:29:13,091 | INFO     | . log creation = 2 s
[2025-11-27 22:29:52] 2025-11-27 21:29:13,091 | INFO     | ..............................
[2025-11-27 22:29:52] 2025-11-27 21:29:13,327 | INFO     | time since job start (83401s) is within the limit (172800.0s)
[2025-11-27 22:29:52] 2025-11-27 21:29:13,556 | INFO     | 
[2025-11-27 22:29:52] 2025-11-27 21:29:13,557 | INFO     | job summary report
[2025-11-27 22:29:52] 2025-11-27 21:29:13,557 | INFO     | --------------------------------------------------
[2025-11-27 22:29:52] 2025-11-27 21:29:13,557 | INFO     | PanDA job id: 6895358838
[2025-11-27 22:29:52] 2025-11-27 21:29:13,557 | INFO     | task id: 47556137
[2025-11-27 22:29:52] 2025-11-27 21:29:13,557 | INFO     | errors: (none)
[2025-11-27 22:29:52] 2025-11-27 21:29:13,557 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 22:29:52] 2025-11-27 21:29:13,557 | INFO     | pilot state: finished 
[2025-11-27 22:29:52] 2025-11-27 21:29:13,558 | INFO     | transexitcode: 0
[2025-11-27 22:29:52] 2025-11-27 21:29:13,558 | INFO     | exeerrorcode: 0
[2025-11-27 22:29:52] 2025-11-27 21:29:13,558 | INFO     | exeerrordiag: 
[2025-11-27 22:29:52] 2025-11-27 21:29:13,558 | INFO     | exitcode: 0
[2025-11-27 22:29:52] 2025-11-27 21:29:13,558 | INFO     | exitmsg: OK
[2025-11-27 22:29:52] 2025-11-27 21:29:13,558 | INFO     | cpuconsumptiontime: 316064 s
[2025-11-27 22:29:52] 2025-11-27 21:29:13,558 | INFO     | nevents: 1000
[2025-11-27 22:29:52] 2025-11-27 21:29:13,558 | INFO     | neventsw: 0
[2025-11-27 22:29:52] 2025-11-27 21:29:13,558 | INFO     | pid: 9453
[2025-11-27 22:29:52] 2025-11-27 21:29:13,558 | INFO     | pgrp: 9453
[2025-11-27 22:29:52] 2025-11-27 21:29:13,559 | INFO     | corecount: 8
[2025-11-27 22:29:52] 2025-11-27 21:29:13,559 | INFO     | event service: False
[2025-11-27 22:29:52] 2025-11-27 21:29:13,559 | INFO     | sizes: {0: 2284089, 1: 2284344, 12: 2284344, 23: 2284372, 33: 2284400, 44: 2284456, 55: 2284612, 65: 2284640, 76: 2284668, 87: 2284724, 98: 2284752, 102: 2285322, 
[2025-11-27 22:29:52] 2025-11-27 21:29:13,559 | INFO     | --------------------------------------------------
[2025-11-27 22:29:52] 2025-11-27 21:29:13,559 | INFO     | 
[2025-11-27 22:29:52] 2025-11-27 21:29:13,559 | INFO     | executing command: ls -lF /var/lib/boinc/slots/27
[2025-11-27 22:29:52] 2025-11-27 21:29:14,012 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 22:29:52] 2025-11-27 21:29:14,012 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 22:29:52] 2025-11-27 21:29:14,012 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 22:29:52] 2025-11-27 21:29:14,013 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 22:29:52] 2025-11-27 21:29:14,013 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 22:29:52] 2025-11-27 21:29:14,013 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 22:29:52] 2025-11-27 21:29:14,013 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 22:29:52] 2025-11-27 21:29:14,013 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 22:29:52] 2025-11-27 21:29:14,013 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 22:29:52] 2025-11-27 21:29:14,013 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 22:29:52] 2025-11-27 21:29:14,013 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 22:29:52] 2025-11-27 21:29:14,013 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 22:29:52] 2025-11-27 21:29:14,014 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 22:29:52] 2025-11-27 21:29:14,014 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 22:29:52] 2025-11-27 21:29:14,014 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 22:29:52] 2025-11-27 21:29:14,014 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 22:29:52] 2025-11-27 21:29:14,014 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 22:29:52] 2025-11-27 21:29:14,014 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 22:29:52] 2025-11-27 21:29:14,014 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 22:29:52] 2025-11-27 21:29:14,014 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 22:29:52] 2025-11-27 21:29:14,015 | INFO     | job 6895358838 has completed (purged errors)
[2025-11-27 22:29:52] 2025-11-27 21:29:14,015 | INFO     | overall cleanup function is called
[2025-11-27 22:29:52] 2025-11-27 21:29:15,038 | INFO     | --- collectZombieJob: --- 10, [9453]
[2025-11-27 22:29:52] 2025-11-27 21:29:15,039 | INFO     | zombie collector waiting for pid 9453
[2025-11-27 22:29:52] 2025-11-27 21:29:15,039 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 22:29:52] 2025-11-27 21:29:15,039 | INFO     | collected zombie processes
[2025-11-27 22:29:52] 2025-11-27 21:29:15,039 | INFO     | will attempt to kill all subprocesses of pid=9453
[2025-11-27 22:29:52] 2025-11-27 21:29:15,167 | INFO     | process IDs to be killed: [9453] (in reverse order)
[2025-11-27 22:29:52] 2025-11-27 21:29:16,141 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 22:29:52] 2025-11-27 21:29:16,141 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 22:29:52] 2025-11-27 21:29:16,144 | INFO     | did not find any defunct processes belonging to 9453
[2025-11-27 22:29:52] 2025-11-27 21:29:16,147 | INFO     | did not find any defunct processes belonging to 9453
[2025-11-27 22:29:52] 2025-11-27 21:29:16,190 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 22:29:52] 2025-11-27 21:29:16,190 | INFO     | ready for new job
[2025-11-27 22:29:52] 2025-11-27 21:29:16,190 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 22:29:52] 2025-11-27 21:29:16,200 | INFO     | ***************************************
[2025-11-27 22:29:52] 2025-11-27 21:29:16,200 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 22:29:52] 2025-11-27 21:29:16,200 | INFO     | ***************************************
[2025-11-27 22:29:52] 2025-11-27 21:29:16,200 | INFO     | 
[2025-11-27 22:29:52] 2025-11-27 21:29:16,201 | INFO     | pilot is running in a VM
[2025-11-27 22:29:52] 2025-11-27 21:29:16,201 | INFO     | architecture information:
[2025-11-27 22:29:52] 2025-11-27 21:29:16,212 | INFO     | executing command: cat /etc/os-release
[2025-11-27 22:29:52] 2025-11-27 21:29:16,467 | INFO     | cat /etc/os-release:
[2025-11-27 22:29:52] NAME="CentOS Linux"
[2025-11-27 22:29:52] VERSION="7 (Core)"
[2025-11-27 22:29:52] ID="centos"
[2025-11-27 22:29:52] ID_LIKE="rhel fedora"
[2025-11-27 22:29:52] VERSION_ID="7"
[2025-11-27 22:29:52] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 22:29:52] ANSI_COLOR="0;31"
[2025-11-27 22:29:52] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 22:29:52] HOME_URL="https://www.centos.org/"
[2025-11-27 22:29:52] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 22:29:52] 
[2025-11-27 22:29:52] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 22:29:52] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 22:29:52] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 22:29:52] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 22:29:52] 
[2025-11-27 22:29:52] 2025-11-27 21:29:16,467 | INFO     | ***************************************
[2025-11-27 22:29:52] 2025-11-27 21:29:16,972 | INFO     | executing command: df -mP /var/lib/boinc/slots/27
[2025-11-27 22:29:52] 2025-11-27 21:29:17,215 | INFO     | sufficient remaining disk space (495265513472 B)
[2025-11-27 22:29:52] 2025-11-27 21:29:17,215 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 22:29:52] 2025-11-27 21:29:17,215 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 22:29:52] 2025-11-27 21:29:17,216 | INFO     | update_server=False
[2025-11-27 22:29:52] 2025-11-27 21:29:17,216 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 22:29:52] 2025-11-27 21:29:17,216 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 22:29:52] 2025-11-27 21:29:17,216 | INFO     | aborting loop
[2025-11-27 22:29:52] 2025-11-27 21:29:17,216 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 22:29:52] 2025-11-27 21:29:17,266 | INFO     | all job control threads have been joined
[2025-11-27 22:29:52] 2025-11-27 21:29:17,768 | INFO     | all payload control threads have been joined
[2025-11-27 22:29:52] 2025-11-27 21:29:18,013 | INFO     | all data control threads have been joined
[2025-11-27 22:29:52] 2025-11-27 21:29:18,222 | INFO     | [job] retrieve thread has finished
[2025-11-27 22:29:52] 2025-11-27 21:29:18,222 | INFO     | [job] job monitor thread has finished
[2025-11-27 22:29:52] 2025-11-27 21:29:18,226 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 22:29:52] 2025-11-27 21:29:18,236 | INFO     | [data] copytool_in thread has finished
[2025-11-27 22:29:52] 2025-11-27 21:29:18,272 | INFO     | [job] control thread has finished
[2025-11-27 22:29:52] 2025-11-27 21:29:18,335 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 22:29:52] 2025-11-27 21:29:18,419 | INFO     | [payload] validate_post thread has finished
[2025-11-27 22:29:52] 2025-11-27 21:29:18,533 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 22:29:52] 2025-11-27 21:29:18,774 | INFO     | [payload] control thread has finished
[2025-11-27 22:29:52] 2025-11-27 21:29:18,803 | INFO     | [job] validate thread has finished
[2025-11-27 22:29:52] 2025-11-27 21:29:19,019 | INFO     | [data] control thread has finished
[2025-11-27 22:29:52] 2025-11-27 21:29:19,116 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 22:29:52] 2025-11-27 21:29:19,223 | INFO     | [data] copytool_out thread has finished
[2025-11-27 22:29:52] 2025-11-27 21:29:19,232 | INFO     | [job] queue monitor thread has finished
[2025-11-27 22:29:52] 2025-11-27 21:29:19,441 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 22:29:52] 2025-11-27 21:29:19,547 | INFO     | [payload] failed_post thread has finished
[2025-11-27 22:29:52] 2025-11-27 21:29:19,597 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 22:29:52] 2025-11-27 21:29:23,125 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 22:29:52] 2025-11-27 21:29:37,272 | INFO     | [monitor] cgroup control has ended
[2025-11-27 22:29:52] 2025-11-27 21:29:38,442 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140547236411200)>', '<ExcThread(monitor, started 140546781714176)>']
[2025-11-27 22:29:52] 2025-11-27 21:29:43,468 | INFO     | all workflow threads have been joined
[2025-11-27 22:29:52] 2025-11-27 21:29:43,469 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 22:29:52] 2025-11-27 21:29:43,469 | INFO     | traces error code: 0
[2025-11-27 22:29:52] 2025-11-27 21:29:43,469 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 22:29:52] 2025-11-27 21:29:46,533 | INFO     | PID=2908 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-27 22:29:52] 2025-11-27 21:29:46,534 | INFO     | .. there are 9 such processes running
[2025-11-27 22:29:52] 2025-11-27 21:29:46,534 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 22:29:52] 2025-11-27 21:29:46,534 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 22:29:52] 2025-11-27 21:29:46,534 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 22:29:52] 2025-11-27 21:29:46,534 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 22:29:52] 2025-11-27 21:29:46,536 | INFO     | [monitor] control thread has ended
[2025-11-27 22:29:52] 2025-11-27 21:29:46,912 [wrapper] ==== pilot stdout END ====
[2025-11-27 22:29:52] 2025-11-27 21:29:46,983 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 22:29:52] 2025-11-27 21:29:47,071 [wrapper] pilotpid: 2908
[2025-11-27 22:29:52] 2025-11-27 21:29:47,163 [wrapper] Pilot exit status: 0
[2025-11-27 22:29:52] 2025-11-27 21:29:47,516 [wrapper] pandaids: 6895358838
[2025-11-27 22:29:52] 2025-11-27 21:29:48,715 [wrapper] cleanup supervisor_pilot 19103 2909
[2025-11-27 22:29:52] 2025-11-27 21:29:48,858 [wrapper] Test setup, not cleaning
[2025-11-27 22:29:52] 2025-11-27 21:29:48,974 [wrapper] apfmon messages muted
[2025-11-27 22:29:52] 2025-11-27 21:29:49,062 [wrapper] ==== wrapper stdout END ====
[2025-11-27 22:29:52] 2025-11-27 21:29:49,148 [wrapper] ==== wrapper stderr END ====
[2025-11-27 22:29:52]  *** Error codes and diagnostics ***
[2025-11-27 22:29:52]     "exeErrorCode": 0,
[2025-11-27 22:29:52]     "exeErrorDiag": "",
[2025-11-27 22:29:52]     "pilotErrorCode": 0,
[2025-11-27 22:29:52]     "pilotErrorDiag": "",
[2025-11-27 22:29:52]  *** Listing of results directory ***
[2025-11-27 22:29:52] total 1336044
[2025-11-27 22:29:52] -rw-r--r--. 1 boinc boinc    576529 Nov 23 13:50 pilot3.tar.gz
[2025-11-27 22:29:52] -rwx------. 1 boinc boinc     36292 Nov 23 14:00 runpilot2-wrapper.sh
[2025-11-27 22:29:52] -rw-r--r--. 1 boinc boinc      5112 Nov 23 14:00 queuedata.json
[2025-11-27 22:29:52] -rw-r--r--. 1 boinc boinc       100 Nov 26 23:15 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 22:29:52] -rwxr-xr-x. 1 boinc boinc      7986 Nov 26 23:15 run_atlas
[2025-11-27 22:29:52] -rw-r--r--. 1 boinc boinc       105 Nov 26 23:15 job.xml
[2025-11-27 22:29:52] -rw-r--r--. 2 boinc boinc 409846010 Nov 26 23:15 EVNT.47483658._000738.pool.root.1
[2025-11-27 22:29:52] -rw-r--r--. 2 boinc boinc     15847 Nov 26 23:15 start_atlas.sh
[2025-11-27 22:29:52] drwxrwx--x. 2 boinc boinc        68 Nov 26 23:15 shared
[2025-11-27 22:29:52] -rw-r--r--. 2 boinc boinc    590093 Nov 26 23:15 input.tar.gz
[2025-11-27 22:29:52] -rw-r--r--. 1 boinc boinc      6392 Nov 26 23:15 init_data.xml
[2025-11-27 22:29:52] -rw-r--r--. 1 boinc boinc         0 Nov 26 23:15 boinc_lockfile
[2025-11-27 22:29:52] -rw-r--r--. 1 boinc boinc      2786 Nov 26 23:15 pandaJob.out
[2025-11-27 22:29:52] -rw-------. 1 boinc boinc    991546 Nov 26 23:19 agis_schedconf.cvmfs.json
[2025-11-27 22:29:52] drwx------. 5 boinc boinc      4096 Nov 26 23:19 pilot3
[2025-11-27 22:29:52] -rw-r--r--. 1 boinc boinc       533 Nov 27 22:03 boinc_task_state.xml
[2025-11-27 22:29:52] -rw-------. 1 boinc boinc 927250165 Nov 27 22:26 HITS.47556137._007339.pool.root.1
[2025-11-27 22:29:52] -rw-------. 1 boinc boinc      1033 Nov 27 22:27 memory_monitor_summary.json
[2025-11-27 22:29:52] -rw-------. 1 boinc boinc   1516240 Nov 27 22:27 agis_ddmendpoints.agis.ALL.json
[2025-11-27 22:29:52] -rw-------. 1 boinc boinc   2448734 Nov 27 22:27 log.47556137._007339.job.log.tgz.1
[2025-11-27 22:29:52] -rw-------. 1 boinc boinc        95 Nov 27 22:29 pilot_heartbeat.json
[2025-11-27 22:29:52] -rw-------. 1 boinc boinc      8625 Nov 27 22:29 heartbeat.json
[2025-11-27 22:29:52] -rw-r--r--. 1 boinc boinc      8192 Nov 27 22:29 boinc_mmap_file
[2025-11-27 22:29:52] -rw-r--r--. 1 boinc boinc        29 Nov 27 22:29 wrapper_checkpoint.txt
[2025-11-27 22:29:52] -rw-------. 1 boinc boinc       819 Nov 27 22:29 pilotlog.txt
[2025-11-27 22:29:52] -rw-------. 1 boinc boinc  11108058 Nov 27 22:29 log.47556137._007339.job.log.1
[2025-11-27 22:29:52] -rw-------. 1 boinc boinc       353 Nov 27 22:29 output.list
[2025-11-27 22:29:52] -rw-r--r--. 1 boinc boinc       620 Nov 27 22:29 runtime_log
[2025-11-27 22:29:52] -rw-------. 1 boinc boinc  13578240 Nov 27 22:29 result.tar.gz
[2025-11-27 22:29:52] -rw-------. 1 boinc boinc       662 Nov 27 22:29 t6qMDm6sOh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmcuKKDm2THwsm.diag
[2025-11-27 22:29:52] -rw-r--r--. 1 boinc boinc      8833 Nov 27 22:29 runtime_log.err
[2025-11-27 22:29:52] -rw-r--r--. 1 boinc boinc     21532 Nov 27 22:29 stderr.txt
[2025-11-27 22:29:52] HITS file was successfully produced:
[2025-11-27 22:29:52] -rw-------. 1 boinc boinc 927250165 Nov 27 22:26 shared/HITS.pool.root.1
[2025-11-27 22:29:52]  *** Contents of shared directory: ***
[2025-11-27 22:29:52] total 1319620
[2025-11-27 22:29:52] -rw-r--r--. 2 boinc boinc 409846010 Nov 26 23:15 ATLAS.root_0
[2025-11-27 22:29:52] -rw-r--r--. 2 boinc boinc     15847 Nov 26 23:15 start_atlas.sh
[2025-11-27 22:29:52] -rw-r--r--. 2 boinc boinc    590093 Nov 26 23:15 input.tar.gz
[2025-11-27 22:29:52] -rw-------. 1 boinc boinc 927250165 Nov 27 22:26 HITS.pool.root.1
[2025-11-27 22:29:52] -rw-------. 1 boinc boinc  13578240 Nov 27 22:29 result.tar.gz
22:29:53 (31495): run_atlas exited; CPU time 316611.989806
22:29:53 (31495): called boinc_finish(0)

</stderr_txt>
]]>

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